CN188638
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CN188638 vs. ExPASy Swiss-Prot
Match: COPB_BOVIN (Coatomer subunit beta OS=Bos taurus GN=COPB1 PE=2 SV=1) HSP 1 Score: 114.775 bits (286), Expect = 4.652e-25 Identity = 78/229 (34.06%), Postives = 121/229 (52.84%), Query Frame = 1 Query: 22 ALWIIGEYCQSLSEVENGIATIKQCLGELPFFSVSEEGEDTDSSKKXXXXXXXXXXXXRRPAVLADGTYATQSAASETAFSPPTIVQGTLTSGNLRSLLLTGDFFLGAVVACTLTKLVLRLEEVQPSRVEVNKASSQALLIMVSMLQLGQSPVLPHPIDNDSFDRIVVCIRLLCNTGDNIRKIWLQSCRQSFVKMLSEKQLRE--SEELKAKAQISHAQPDDLIDFYHL 702 ALWI+GEYC + ++++ + +++ LGE+P SE ++ K + V GTYATQSA S S PT + LR LL GDFF+ A +A TLTK+ LR + + + N ++A+L+M ++L LG+S + PI +D DRI +C+++L + I+ + CRQS MLS K E S++ +++ + QPDD I F L Sbjct: 458 ALWILGEYCSTKDDIQSVMTEVRRSLGEIPIVE-SEIKKEAGELKPEEEITVGPV----QKLVTEMGTYATQSALSS---SRPTKKEEERPP--LRGFLLDGDFFVAASLATTLTKIALRYVALVQEKKKQNSFVAEAMLLMATILHLGKSSLPKKPITDDDVDRISLCLKVLSECSPLMNDIFNKECRQSLSHMLSAKLEEEKLSQKKESEKRNVTVQPDDPISFMQL 676
BLAST of CN188638 vs. ExPASy Swiss-Prot
Match: COPB_SCHPO (Coatomer subunit beta OS=Schizosaccharomyces pombe GN=sec26 PE=2 SV=1) HSP 1 Score: 107.071 bits (266), Expect = 9.699e-23 Identity = 66/226 (29.20%), Postives = 119/226 (52.65%), Query Frame = 1 Query: 25 LWIIGEYCQSLSEVENGIATIKQCLGELPFFSVSEEG-EDTDSSKKXXXXXXXXXXXXRRPAVLADGTYATQSAASETAFSPPTIVQGTLTSGN-LRSLLLTGDFFLGAVVACTLTKLVLRLEEVQPSRVEVNKASSQALLIMVSMLQLGQSPVLPHPIDNDSFDRIVVCIRLLCNTGD--NIRKIWLQSCRQSFVKMLSEKQLRESEELKAKAQISHAQPDDLID 690 +WI GEYC + ++ +I+ LGE+P + E+ +D + + VL DGTYAT+SA + A S + + LR+ +L+GD++L AV+A LTKLV+R + + +N ++A LIM S++++GQS + + ID+DS +RI+ CIR + + + + ++L R++F ++++ R+ E Q D+L++ Sbjct: 451 IWIAGEYCLTEDDIRVAWKSIRASLGEVPILASEEQLLKDVSNVPEDDLLIDISAPASTSRKVLPDGTYATESAVTSEALSAARLEAVKASKKPPLRTQILSGDYYLAAVLASALTKLVMRFARLSFDKERLNALKAEACLIMTSIIRVGQSKFVKYTIDDDSVERIMNCIRAIYSFEELPEFQTVFLDDMRKAFSSLVAQSDKRQKEADLLVNGSDAVQADELLN 676
BLAST of CN188638 vs. ExPASy Swiss-Prot
Match: COPB_YEAST (Coatomer subunit beta OS=Saccharomyces cerevisiae GN=SEC26 PE=1 SV=2) HSP 1 Score: 102.064 bits (253), Expect = 3.120e-21 Identity = 57/173 (32.95%), Postives = 96/173 (55.49%), Query Frame = 1 Query: 22 ALWIIGEYCQSLSEVENGIATIKQCLGELPFFSVSEEGEDTDSSKKXXXXXXXXXXXXRRPAVLADGTYATQSAASETAFSPPTIVQGTLTSGNLRSLLLTGDFFLGAVVACTLTKLVLRLEEVQPSRVEVNKASSQALLIMVSMLQLGQSPVLPHPIDNDSFDRIVVCIRLL 540 ALWI+GEY + SE+++ I+ +GE+P SE + T + + P +L DGTYAT+SA + + +R +L+GDF+ A++A T+ KLVL+ E V ++ +N ++ALLI+VS++++GQS ++ ID DS +R++ I +L Sbjct: 459 ALWIMGEYAEGESEIQHCWKHIRNSVGEVPILQ-SEIKKLTQNQEHTEENEVDATAKPTGPVILPDGTYATESAFDVKTSQKSVTDEERDSRPPIRRFVLSGDFYTAAILANTIIKLVLKFENVSKNKTVINALKAEALLILVSIVRVGQSSLVEKKIDEDSLERVMTSISIL 630
BLAST of CN188638 vs. ExPASy Swiss-Prot
Match: COPB_DICDI (Coatomer subunit beta OS=Dictyostelium discoideum GN=copb PE=2 SV=2) HSP 1 Score: 75.485 bits (184), Expect = 3.127e-13 Identity = 36/134 (26.87%), Postives = 77/134 (57.46%), Query Frame = 1 Query: 301 NLRSLLLTGDFFLGAVVACTLTKLVLRLEEVQPSRVEVNKASSQALLIMVSMLQLGQSPVLPHPIDNDSFDRIVVCIRLLCNTGDNIRKIWLQSCRQSFVKMLSEKQLRESEELKAKAQISHAQPDDLIDFYHL 702 +++ L+ GD++L + ++ +LTKL R E++ + NK +Q ++I+ ++ L ++ + +++R++ CI++L ++ I+KIWLQ CR SF L +++SE K + +P+++I+ L Sbjct: 510 SIQKLIADGDWYLASCISSSLTKLFFRAEQLNIDNADSNKLKAQVMMIISVLINLSKASQVS--TSKSAYERMLSCIQVLIDSNATIKKIWLQDCRDSFANYLKYLLIKQSENKKKTEKEVLVKPNNIINIRQL 641 The following BLAST results are available for this feature:
BLAST of CN188638 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 14
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Sequences
The
following sequences are available for this feature:
EST sequence >CN188638 ID=CN188638; Name=CN188638; organism=Citrus sinensis; type=EST; length=702bpback to top |