CN188638

Overview
NameCN188638
Unique NameCN188638
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length702
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13383 contig Csv1_Contig13383:130..831. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN188638 vs. ExPASy Swiss-Prot
Match: COPB_BOVIN (Coatomer subunit beta OS=Bos taurus GN=COPB1 PE=2 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.652e-25
Identity = 78/229 (34.06%), Postives = 121/229 (52.84%), Query Frame = 1
Query:   22 ALWIIGEYCQSLSEVENGIATIKQCLGELPFFSVSEEGEDTDSSKKXXXXXXXXXXXXRRPAVLADGTYATQSAASETAFSPPTIVQGTLTSGNLRSLLLTGDFFLGAVVACTLTKLVLRLEEVQPSRVEVNKASSQALLIMVSMLQLGQSPVLPHPIDNDSFDRIVVCIRLLCNTGDNIRKIWLQSCRQSFVKMLSEKQLRE--SEELKAKAQISHAQPDDLIDFYHL 702
            ALWI+GEYC +  ++++ +  +++ LGE+P    SE  ++    K              +  V   GTYATQSA S    S PT  +       LR  LL GDFF+ A +A TLTK+ LR   +   + + N   ++A+L+M ++L LG+S +   PI +D  DRI +C+++L      +  I+ + CRQS   MLS K   E  S++ +++ +    QPDD I F  L
Sbjct:  458 ALWILGEYCSTKDDIQSVMTEVRRSLGEIPIVE-SEIKKEAGELKPEEEITVGPV----QKLVTEMGTYATQSALSS---SRPTKKEEERPP--LRGFLLDGDFFVAASLATTLTKIALRYVALVQEKKKQNSFVAEAMLLMATILHLGKSSLPKKPITDDDVDRISLCLKVLSECSPLMNDIFNKECRQSLSHMLSAKLEEEKLSQKKESEKRNVTVQPDDPISFMQL 676          
BLAST of CN188638 vs. ExPASy Swiss-Prot
Match: COPB_SCHPO (Coatomer subunit beta OS=Schizosaccharomyces pombe GN=sec26 PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 9.699e-23
Identity = 66/226 (29.20%), Postives = 119/226 (52.65%), Query Frame = 1
Query:   25 LWIIGEYCQSLSEVENGIATIKQCLGELPFFSVSEEG-EDTDSSKKXXXXXXXXXXXXRRPAVLADGTYATQSAASETAFSPPTIVQGTLTSGN-LRSLLLTGDFFLGAVVACTLTKLVLRLEEVQPSRVEVNKASSQALLIMVSMLQLGQSPVLPHPIDNDSFDRIVVCIRLLCNTGD--NIRKIWLQSCRQSFVKMLSEKQLRESEELKAKAQISHAQPDDLID 690
            +WI GEYC +  ++     +I+  LGE+P  +  E+  +D  +  +                VL DGTYAT+SA +  A S   +     +    LR+ +L+GD++L AV+A  LTKLV+R   +   +  +N   ++A LIM S++++GQS  + + ID+DS +RI+ CIR + +  +    + ++L   R++F  ++++   R+ E           Q D+L++
Sbjct:  451 IWIAGEYCLTEDDIRVAWKSIRASLGEVPILASEEQLLKDVSNVPEDDLLIDISAPASTSRKVLPDGTYATESAVTSEALSAARLEAVKASKKPPLRTQILSGDYYLAAVLASALTKLVMRFARLSFDKERLNALKAEACLIMTSIIRVGQSKFVKYTIDDDSVERIMNCIRAIYSFEELPEFQTVFLDDMRKAFSSLVAQSDKRQKEADLLVNGSDAVQADELLN 676          
BLAST of CN188638 vs. ExPASy Swiss-Prot
Match: COPB_YEAST (Coatomer subunit beta OS=Saccharomyces cerevisiae GN=SEC26 PE=1 SV=2)

HSP 1 Score: 102.064 bits (253), Expect = 3.120e-21
Identity = 57/173 (32.95%), Postives = 96/173 (55.49%), Query Frame = 1
Query:   22 ALWIIGEYCQSLSEVENGIATIKQCLGELPFFSVSEEGEDTDSSKKXXXXXXXXXXXXRRPAVLADGTYATQSAASETAFSPPTIVQGTLTSGNLRSLLLTGDFFLGAVVACTLTKLVLRLEEVQPSRVEVNKASSQALLIMVSMLQLGQSPVLPHPIDNDSFDRIVVCIRLL 540
            ALWI+GEY +  SE+++    I+  +GE+P    SE  + T + +               P +L DGTYAT+SA            +   +   +R  +L+GDF+  A++A T+ KLVL+ E V  ++  +N   ++ALLI+VS++++GQS ++   ID DS +R++  I +L
Sbjct:  459 ALWIMGEYAEGESEIQHCWKHIRNSVGEVPILQ-SEIKKLTQNQEHTEENEVDATAKPTGPVILPDGTYATESAFDVKTSQKSVTDEERDSRPPIRRFVLSGDFYTAAILANTIIKLVLKFENVSKNKTVINALKAEALLILVSIVRVGQSSLVEKKIDEDSLERVMTSISIL 630          
BLAST of CN188638 vs. ExPASy Swiss-Prot
Match: COPB_DICDI (Coatomer subunit beta OS=Dictyostelium discoideum GN=copb PE=2 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 3.127e-13
Identity = 36/134 (26.87%), Postives = 77/134 (57.46%), Query Frame = 1
Query:  301 NLRSLLLTGDFFLGAVVACTLTKLVLRLEEVQPSRVEVNKASSQALLIMVSMLQLGQSPVLPHPIDNDSFDRIVVCIRLLCNTGDNIRKIWLQSCRQSFVKMLSEKQLRESEELKAKAQISHAQPDDLIDFYHL 702
            +++ L+  GD++L + ++ +LTKL  R E++     + NK  +Q ++I+  ++ L ++  +       +++R++ CI++L ++   I+KIWLQ CR SF   L    +++SE  K   +    +P+++I+   L
Sbjct:  510 SIQKLIADGDWYLASCISSSLTKLFFRAEQLNIDNADSNKLKAQVMMIISVLINLSKASQVS--TSKSAYERMLSCIQVLIDSNATIKKIWLQDCRDSFANYLKYLLIKQSENKKKTEKEVLVKPNNIINIRQL 641          
The following BLAST results are available for this feature:
BLAST of CN188638 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
COPB_BOVIN4.652e-2534.06Coatomer subunit beta OS=Bos taurus GN=COPB1 PE=2 ... [more]
COPB_SCHPO9.699e-2329.20Coatomer subunit beta OS=Schizosaccharomyces pombe... [more]
COPB_YEAST3.120e-2132.95Coatomer subunit beta OS=Saccharomyces cerevisiae ... [more]
COPB_DICDI3.127e-1326.87Coatomer subunit beta OS=Dictyostelium discoideum ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006H16_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006H16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188638 ID=CN188638; Name=CN188638; organism=Citrus sinensis; type=EST; length=702bp
GATTTACGAGTGTGCACTTGCGCTCTTTGGATCATTGGAGAGTATTGCCA
GTCTCTTTCTGAAGTTGAGAATGGCATAGCAACCATTAAGCAGTGTCTTG
GAGAGTTGCCATTTTTCTCAGTCTCTGAAGAAGGGGAGGATACTGATTCT
TCTAAGAAAGTTCAGCAGCAAGCCAGCTCAACTACTGTTTCTTCCAGGAG
ACCAGCTGTTCTTGCTGATGGAACTTATGCTACTCAGAGTGCCGCCTCTG
AAACCGCTTTTTCCCCTCCTACCATTGTTCAGGGAACATTGACTTCTGGA
AATTTAAGATCCCTTCTTCTCACTGGTGATTTTTTCCTTGGGGCAGTTGT
GGCTTGCACACTGACAAAGCTTGTTTTGAGATTGGAGGAGGTGCAGCCAT
CTCGAGTTGAAGTGAATAAAGCATCCTCACAGGCCTTACTGATCATGGTC
TCAATGTTGCAATTAGGACAATCTCCAGTTCTGCCACACCCAATTGATAA
CGATTCTTTTGATAGGATTGTTGTGTGCATAAGATTGCTTTGCAATACTG
GTGATAATATCAGGAAGATATGGTTGCAGTCTTGCCGCCAGAGCTTTGTG
AAGATGCTTTCCGAGAAACAGTTAAGGGAATCTGAGGAATTAAAGGCAAA
GGCTCAGATTTCTCATGCACAGCCAGATGACCTTATTGACTTCTACCATC
TG
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