CN188635

Overview
NameCN188635
Unique NameCN188635
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length766
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188635 vs. ExPASy Swiss-Prot
Match: IF4E2_CAEEL (Eukaryotic translation initiation factor 4E-2 OS=Caenorhabditis elegans GN=ife-2 PE=1 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 7.496e-19
Identity = 49/162 (30.25%), Postives = 91/162 (56.17%), Query Frame = -3
Query:  282 SYEDNIKKIVDFSTVEGFWVCYCHLARPSLLPSPTDLHLFKEGIRPLWEDSANCNGGKWIIRFKK----VVSGRFWEDLVLALVGDQL-DYGDNICGAVLSIRFNEDILSVWNRNASDHQAVMALRDSIKRHL-------KLPHSYVMEYKPHDASLRDNSS 731
            S+E+ +K +  FS+V  FW  +  +  PS L  P+D ++F++GI P+WE   N NGG+W+I  +K     +    W ++++A++G+Q  D  +++CG V ++R     +SVW  N++D  A + +   +K+ L       + P   V+ Y+ H++  +  SS
Sbjct:   35 SWEERLKNVKTFSSVGEFWALHDSIKPPSGLNPPSDYNVFRDGIEPMWEVPQNQNGGRWLITIEKGRTPEIMDTIWTEILMAMIGEQFSDDIESLCGIVCNVRGKGSKISVWTTNSADDGANLRIGGVLKQVLNNASMIHQRPLYDVLRYEDHESCQKKTSS 196          
BLAST of CN188635 vs. ExPASy Swiss-Prot
Match: IF4E1_SCHPO (Eukaryotic translation initiation factor 4E-1 OS=Schizosaccharomyces pombe GN=tif451 PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.848e-18
Identity = 53/166 (31.93%), Postives = 86/166 (51.81%), Query Frame = -3
Query:  270 TPGVRTQTSYEDNIKKIVDFSTVEGFWVCYCHLARPSLLPSPTDLHLFKEGIRPLWEDSANCNGGKWIIRFK---KVVSGRFWEDLVLALVGDQLD-YGDNICGAVLSIRFNEDILSVWNRNASDHQAVMALRDSIKRHLKLPHSYVMEYKPHDASLRDNSSYRNT 755
            TPG+     + +  K I+ F++VE FW  + ++   S LP  +D   F+EG+RP WED  N  GGKW  + K          W   VLA +G+ LD  G  + G V+++R     L+VW ++ ++ + +M +    K+ L LP S  +E+  H+ S +  S+   T
Sbjct:   53 TPGLE----WNELQKNIITFNSVEEFWGIHNNINPASSLPIKSDYSFFREGVRPEWEDVHNKTGGKWAFQNKGRGGNALDEMWLTTVLAAIGETLDPTGQEVMGVVINMRKGFYRLAVWTKSCNNREVLMEIGTRFKQVLNLPRSETIEFSAHEDSSKSGSTRAKT 214          
BLAST of CN188635 vs. ExPASy Swiss-Prot
Match: IF4E3_DANRE (Eukaryotic translation initiation factor 4E type 3 OS=Danio rerio GN=eif4e3 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.859e-18
Identity = 55/156 (35.26%), Postives = 79/156 (50.64%), Query Frame = -3
Query:  306 RRTPGVRTQTSYEDNIKKIVDFSTVEGFWVCYCHLARPSLLPSPTDLHLFKEGIRPLWEDSANCNGGKWIIRFKKVVSGRFWEDLVLALVGDQL-DY---GDNICGAVLSIRFNEDILSVWNRNASDHQAVMALRDSIKRHLKLPHSYVMEYKPHD 761
            R  PG  T    E N+KKI    TV+ FW  Y ++   S LP     HL +   RPLWE+ +N  GG W ++  K  +   W++L+LA +G+Q  DY    D + G  +S+R  ED++ VWN NAS       L    +   ++    V  YKPH+
Sbjct:   59 RSLPGT-TAAECESNLKKIYTVHTVQSFWSVYNNIPPVSCLPLRCSYHLMRGERRPLWEEESNAKGGVWKMKVPKESTLAVWKELLLATIGEQFTDYCASEDEVVGVSVSVREREDVVQVWNGNASFANEANVLGRIYELLPQISFKAVF-YKPHE 212          
BLAST of CN188635 vs. ExPASy Swiss-Prot
Match: IF4E2_ARATH (Eukaryotic translation initiation factor 4E-2 OS=Arabidopsis thaliana GN=EIF4E2 PE=1 SV=2)

HSP 1 Score: 91.6633 bits (226), Expect = 4.859e-18
Identity = 50/147 (34.01%), Postives = 77/147 (52.38%), Query Frame = -3
Query:  294 NIKKIVDFSTVEGFWVCYCHLARPSLLPSPTDLHLFKEGIRPLWEDSANCNGGKW---IIRFKKVVSGRFWEDLVLALVGDQLDYGDNICGAVLSIR--FNEDILSVWNRNASDHQAVMALRDSIKRHLKLPHSYVMEYKPHDASLR 719
            +++K   F TVE FW  +  + + S L +  ++HLFK G+ P WED    NGGKW   +   +K    + W + ++AL+G+Q D  D ICG V S+R    +D LS+W R  S+   +M +    K  L +     + +  HD S R
Sbjct:   49 SLRKAYTFDTVEDFWGLHETIFQTSKLTANAEIHLFKAGVEPKWEDPECANGGKWTWVVTANRKEALDKGWLETLMALIGEQFDEADEICGVVASVRPQSKQDKLSLWTRTKSNEAVLMGIGKKWKEILDVTDK--ITFNNHDDSRR 193          
BLAST of CN188635 vs. ExPASy Swiss-Prot
Match: IF4E1_CAEEL (Eukaryotic translation initiation factor 4E-1 OS=Caenorhabditis elegans GN=ife-1 PE=1 SV=2)

HSP 1 Score: 91.6633 bits (226), Expect = 4.859e-18
Identity = 51/162 (31.48%), Postives = 87/162 (53.70%), Query Frame = -3
Query:  282 SYEDNIKKIVDFSTVEGFWVCYCHLARPSLLPSPTDLHLFKEGIRPLWEDSANCNGGKWIIRFKK----VVSGRFWEDLVLALVGDQLDYG-DNICGAVLSIRFNEDILSVWNRNASDHQAVMALRDSIKRHL-------KLPHSYVMEYKPHDASLRDNSS 731
            S+ED +KK+  F+TV  FW  Y  +  PS L +  D ++F++ I+P+WE   N NGG+W+I   K     +    W ++++ALVG+Q     ++ICG V ++R     +SVW ++ +D +  M +   +K  L         P   V+ Y+ H++  +  SS
Sbjct:   30 SWEDRLKKVYTFNTVSEFWALYDAIRPPSGLNALCDYNVFRDDIQPMWEVPENSNGGRWLIVIDKGKTPEMVDAIWLEILMALVGEQFGKDMESICGLVCNVRGKGSKISVWTKDCNDDETNMRIGVVLKEKLMAASKDHSKPLFDVIRYEDHESCQKKTSS 191          
BLAST of CN188635 vs. ExPASy Swiss-Prot
Match: IF4E_CANGA (Eukaryotic translation initiation factor 4E OS=Candida glabrata GN=TIF45 PE=3 SV=2)

HSP 1 Score: 91.2781 bits (225), Expect = 6.346e-18
Identity = 49/154 (31.82%), Postives = 81/154 (52.60%), Query Frame = -3
Query:  300 PGVRTQTSYEDNIKKIVDFSTVEGFWVCYCHLARPSLLPSPTDLHLFKEGIRPLWEDSANCNGGKWI--IRFKKVVSGRFWEDLVLALVGDQLDYGDN-ICGAVLSIRFNEDILSVWNRNASDHQAVMALRDSIKRHLKLPHSYVMEYKPHDAS 752
            P V    S+ D ++ +  F +VE FW    ++  P  LP  +D H+F+  IRP WEDSAN  GGKW   +R +       W   +LA++G+ +D  D+ I G VL++R   +  ++W ++  D + +  +    K+ LKL     +E+ PH  +
Sbjct:   46 PAVDKSESWSDLLRPVTSFQSVEEFWAIVQNIPEPHELPLKSDYHVFRNDIRPEWEDSANAKGGKWSFQVRGRGAEIDELWLRTLLAVIGETIDEEDSQINGVVLNVRKGGNRFALWTKSC-DKEPLSNIGARFKQVLKLADEDTLEFFPHSTA 198          
BLAST of CN188635 vs. ExPASy Swiss-Prot
Match: IF4E3_MOUSE (Eukaryotic translation initiation factor 4E type 3 OS=Mus musculus GN=Eif4e3 PE=1 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 8.288e-18
Identity = 56/158 (35.44%), Postives = 78/158 (49.37%), Query Frame = -3
Query:  306 RRTPGVRTQTSYEDNIKKIVDFSTVEGFWVCYCHLARPSLLPSPTDLHLFKEGIRPLWEDSANCNGGKWIIRFKKVVSGRFWEDLVLALVGDQLD----YGDNICGAVLSIRFNEDILSVWNRNASDHQAVMALRDSIKRHLKLPH--SYVMEYKPHD 761
            R  PG  T      N+KKI    TV+ FW  Y ++   + LP     HL +   RPLWE+ +N  GG W ++  K  +   W++L+LA +G+Q        D I G  +S+R  ED++ VWN NAS       L    K H  LPH     + YKPH+
Sbjct:   42 RSLPGA-TAAECASNLKKIYTVQTVQIFWSVYNNIPPVTSLPLRCSYHLMRGERRPLWEEESNAKGGVWKMKVPKDSTSTVWKELLLATIGEQFTDCAAADDEIIGVSVSVRDREDVVQVWNVNASLVGEATVLE---KIHQLLPHIAFKAVFYKPHE 195          
BLAST of CN188635 vs. ExPASy Swiss-Prot
Match: I4E3B_XENLA (Eukaryotic translation initiation factor 4E type 3-B OS=Xenopus laevis GN=eif4e3-B PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 8.288e-18
Identity = 53/156 (33.97%), Postives = 77/156 (49.36%), Query Frame = -3
Query:  306 RRTPGVRTQTSYEDNIKKIVDFSTVEGFWVCYCHLARPSLLPSPTDLHLFKEGIRPLWEDSANCNGGKWIIRFKKVVSGRFWEDLVLALVGDQL----DYGDNICGAVLSIRFNEDILSVWNRNASDHQAVMALRDSIKRHLKLPHSYVMEYKPHD 761
            R  PG  T    E N+KKI    T++ FW  Y ++   S LP     HL +   +PLWE+ +N  GG W ++  K  S   W++L+LA +G+Q        D + G  +S+R  ED++ VWN NAS       L + I   L       + YKPH+
Sbjct:   53 RSLPGT-TAAECESNLKKIYTVHTIQSFWSVYNNIPLVSNLPLRWSYHLMRGERKPLWEEESNAKGGVWKMKVPKEASSLVWKELLLATIGEQFTDHCSPEDEVIGVSVSVRDREDVVQVWNGNASVVGEAKVL-EKIYELLPNTSFKAVFYKPHE 206          
BLAST of CN188635 vs. ExPASy Swiss-Prot
Match: IF4E3_XENTR (Eukaryotic translation initiation factor 4E type 3 OS=Xenopus tropicalis GN=eif4e3 PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.082e-17
Identity = 52/156 (33.33%), Postives = 78/156 (50.00%), Query Frame = -3
Query:  306 RRTPGVRTQTSYEDNIKKIVDFSTVEGFWVCYCHLARPSLLPSPTDLHLFKEGIRPLWEDSANCNGGKWIIRFKKVVSGRFWEDLVLALVGDQLD----YGDNICGAVLSIRFNEDILSVWNRNASDHQAVMALRDSIKRHLKLPHSYVMEYKPHD 761
            R  PG  T    E N+KKI    T++ FW  Y ++ + + LP     HL +   +PLWE+ +N  GG W ++  K  S   W++L+LA +G+Q        D + G  +S+R  ED++ VWN NAS       L + I   L       + YKPH+
Sbjct:   53 RSLPGT-TAAECESNLKKIYTVHTIQSFWSVYNNIPQVTNLPLRWSYHLMRGERKPLWEEESNAKGGVWKMKVPKEASSLVWKELLLATIGEQFTDRCAPEDEVIGVSVSVRDREDVVQVWNGNASVVGEATVL-EKIYELLPNTSFKAVFYKPHE 206          
BLAST of CN188635 vs. ExPASy Swiss-Prot
Match: I4E3A_XENLA (Eukaryotic translation initiation factor 4E type 3-A OS=Xenopus laevis GN=eif4e3-A PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.414e-17
Identity = 53/156 (33.97%), Postives = 78/156 (50.00%), Query Frame = -3
Query:  306 RRTPGVRTQTSYEDNIKKIVDFSTVEGFWVCYCHLARPSLLPSPTDLHLFKEGIRPLWEDSANCNGGKWIIRFKKVVSGRFWEDLVLALVGDQLD----YGDNICGAVLSIRFNEDILSVWNRNASDHQAVMALRDSIKRHLKLPHSYVMEYKPHD 761
            R  PG  T    E N+KKI    T++ FW  Y ++   + LP     HL +   +PLWE+ +N  GG W ++  K  S   W++L+LA +G+Q        D + G  +S+R  EDI+ VWN NAS   A   + + I   L       + YKPH+
Sbjct:   53 RSLPGT-TAAECESNLKKIYTVHTIQSFWSVYNNIPLVTNLPVRWSYHLMRGERKPLWEEESNAKGGVWKMKVPKEASSLVWKELLLATIGEQFTDRCAPEDEVIGVSVSVRDREDIVQVWNGNAS-VVAEATVLEKIYELLPNTSFKAVFYKPHE 206          
The following BLAST results are available for this feature:
BLAST of CN188635 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 43
Match NameE-valueIdentityDescription
IF4E2_CAEEL7.496e-1930.25Eukaryotic translation initiation factor 4E-2 OS=C... [more]
IF4E1_SCHPO2.848e-1831.93Eukaryotic translation initiation factor 4E-1 OS=S... [more]
IF4E3_DANRE4.859e-1835.26Eukaryotic translation initiation factor 4E type 3... [more]
IF4E2_ARATH4.859e-1834.01Eukaryotic translation initiation factor 4E-2 OS=A... [more]
IF4E1_CAEEL4.859e-1831.48Eukaryotic translation initiation factor 4E-1 OS=C... [more]
IF4E_CANGA6.346e-1831.82Eukaryotic translation initiation factor 4E OS=Can... [more]
IF4E3_MOUSE8.288e-1835.44Eukaryotic translation initiation factor 4E type 3... [more]
I4E3B_XENLA8.288e-1833.97Eukaryotic translation initiation factor 4E type 3... [more]
IF4E3_XENTR1.082e-1733.33Eukaryotic translation initiation factor 4E type 3... [more]
I4E3A_XENLA1.414e-1733.97Eukaryotic translation initiation factor 4E type 3... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006H14_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006H14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188635 ID=CN188635; Name=CN188635; organism=Citrus sinensis; type=EST; length=766bp
CCTTTTTATCAATATGAAGACGTACTCATTTATGAAACCATCATTAACCT
TCCATTTTTGGATGGTATCGATCTACAATTAATTATCAAGATCTTAACCT
ATCGAGACGGCCCACATGATTCTCACATCACAATTCACGGATAACTGCAT
CATCGGGTGAAAGAAATTCAAACAGAGCATGTAATAAAAACAGAAGACTT
CCTACTGTCATGTTCTTTCTCCATCAGTGCAGTGTCATAAAGCCTAGTGA
AATTCTAGCCTCTCAACCATGTGTTTCTGTATGACGAGTTATCGCGCAGA
GAAGCATCATGGGGCTTGTATTCCATAACATAGCTGTGGGGCAGCTTTAA
GTGCCGTTTGATAGAATCTCTAAGAGCCATCACAGCCTGATGATCAGATG
CATTGCGGTTCCACACACTCAATATATCTTCATTGAATCGAATGCTTAGG
ACTGCACCACATATGTTATCACCATAGTCAAGCTGGTCACCCACCAAGGC
AAGAACCAGATCTTCCCAAAAGCGACCTGATACAACTTTCTTGAACCTTA
TTATCCATTTACCGCCATTGCAATTTGCAGAGTCCTCCCATAATGGGCGA
ATTCCTTCCTTGAAAAGATGCAAATCTGTAGGGCTTGGCAACAAAGAAGG
ACGAGCCAAGTGGCAATAGCAGACCCAAAAGCCTTCAACAGTACTGAAGT
CCACAATTTTCTTTATGTTGTCCTCATAGGATGTTTGAGTTCGAACTCCA
GGTGTTCGACGAGTGT
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