CN181592

Overview
NameCN181592
Unique NameCN181592
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length676
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9892 contig Csv1_Contig9892:32..707. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN181592 vs. ExPASy Swiss-Prot
Match: CFI2_VITVI (Chalcone--flavonone isomerase 2 OS=Vitis vinifera GN=CHI2 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.539e-11
Identity = 40/99 (40.40%), Postives = 55/99 (55.56%), Query Frame = 1
Query:   46 VMVDEIPFPPQIT---TTKPLNLLGHGLTDIEIHFLQIKFTAIGVYLDPEILSHLQ-QWKGKQGSSLAQDDDFFDALVSAPVEKFFRIVVIKEIKGSQY 330
            V V+ + FPP +    +T  L L G G+  +EI    +KFTAIGVYL+   +  L  +WKGK    LA   DFF  +V+ P EKF ++  I  + G QY
Sbjct:   10 VQVENVLFPPSVKPPGSTNDLFLGGAGVRGLEIQGKFVKFTAIGVYLESSAVPTLAVKWKGKTVEELADSVDFFRDVVTGPFEKFTKVTTILPLTGRQY 108          
BLAST of CN181592 vs. ExPASy Swiss-Prot
Match: CFI1_VITVI (Chalcone--flavonone isomerase 1 OS=Vitis vinifera GN=CHI1 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.622e-11
Identity = 40/99 (40.40%), Postives = 55/99 (55.56%), Query Frame = 1
Query:   46 VMVDEIPFPPQIT---TTKPLNLLGHGLTDIEIHFLQIKFTAIGVYLDPEILSHLQ-QWKGKQGSSLAQDDDFFDALVSAPVEKFFRIVVIKEIKGSQY 330
            V V+ + FPP +    +T  L L G G+  +EI    +KFTAIGVYL+   +  L  +WKGK    LA   DFF  +V+ P EKF ++  I  + G QY
Sbjct:   10 VQVENVLFPPSVKPPGSTNDLFLGGAGVRGLEIQGKFVKFTAIGVYLENSAVPTLAVKWKGKTVEELADSVDFFRDVVTGPFEKFTKVTTILPLTGRQY 108          
BLAST of CN181592 vs. ExPASy Swiss-Prot
Match: CFI_HORVU (Chalcone--flavonone isomerase OS=Hordeum vulgare GN=CHI PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.036e-11
Identity = 58/199 (29.15%), Postives = 85/199 (42.71%), Query Frame = 1
Query:   31 MGTEVVMVDEIPFPPQITTTKPLN---LLGHGLTDIEIHFLQIKFTAIGVYL--DPEILSHLQQWKGKQGSSLAQDDDFFDALVSAPVEKFFRIVVIKEIKGSQYGVQL-ESAVRDRLXXXXXXXXXXXXXXXXXXXFFQSKYFKKDSVIAYHFPATSPTAEIVFTSEGKEDSKIKVENANVVEMIKKWYLGGARGVSP 609
            M    + VD + FPP        +   L G G+  +EI    IKFTAIGVYL  D  + +   +W GK  + LA D  FF  +V+   EKF R+ +I  + G+QY  ++ E+ V                       F    +    S++  H PA   T      S   E   + +ENA + E + +  + G  GVSP
Sbjct:    1 MAVSELEVDGVVFPPLARPPGSAHAHFLAGAGVRGMEIGGHFIKFTAIGVYLQADAAVSALAAKWAGKPAADLASDAAFFRDVVTGEFEKFTRVTMILPLTGAQYSDKVTENCVAYWKAAGVYTDAEAAAVDKFKEAFGPHSFAPGASILFTHSPAGVLTVAFSKDSSVPESGGVAIENARLCEAVLESII-GEHGVSP 198          
The following BLAST results are available for this feature:
BLAST of CN181592 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
CFI2_VITVI3.539e-1140.40Chalcone--flavonone isomerase 2 OS=Vitis vinifera ... [more]
CFI1_VITVI4.622e-1140.40Chalcone--flavonone isomerase 1 OS=Vitis vinifera ... [more]
CFI_HORVU6.036e-1129.15Chalcone--flavonone isomerase OS=Hordeum vulgare G... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001C23_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001C23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181592 ID=CN181592; Name=CN181592; organism=Citrus sinensis; type=EST; length=676bp
ATTTTCCATAGTTTCCCACTAAAGATTACCATGGGCACTGAAGTTGTAAT
GGTGGATGAAATCCCATTTCCTCCTCAGATCACCACCACCAAGCCGTTGA
ACCTTCTGGGTCATGGTTTAACAGACATTGAGATACACTTTCTCCAAATC
AAGTTCACGGCAATTGGAGTCTACTTGGATCCTGAAATTTTGAGTCACTT
GCAACAGTGGAAGGGCAAACAGGGAAGTTCCCTTGCACAAGATGATGACT
TCTTTGATGCTCTTGTCTCTGCTCCAGTAGAGAAATTTTTTAGAATTGTT
GTGATCAAGGAGATCAAGGGGTCACAATATGGGGTTCAGTTAGAAAGTGC
GGTGAGGGACAGATTGGCCGAAGCTGACAAATATGAAGAAGAGGAAGAAT
CTGCCCTTGAGAAAATCGTTGAATTCTTCCAATCCAAGTATTTTAAGAAG
GACTCTGTGATTGCTTATCATTTTCCGGCAACATCCCCTACTGCTGAGAT
AGTGTTTACAAGTGAAGGAAAGGAGGACTCAAAAATCAAAGTGGAGAATG
CGAATGTGGTTGAGATGATCAAGAAATGGTACTTGGGTGGAGCAAGGGGA
GTGTCTCCTACAACAACATCATCTCTAGCCAATACTCTCTCAGCTGAGTT
ATCAAAATGAAGCAGCTCTGCGCTTT
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