CN188627

Overview
NameCN188627
Unique NameCN188627
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length491
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CN188627 vs. ExPASy Swiss-Prot
Match: UBIQ_ARATH (Ubiquitin OS=Arabidopsis thaliana GN=UBQ1 PE=1 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 3.550e-36
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = -3 
Query:  115 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 342
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 98.9821 bits (245), Expect = 1.226e-20
Identity = 48/49 (97.96%), Postives = 48/49 (97.96%), Query Frame = -3 
Query:  343 AKIQDKEGIPPDQQRFIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 489
            AKIQDKEGIPPDQQR IFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:   28 AKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CN188627 vs. ExPASy Swiss-Prot
Match: UBIQ_COPCO (Ubiquitin OS=Coprinus congregatus PE=1 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 7.908e-36
Identity = 75/76 (98.68%), Postives = 76/76 (100.00%), Query Frame = -3 
Query:  115 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 342
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 97.8265 bits (242), Expect = 2.731e-20
Identity = 47/49 (95.92%), Postives = 48/49 (97.96%), Query Frame = -3 
Query:  343 AKIQDKEGIPPDQQRFIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 489
            AKIQDKEGIPPDQQR IFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   28 AKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CN188627 vs. ExPASy Swiss-Prot
Match: UBIQ_CHLRE (Ubiquitin OS=Chlamydomonas reinhardtii GN=UBI1 PE=1 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 1.033e-35
Identity = 75/76 (98.68%), Postives = 76/76 (100.00%), Query Frame = -3 
Query:  115 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 342
            MQIFVKTLTGKTITLEVESSDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 98.9821 bits (245), Expect = 1.226e-20
Identity = 48/49 (97.96%), Postives = 48/49 (97.96%), Query Frame = -3 
Query:  343 AKIQDKEGIPPDQQRFIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 489
            AKIQDKEGIPPDQQR IFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:   28 AKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CN188627 vs. ExPASy Swiss-Prot
Match: UBIQ_YEAST (Ubiquitin OS=Saccharomyces cerevisiae GN=UBI1 PE=1 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 1.762e-35
Identity = 74/76 (97.37%), Postives = 76/76 (100.00%), Query Frame = -3 
Query:  115 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 342
            MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 96.6709 bits (239), Expect = 6.083e-20
Identity = 46/49 (93.88%), Postives = 48/49 (97.96%), Query Frame = -3 
Query:  343 AKIQDKEGIPPDQQRFIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 489
            +KIQDKEGIPPDQQR IFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   28 SKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CN188627 vs. ExPASy Swiss-Prot
Match: UBIQ_SCHPO (Ubiquitin OS=Schizosaccharomyces pombe GN=ubi1 PE=1 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 1.762e-35
Identity = 74/76 (97.37%), Postives = 76/76 (100.00%), Query Frame = -3 
Query:  115 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 342
            MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 96.6709 bits (239), Expect = 6.083e-20
Identity = 46/49 (93.88%), Postives = 48/49 (97.96%), Query Frame = -3 
Query:  343 AKIQDKEGIPPDQQRFIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 489
            +KIQDKEGIPPDQQR IFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   28 SKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CN188627 vs. ExPASy Swiss-Prot
Match: UBIQ_KLULA (Ubiquitin OS=Kluyveromyces lactis GN=ubi3 PE=1 SV=2)

HSP 1 Score: 148.288 bits (373), Expect = 1.762e-35
Identity = 74/76 (97.37%), Postives = 76/76 (100.00%), Query Frame = -3 
Query:  115 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 342
            MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 96.6709 bits (239), Expect = 6.083e-20
Identity = 46/49 (93.88%), Postives = 48/49 (97.96%), Query Frame = -3 
Query:  343 AKIQDKEGIPPDQQRFIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 489
            +KIQDKEGIPPDQQR IFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   28 SKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CN188627 vs. ExPASy Swiss-Prot
Match: UBIQ_CRYNE (Ubiquitin OS=Cryptococcus neoformans GN=UBI1 PE=1 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 1.762e-35
Identity = 74/76 (97.37%), Postives = 76/76 (100.00%), Query Frame = -3 
Query:  115 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 342
            MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 96.6709 bits (239), Expect = 6.083e-20
Identity = 46/49 (93.88%), Postives = 48/49 (97.96%), Query Frame = -3 
Query:  343 AKIQDKEGIPPDQQRFIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 489
            +KIQDKEGIPPDQQR IFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   28 SKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CN188627 vs. ExPASy Swiss-Prot
Match: UBIQ_CANAL (Ubiquitin OS=Candida albicans GN=UBI1 PE=1 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 1.762e-35
Identity = 74/76 (97.37%), Postives = 76/76 (100.00%), Query Frame = -3 
Query:  115 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 342
            MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 96.6709 bits (239), Expect = 6.083e-20
Identity = 46/49 (93.88%), Postives = 48/49 (97.96%), Query Frame = -3 
Query:  343 AKIQDKEGIPPDQQRFIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 489
            +KIQDKEGIPPDQQR IFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   28 SKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CN188627 vs. ExPASy Swiss-Prot
Match: UBL1_ORYSJ (Ubiquitin-like protein 1 OS=Oryza sativa subsp. japonica GN=UBL1 PE=3 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 2.301e-35
Identity = 74/76 (97.37%), Postives = 75/76 (98.68%), Query Frame = -3 
Query:  115 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 342
            MQIFVKTLTGKTITLEVESSDTI NVKAK+QDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIQNVKAKVQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 98.5969 bits (244), Expect = 1.601e-20
Identity = 47/49 (95.92%), Postives = 48/49 (97.96%), Query Frame = -3 
Query:  343 AKIQDKEGIPPDQQRFIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 489
            AK+QDKEGIPPDQQR IFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:   28 AKVQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CN188627 vs. ExPASy Swiss-Prot
Match: UBIQ_NEUCR (Ubiquitin OS=Neurospora crassa GN=ubi-1 PE=1 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 3.005e-35
Identity = 74/76 (97.37%), Postives = 75/76 (98.68%), Query Frame = -3 
Query:  115 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 342
            MQIFVKTLTGKTITLEVESSDTIDNVK KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 96.2857 bits (238), Expect = 7.945e-20
Identity = 46/48 (95.83%), Postives = 47/48 (97.92%), Query Frame = -3 
Query:  343 KIQDKEGIPPDQQRFIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 486
            KIQDKEGIPPDQQR IFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   29 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
The following BLAST results are available for this feature:
BLAST of CN188627 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 95
Match NameE-valueIdentityDescription
UBIQ_ARATH3.550e-36100.00Ubiquitin OS=Arabidopsis thaliana GN=UBQ1 PE=1 SV=... [more]
UBIQ_COPCO7.908e-3698.68Ubiquitin OS=Coprinus congregatus PE=1 SV=1[more]
UBIQ_CHLRE1.033e-3598.68Ubiquitin OS=Chlamydomonas reinhardtii GN=UBI1 PE=... [more]
UBIQ_YEAST1.762e-3597.37Ubiquitin OS=Saccharomyces cerevisiae GN=UBI1 PE=1... [more]
UBIQ_SCHPO1.762e-3597.37Ubiquitin OS=Schizosaccharomyces pombe GN=ubi1 PE=... [more]
UBIQ_KLULA1.762e-3597.37Ubiquitin OS=Kluyveromyces lactis GN=ubi3 PE=1 SV=... [more]
UBIQ_CRYNE1.762e-3597.37Ubiquitin OS=Cryptococcus neoformans GN=UBI1 PE=1 ... [more]
UBIQ_CANAL1.762e-3597.37Ubiquitin OS=Candida albicans GN=UBI1 PE=1 SV=1[more]
UBL1_ORYSJ2.301e-3597.37Ubiquitin-like protein 1 OS=Oryza sativa subsp. ja... [more]
UBIQ_NEUCR3.005e-3597.37Ubiquitin OS=Neurospora crassa GN=ubi-1 PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006H02_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006H02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188627 ID=CN188627; Name=CN188627; organism=Citrus sinensis; type=EST; length=491bp
CCAAAATAAACTTCAAATAGTTATTTAAGCCATTTCACCAATAGCAAGCA
AACATTAACCAAGACAAACCGAAGCAAATAAGACACACACACACCCAGAT
GACCAAACTCAGAAACCTCCACGGAGACGGAGCACAAGATGCAGAGTGGA
CTCCTTCTGGATGTTGTAATCAGCAAGAGTCCTTCCATCCTCAAGTTGTT
TTCCAGCAAAGATCAACCTCTGCTGGTCTGGGGGAATCCCCTCCTTATCC
TGGATCTTAGCCTTCACATTGTCAATTGTGTCCGAACTCTCAACCTCCAA
TGTGATGGTTTTCCCAGTGAGTGTCTTCACAAAAATCTGCATACCACCAC
GGAGGCGAAGAACCAAGTGAAGAGTGGATTCTTTCTGGATGTTATAGTCT
GCAAGAGTCCTTCCATCTTCAAGCTGCTTTCCAGCAAAAATGAACCTCTG
CTGATCTGGTGGGATACCCTCCTTGTCTTGAATTTTTGCTT
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