CN188627 | Citrus Genome Database

Overview


Name	CN188627
Unique Name	CN188627
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	491

Libraries


Library Name	Type
Washington Navel Orange Stored Fruit Pulp cDNA Library	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
CN188627_ssr83	microsatellite	CN188627_ssr83:83..94.	BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig9569	contig	Csv1_Contig9569:1051..1541.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

BLAST of CN188627 vs. ExPASy Swiss-Prot
Match: UBIQ_HUMAN (Ubiquitin OS=Homo sapiens GN=RPS27A PE=1 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 8.744e-35
Identity = 73/76 (96.05%), Postives = 75/76 (98.68%), Query Frame = -3

Query:  115 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 342
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 97.8265 bits (242), Expect = 2.731e-20
Identity = 47/49 (95.92%), Postives = 48/49 (97.96%), Query Frame = -3

Query:  343 AKIQDKEGIPPDQQRFIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 489
            AKIQDKEGIPPDQQR IFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   28 AKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

BLAST of CN188627 vs. ExPASy Swiss-Prot
Match: UBIQ_HORSE (Ubiquitin OS=Equus caballus GN=UBB PE=3 SV=2)

HSP 1 Score: 145.976 bits (367), Expect = 8.744e-35
Identity = 73/76 (96.05%), Postives = 75/76 (98.68%), Query Frame = -3

Query:  115 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 342
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 97.8265 bits (242), Expect = 2.731e-20
Identity = 47/49 (95.92%), Postives = 48/49 (97.96%), Query Frame = -3

Query:  343 AKIQDKEGIPPDQQRFIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 489
            AKIQDKEGIPPDQQR IFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   28 AKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

BLAST of CN188627 vs. ExPASy Swiss-Prot
Match: UBIQ_GORGO (Ubiquitin OS=Gorilla gorilla gorilla GN=UBB PE=3 SV=2)

HSP 1 Score: 145.976 bits (367), Expect = 8.744e-35
Identity = 73/76 (96.05%), Postives = 75/76 (98.68%), Query Frame = -3

Query:  115 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 342
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 97.8265 bits (242), Expect = 2.731e-20
Identity = 47/49 (95.92%), Postives = 48/49 (97.96%), Query Frame = -3

Query:  343 AKIQDKEGIPPDQQRFIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 489
            AKIQDKEGIPPDQQR IFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   28 AKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

BLAST of CN188627 vs. ExPASy Swiss-Prot
Match: UBIQ_FELCA (Ubiquitin OS=Felis catus GN=UBA52 PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 8.744e-35
Identity = 73/76 (96.05%), Postives = 75/76 (98.68%), Query Frame = -3

Query:  115 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 342
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 97.8265 bits (242), Expect = 2.731e-20
Identity = 47/49 (95.92%), Postives = 48/49 (97.96%), Query Frame = -3

Query:  343 AKIQDKEGIPPDQQRFIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 489
            AKIQDKEGIPPDQQR IFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   28 AKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

BLAST of CN188627 vs. ExPASy Swiss-Prot
Match: UBIQ_DROME (Ubiquitin OS=Drosophila melanogaster GN=RpL40 PE=1 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 8.744e-35
Identity = 73/76 (96.05%), Postives = 75/76 (98.68%), Query Frame = -3

Query:  115 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 342
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 97.8265 bits (242), Expect = 2.731e-20
Identity = 47/49 (95.92%), Postives = 48/49 (97.96%), Query Frame = -3

Query:  343 AKIQDKEGIPPDQQRFIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 489
            AKIQDKEGIPPDQQR IFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   28 AKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

BLAST of CN188627 vs. ExPASy Swiss-Prot
Match: UBIQ_CRIGR (Ubiquitin OS=Cricetulus griseus PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 8.744e-35
Identity = 73/76 (96.05%), Postives = 75/76 (98.68%), Query Frame = -3

Query:  115 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 342
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 97.8265 bits (242), Expect = 2.731e-20
Identity = 47/49 (95.92%), Postives = 48/49 (97.96%), Query Frame = -3

Query:  343 AKIQDKEGIPPDQQRFIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 489
            AKIQDKEGIPPDQQR IFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   28 AKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

BLAST of CN188627 vs. ExPASy Swiss-Prot
Match: UBIQ_CHICK (Ubiquitin OS=Gallus gallus GN=UBA52 PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 8.744e-35
Identity = 73/76 (96.05%), Postives = 75/76 (98.68%), Query Frame = -3

Query:  115 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 342
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 97.8265 bits (242), Expect = 2.731e-20
Identity = 47/49 (95.92%), Postives = 48/49 (97.96%), Query Frame = -3

Query:  343 AKIQDKEGIPPDQQRFIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 489
            AKIQDKEGIPPDQQR IFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   28 AKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

BLAST of CN188627 vs. ExPASy Swiss-Prot
Match: UBIQ_CERCA (Ubiquitin OS=Ceratitis capitata PE=1 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 8.744e-35
Identity = 73/76 (96.05%), Postives = 75/76 (98.68%), Query Frame = -3

Query:  115 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 342
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 97.8265 bits (242), Expect = 2.731e-20
Identity = 47/49 (95.92%), Postives = 48/49 (97.96%), Query Frame = -3

Query:  343 AKIQDKEGIPPDQQRFIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 489
            AKIQDKEGIPPDQQR IFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   28 AKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

BLAST of CN188627 vs. ExPASy Swiss-Prot
Match: UBIQ_CAVPO (Ubiquitin OS=Cavia porcellus GN=RPS27A PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 8.744e-35
Identity = 73/76 (96.05%), Postives = 75/76 (98.68%), Query Frame = -3

Query:  115 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 342
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 97.8265 bits (242), Expect = 2.731e-20
Identity = 47/49 (95.92%), Postives = 48/49 (97.96%), Query Frame = -3

Query:  343 AKIQDKEGIPPDQQRFIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 489
            AKIQDKEGIPPDQQR IFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   28 AKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

BLAST of CN188627 vs. ExPASy Swiss-Prot
Match: UBIQ_CANFA (Ubiquitin OS=Canis familiaris GN=UBA52 PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 8.744e-35
Identity = 73/76 (96.05%), Postives = 75/76 (98.68%), Query Frame = -3

Query:  115 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 342
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 97.8265 bits (242), Expect = 2.731e-20
Identity = 47/49 (95.92%), Postives = 48/49 (97.96%), Query Frame = -3

Query:  343 AKIQDKEGIPPDQQRFIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 489
            AKIQDKEGIPPDQQR IFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   28 AKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

The following BLAST results are available for this feature:

BLAST of CN188627 vs. ExPASy Swiss-Prot

BLAST of CN188627 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 95


Match Name	E-value	Identity	Description
UBIQ_HUMAN	8.744e-35	96.05	Ubiquitin OS=Homo sapiens GN=RPS27A PE=1 SV=1	[more]
UBIQ_HORSE	8.744e-35	96.05	Ubiquitin OS=Equus caballus GN=UBB PE=3 SV=2	[more]
UBIQ_GORGO	8.744e-35	96.05	Ubiquitin OS=Gorilla gorilla gorilla GN=UBB PE=3 S...	[more]
UBIQ_FELCA	8.744e-35	96.05	Ubiquitin OS=Felis catus GN=UBA52 PE=3 SV=1	[more]
UBIQ_DROME	8.744e-35	96.05	Ubiquitin OS=Drosophila melanogaster GN=RpL40 PE=1...	[more]
UBIQ_CRIGR	8.744e-35	96.05	Ubiquitin OS=Cricetulus griseus PE=3 SV=1	[more]
UBIQ_CHICK	8.744e-35	96.05	Ubiquitin OS=Gallus gallus GN=UBA52 PE=3 SV=1	[more]
UBIQ_CERCA	8.744e-35	96.05	Ubiquitin OS=Ceratitis capitata PE=1 SV=1	[more]
UBIQ_CAVPO	8.744e-35	96.05	Ubiquitin OS=Cavia porcellus GN=RPS27A PE=3 SV=1	[more]
UBIQ_CANFA	8.744e-35	96.05	Ubiquitin OS=Canis familiaris GN=UBA52 PE=3 SV=1	[more]

Pages

Properties


Property Name	Value
Genbank description	UCRCS05_0006H02_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006H02, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CN188627 ID=CN188627; Name=CN188627; organism=Citrus sinensis; type=EST; length=491bp
CCAAAATAAACTTCAAATAGTTATTTAAGCCATTTCACCAATAGCAAGCA
AACATTAACCAAGACAAACCGAAGCAAATAAGACACACACACACCCAGAT
GACCAAACTCAGAAACCTCCACGGAGACGGAGCACAAGATGCAGAGTGGA
CTCCTTCTGGATGTTGTAATCAGCAAGAGTCCTTCCATCCTCAAGTTGTT
TTCCAGCAAAGATCAACCTCTGCTGGTCTGGGGGAATCCCCTCCTTATCC
TGGATCTTAGCCTTCACATTGTCAATTGTGTCCGAACTCTCAACCTCCAA
TGTGATGGTTTTCCCAGTGAGTGTCTTCACAAAAATCTGCATACCACCAC
GGAGGCGAAGAACCAAGTGAAGAGTGGATTCTTTCTGGATGTTATAGTCT
GCAAGAGTCCTTCCATCTTCAAGCTGCTTTCCAGCAAAAATGAACCTCTG
CTGATCTGGTGGGATACCCTCCTTGTCTTGAATTTTTGCTT