CN188627

Overview
NameCN188627
Unique NameCN188627
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length491
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CN188627 vs. ExPASy Swiss-Prot
Match: UBIQ_CAMDR (Ubiquitin OS=Camelus dromedarius PE=3 SV=2)

HSP 1 Score: 145.976 bits (367), Expect = 8.744e-35
Identity = 73/76 (96.05%), Postives = 75/76 (98.68%), Query Frame = -3 
Query:  115 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 342
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 97.8265 bits (242), Expect = 2.731e-20
Identity = 47/49 (95.92%), Postives = 48/49 (97.96%), Query Frame = -3 
Query:  343 AKIQDKEGIPPDQQRFIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 489
            AKIQDKEGIPPDQQR IFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   28 AKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CN188627 vs. ExPASy Swiss-Prot
Match: UBIQ_BOVIN (Ubiquitin OS=Bos taurus GN=RPS27A PE=1 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 8.744e-35
Identity = 73/76 (96.05%), Postives = 75/76 (98.68%), Query Frame = -3 
Query:  115 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 342
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 97.8265 bits (242), Expect = 2.731e-20
Identity = 47/49 (95.92%), Postives = 48/49 (97.96%), Query Frame = -3 
Query:  343 AKIQDKEGIPPDQQRFIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 489
            AKIQDKEGIPPDQQR IFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   28 AKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CN188627 vs. ExPASy Swiss-Prot
Match: UBIQ_TETPY (Ubiquitin OS=Tetrahymena pyriformis GN=TUF11 PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 1.142e-34
Identity = 72/76 (94.74%), Postives = 76/76 (100.00%), Query Frame = -3 
Query:  115 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 342
            MQIFVKTLTGKTITL+VE+SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLDVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 97.8265 bits (242), Expect = 2.731e-20
Identity = 47/49 (95.92%), Postives = 48/49 (97.96%), Query Frame = -3 
Query:  343 AKIQDKEGIPPDQQRFIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 489
            AKIQDKEGIPPDQQR IFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   28 AKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CN188627 vs. ExPASy Swiss-Prot
Match: UBIQ_ENCCU (Ubiquitin OS=Encephalitozoon cuniculi GN=ECU02_0740i PE=1 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 1.142e-34
Identity = 72/77 (93.51%), Postives = 76/77 (98.70%), Query Frame = -3 
Query:  112 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF 342
            MQIFVKTLTGKTITLEVE SD+I+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG+
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDSIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGY 77

HSP 2 Score: 97.8265 bits (242), Expect = 2.731e-20
Identity = 47/49 (95.92%), Postives = 48/49 (97.96%), Query Frame = -3 
Query:  343 AKIQDKEGIPPDQQRFIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 489
            AKIQDKEGIPPDQQR IFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   28 AKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CN188627 vs. ExPASy Swiss-Prot
Match: UBIQ_SHEEP (Ubiquitin OS=Ovis aries GN=UBA52 PE=3 SV=2)

HSP 1 Score: 145.206 bits (365), Expect = 1.491e-34
Identity = 72/76 (94.74%), Postives = 75/76 (98.68%), Query Frame = -3 
Query:  115 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 342
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLR+RGG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRMRGG 76

HSP 2 Score: 97.0561 bits (240), Expect = 4.658e-20
Identity = 46/49 (93.88%), Postives = 48/49 (97.96%), Query Frame = -3 
Query:  343 AKIQDKEGIPPDQQRFIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 489
            AKIQDKEGIPPDQQR IFAGKQLEDGRTL+DYNIQKESTLHLVLR+RGG
Sbjct:   28 AKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRMRGG 76
[Close]
BLAST of CN188627 vs. ExPASy Swiss-Prot
Match: UBIQ_EIMBO (Ubiquitin OS=Eimeria bovis PE=2 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 1.948e-34
Identity = 72/76 (94.74%), Postives = 75/76 (98.68%), Query Frame = -3 
Query:  115 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 342
            MQIFVKTLTGKTITL+VE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLDVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 97.8265 bits (242), Expect = 2.731e-20
Identity = 47/49 (95.92%), Postives = 48/49 (97.96%), Query Frame = -3 
Query:  343 AKIQDKEGIPPDQQRFIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 489
            AKIQDKEGIPPDQQR IFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   28 AKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CN188627 vs. ExPASy Swiss-Prot
Match: UBIQ_TRYBB (Ubiquitin OS=Trypanosoma brucei brucei PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 2.544e-34
Identity = 72/76 (94.74%), Postives = 75/76 (98.68%), Query Frame = -3 
Query:  115 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 342
            MQIFVKTLTGKTI LEVE+SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLE+GRTLADYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTIALEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEEGRTLADYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 97.4413 bits (241), Expect = 3.566e-20
Identity = 47/49 (95.92%), Postives = 48/49 (97.96%), Query Frame = -3 
Query:  343 AKIQDKEGIPPDQQRFIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 489
            AKIQDKEGIPPDQQR IFAGKQLE+GRTLADYNIQKESTLHLVLRLRGG
Sbjct:   28 AKIQDKEGIPPDQQRLIFAGKQLEEGRTLADYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CN188627 vs. ExPASy Swiss-Prot
Match: UBIQ_STRPU (Ubiquitin OS=Strongylocentrotus purpuratus PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 2.544e-34
Identity = 72/76 (94.74%), Postives = 75/76 (98.68%), Query Frame = -3 
Query:  115 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 342
            MQIFVKTLTGKTITLEVE SD+I+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDSIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 97.8265 bits (242), Expect = 2.731e-20
Identity = 47/49 (95.92%), Postives = 48/49 (97.96%), Query Frame = -3 
Query:  343 AKIQDKEGIPPDQQRFIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 489
            AKIQDKEGIPPDQQR IFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   28 AKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CN188627 vs. ExPASy Swiss-Prot
Match: UBIQ_DICDI (Ubiquitin OS=Dictyostelium discoideum GN=ubqA PE=1 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 2.544e-34
Identity = 72/76 (94.74%), Postives = 74/76 (97.37%), Query Frame = -3 
Query:  115 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 342
            MQIFVKTLTGKTITLEVE SD I+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVEGSDNIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 97.8265 bits (242), Expect = 2.731e-20
Identity = 47/49 (95.92%), Postives = 48/49 (97.96%), Query Frame = -3 
Query:  343 AKIQDKEGIPPDQQRFIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 489
            AKIQDKEGIPPDQQR IFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   28 AKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CN188627 vs. ExPASy Swiss-Prot
Match: UBIQ_PHYIN (Ubiquitin OS=Phytophthora infestans PE=1 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 7.402e-34
Identity = 71/76 (93.42%), Postives = 74/76 (97.37%), Query Frame = -3 
Query:  115 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 342
            MQIFVKTLTGKTITL+VE SD+IDNVK KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLDVEPSDSIDNVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 96.2857 bits (238), Expect = 7.945e-20
Identity = 46/48 (95.83%), Postives = 47/48 (97.92%), Query Frame = -3 
Query:  343 KIQDKEGIPPDQQRFIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 486
            KIQDKEGIPPDQQR IFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   29 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
The following BLAST results are available for this feature:
BLAST of CN188627 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 95
Match NameE-valueIdentityDescription
UBIQ_CAMDR8.744e-3596.05Ubiquitin OS=Camelus dromedarius PE=3 SV=2[more]
UBIQ_BOVIN8.744e-3596.05Ubiquitin OS=Bos taurus GN=RPS27A PE=1 SV=1[more]
UBIQ_TETPY1.142e-3494.74Ubiquitin OS=Tetrahymena pyriformis GN=TUF11 PE=3 ... [more]
UBIQ_ENCCU1.142e-3493.51Ubiquitin OS=Encephalitozoon cuniculi GN=ECU02_074... [more]
UBIQ_SHEEP1.491e-3494.74Ubiquitin OS=Ovis aries GN=UBA52 PE=3 SV=2[more]
UBIQ_EIMBO1.948e-3494.74Ubiquitin OS=Eimeria bovis PE=2 SV=1[more]
UBIQ_TRYBB2.544e-3494.74Ubiquitin OS=Trypanosoma brucei brucei PE=3 SV=1[more]
UBIQ_STRPU2.544e-3494.74Ubiquitin OS=Strongylocentrotus purpuratus PE=3 SV... [more]
UBIQ_DICDI2.544e-3494.74Ubiquitin OS=Dictyostelium discoideum GN=ubqA PE=1... [more]
UBIQ_PHYIN7.402e-3493.42Ubiquitin OS=Phytophthora infestans PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006H02_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006H02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188627 ID=CN188627; Name=CN188627; organism=Citrus sinensis; type=EST; length=491bp
CCAAAATAAACTTCAAATAGTTATTTAAGCCATTTCACCAATAGCAAGCA
AACATTAACCAAGACAAACCGAAGCAAATAAGACACACACACACCCAGAT
GACCAAACTCAGAAACCTCCACGGAGACGGAGCACAAGATGCAGAGTGGA
CTCCTTCTGGATGTTGTAATCAGCAAGAGTCCTTCCATCCTCAAGTTGTT
TTCCAGCAAAGATCAACCTCTGCTGGTCTGGGGGAATCCCCTCCTTATCC
TGGATCTTAGCCTTCACATTGTCAATTGTGTCCGAACTCTCAACCTCCAA
TGTGATGGTTTTCCCAGTGAGTGTCTTCACAAAAATCTGCATACCACCAC
GGAGGCGAAGAACCAAGTGAAGAGTGGATTCTTTCTGGATGTTATAGTCT
GCAAGAGTCCTTCCATCTTCAAGCTGCTTTCCAGCAAAAATGAACCTCTG
CTGATCTGGTGGGATACCCTCCTTGTCTTGAATTTTTGCTT
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