CN188627 | Citrus Genome Database

Overview


Name	CN188627
Unique Name	CN188627
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	491

Libraries


Library Name	Type
Washington Navel Orange Stored Fruit Pulp cDNA Library	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of CN188627 vs. ExPASy Swiss-Prot
Match: UBIQ_LEIMA (Ubiquitin OS=Leishmania major GN=UB-EP52 PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 9.667e-34
Identity = 71/76 (93.42%), Postives = 74/76 (97.37%), Query Frame = -3

Query:  115 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 342
            MQIFVKTLTGKTI LEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLE+GRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTIALEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEEGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 96.2857 bits (238), Expect = 7.945e-20
Identity = 46/49 (93.88%), Postives = 48/49 (97.96%), Query Frame = -3

Query:  343 AKIQDKEGIPPDQQRFIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 489
            AKIQDKEGIPPDQQR IFAGKQLE+GRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   28 AKIQDKEGIPPDQQRLIFAGKQLEEGRTLSDYNIQKESTLHLVLRLRGG 76

[Close]

BLAST of CN188627 vs. ExPASy Swiss-Prot
Match: UBIQ_LEITA (Ubiquitin OS=Leishmania tarentolae GN=UB-EP52 PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 3.110e-32
Identity = 69/76 (90.79%), Postives = 72/76 (94.74%), Query Frame = -3

Query:  115 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 342
            MQIFVKTLTG TI LEVE SDTI+NVKAKIQDKEGIPPDQQRLIFA KQLE+GRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGTTIALEVEPSDTIENVKAKIQDKEGIPPDQQRLIFADKQLEEGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 93.5893 bits (231), Expect = 5.150e-19
Identity = 45/49 (91.84%), Postives = 47/49 (95.92%), Query Frame = -3

Query:  343 AKIQDKEGIPPDQQRFIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 489
            AKIQDKEGIPPDQQR IFA KQLE+GRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   28 AKIQDKEGIPPDQQRLIFADKQLEEGRTLSDYNIQKESTLHLVLRLRGG 76

[Close]

BLAST of CN188627 vs. ExPASy Swiss-Prot
Match: UBIL_NPVOP (Ubiquitin-like protein OS=Orgyia pseudotsugata multicapsid polyhedrosis virus GN=V-UBI PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 1.597e-28
Identity = 61/76 (80.26%), Postives = 67/76 (88.16%), Query Frame = -3

Query:  115 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 342
            MQIFVKTLTGKTIT+E E  DT+  VK KI DKEG+P DQQRLI+AGKQLED +TLADYNIQKESTLH+VLRLRGG
Sbjct:    1 MQIFVKTLTGKTITVETEPGDTVGQVKQKIADKEGVPVDQQRLIYAGKQLEDAQTLADYNIQKESTLHMVLRLRGG 76

HSP 2 Score: 85.5001 bits (210), Expect = 1.402e-16
Identity = 40/48 (83.33%), Postives = 44/48 (91.67%), Query Frame = -3

Query:  343 KIQDKEGIPPDQQRFIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 486
            KI DKEG+P DQQR I+AGKQLED +TLADYNIQKESTLH+VLRLRGG
Sbjct:   29 KIADKEGVPVDQQRLIYAGKQLEDAQTLADYNIQKESTLHMVLRLRGG 76

[Close]

BLAST of CN188627 vs. ExPASy Swiss-Prot
Match: UBIL_NPVAC (Ubiquitin-like protein OS=Autographa californica nuclear polyhedrosis virus GN=V-UBI PE=3 SV=2)

HSP 1 Score: 123.635 bits (309), Expect = 4.647e-28
Identity = 58/77 (75.32%), Postives = 69/77 (89.61%), Query Frame = -3

Query:  112 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF 342
            MQIF+KTLTGKTIT E E ++T+ ++K KI DKEG+P DQQRLIFAGKQLED +T+ADYNIQKESTLH+VLRLRGG+
Sbjct:    1 MQIFIKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYNIQKESTLHMVLRLRGGY 77

HSP 2 Score: 86.2705 bits (212), Expect = 8.222e-17
Identity = 40/48 (83.33%), Postives = 44/48 (91.67%), Query Frame = -3

Query:  343 KIQDKEGIPPDQQRFIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 486
            KI DKEG+P DQQR IFAGKQLED +T+ADYNIQKESTLH+VLRLRGG
Sbjct:   29 KIADKEGVPVDQQRLIFAGKQLEDSKTMADYNIQKESTLHMVLRLRGG 76

[Close]

BLAST of CN188627 vs. ExPASy Swiss-Prot
Match: UBIQ_LUMTE (Ubiquitin (Fragment) OS=Lumbricus terrestris PE=1 SV=2)

HSP 1 Score: 120.553 bits (301), Expect = 3.934e-27
Identity = 60/63 (95.24%), Postives = 62/63 (98.41%), Query Frame = -3

Query:  121 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 309
            TITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLR
Sbjct:    1 TITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 63

HSP 2 Score: 93.2041 bits (230), Expect = 6.726e-19
Identity = 45/47 (95.74%), Postives = 46/47 (97.87%), Query Frame = -3

Query:  349 AKIQDKEGIPPDQQRFIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 489
            AKIQDKEGIPPDQQR IFAGKQLEDGRTL+DYNIQKESTLHLVLRLR
Sbjct:   17 AKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 63

[Close]

BLAST of CN188627 vs. ExPASy Swiss-Prot
Match: RUB1_ARATH (NEDD8-like protein RUB1 OS=Arabidopsis thaliana GN=RUB1 PE=1 SV=2)

HSP 1 Score: 101.293 bits (251), Expect = 2.470e-21
Identity = 48/75 (64.00%), Postives = 60/75 (80.00%), Query Frame = -3

Query:  112 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF 336
            I VKTLTGK I +++E +DTID +K ++++KEGIPP QQRLI+AGKQL D +T  DYNI+  S LHLVL LRGGF
Sbjct:    3 IKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNIEGGSVLHLVLALRGGF 77

HSP 2 Score: 67.781 bits (164), Expect = 3.026e-11
Identity = 31/48 (64.58%), Postives = 38/48 (79.17%), Query Frame = -3

Query:  343 KIQDKEGIPPDQQRFIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 486
            ++++KEGIPP QQR I+AGKQL D +T  DYNI+  S LHLVL LRGG
Sbjct:   29 RVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNIEGGSVLHLVLALRGG 76

[Close]

BLAST of CN188627 vs. ExPASy Swiss-Prot
Match: RUB1_DESAN (NEDD8-like protein RUB1 OS=Deschampsia antarctica GN=RUB1 PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 4.213e-21
Identity = 48/75 (64.00%), Postives = 60/75 (80.00%), Query Frame = -3

Query:  112 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF 336
            I VKTLTGK I +++E +DTID VK ++++KEGIPP QQRLI+AGKQL D +T  DYNI+  S LHLVL LRGG+
Sbjct:    3 IKVKTLTGKEIEIDIEPTDTIDRVKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNIEGGSVLHLVLALRGGY 77

HSP 2 Score: 67.781 bits (164), Expect = 3.026e-11
Identity = 31/48 (64.58%), Postives = 38/48 (79.17%), Query Frame = -3

Query:  343 KIQDKEGIPPDQQRFIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 486
            ++++KEGIPP QQR I+AGKQL D +T  DYNI+  S LHLVL LRGG
Sbjct:   29 RVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNIEGGSVLHLVLALRGG 76

[Close]

BLAST of CN188627 vs. ExPASy Swiss-Prot
Match: RUB1_ORYSJ (NEDD8-like protein RUB1 OS=Oryza sativa subsp. japonica GN=RUB1 PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 5.502e-21
Identity = 47/75 (62.67%), Postives = 60/75 (80.00%), Query Frame = -3

Query:  112 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF 336
            I VKTLTGK I +++E +DTID +K ++++KEGIPP QQRLI+AGKQL D +T  DYNI+  S LHLVL LRGG+
Sbjct:    3 IKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNIEGGSVLHLVLALRGGY 77

HSP 2 Score: 67.781 bits (164), Expect = 3.026e-11
Identity = 31/48 (64.58%), Postives = 38/48 (79.17%), Query Frame = -3

Query:  343 KIQDKEGIPPDQQRFIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 486
            ++++KEGIPP QQR I+AGKQL D +T  DYNI+  S LHLVL LRGG
Sbjct:   29 RVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNIEGGSVLHLVLALRGG 76

[Close]

BLAST of CN188627 vs. ExPASy Swiss-Prot
Match: NEDD8_CAEEL (NEDD8 OS=Caenorhabditis elegans GN=ned-8 PE=1 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 9.385e-21
Identity = 47/77 (61.04%), Postives = 59/77 (76.62%), Query Frame = -3

Query:  112 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF 342
            M I VKTLTGK I L++E +D ++ +K K+++KEGIPP QQRLIFAGKQ+ D +T ADY +   S LHLVL LRGGF
Sbjct:    1 MLIKVKTLTGKEIELDIEPNDRVERIKEKVEEKEGIPPPQQRLIFAGKQMNDDKTAADYKVLGGSVLHLVLALRGGF 77

HSP 2 Score: 68.1662 bits (165), Expect = 2.317e-11
Identity = 31/48 (64.58%), Postives = 37/48 (77.08%), Query Frame = -3

Query:  343 KIQDKEGIPPDQQRFIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 486
            K+++KEGIPP QQR IFAGKQ+ D +T ADY +   S LHLVL LRGG
Sbjct:   29 KVEEKEGIPPPQQRLIFAGKQMNDDKTAADYKVLGGSVLHLVLALRGG 76

[Close]

BLAST of CN188627 vs. ExPASy Swiss-Prot
Match: RUB2_ORYSJ (NEDD8-like protein RUB2 OS=Oryza sativa subsp. japonica GN=RUB2 PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 1.226e-20
Identity = 47/74 (63.51%), Postives = 59/74 (79.73%), Query Frame = -3

Query:  115 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 336
            I VKTLTGK I +++E +DTID +K ++++KEGIPP QQRLI+AGKQL D +T  DYNI+  S LHLVL LRGG
Sbjct:    3 IKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNIEGGSVLHLVLALRGG 76

HSP 2 Score: 67.781 bits (164), Expect = 3.026e-11
Identity = 31/48 (64.58%), Postives = 38/48 (79.17%), Query Frame = -3

Query:  343 KIQDKEGIPPDQQRFIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 486
            ++++KEGIPP QQR I+AGKQL D +T  DYNI+  S LHLVL LRGG
Sbjct:   29 RVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNIEGGSVLHLVLALRGG 76

The following BLAST results are available for this feature:

BLAST of CN188627 vs. ExPASy Swiss-Prot

BLAST of CN188627 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 95


Match Name	E-value	Identity	Description
UBIQ_LEIMA	9.667e-34	93.42	Ubiquitin OS=Leishmania major GN=UB-EP52 PE=3 SV=1	[more]
UBIQ_LEITA	3.110e-32	90.79	Ubiquitin OS=Leishmania tarentolae GN=UB-EP52 PE=3...	[more]
UBIL_NPVOP	1.597e-28	80.26	Ubiquitin-like protein OS=Orgyia pseudotsugata mul...	[more]
UBIL_NPVAC	4.647e-28	75.32	Ubiquitin-like protein OS=Autographa californica n...	[more]
UBIQ_LUMTE	3.934e-27	95.24	Ubiquitin (Fragment) OS=Lumbricus terrestris PE=1 ...	[more]
RUB1_ARATH	2.470e-21	64.00	NEDD8-like protein RUB1 OS=Arabidopsis thaliana GN...	[more]
RUB1_DESAN	4.213e-21	64.00	NEDD8-like protein RUB1 OS=Deschampsia antarctica ...	[more]
RUB1_ORYSJ	5.502e-21	62.67	NEDD8-like protein RUB1 OS=Oryza sativa subsp. jap...	[more]
NEDD8_CAEEL	9.385e-21	61.04	NEDD8 OS=Caenorhabditis elegans GN=ned-8 PE=1 SV=1	[more]
RUB2_ORYSJ	1.226e-20	63.51	NEDD8-like protein RUB2 OS=Oryza sativa subsp. jap...	[more]

Pages

Properties


Property Name	Value
Genbank description	UCRCS05_0006H02_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006H02, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CN188627 ID=CN188627; Name=CN188627; organism=Citrus sinensis; type=EST; length=491bp
CCAAAATAAACTTCAAATAGTTATTTAAGCCATTTCACCAATAGCAAGCA
AACATTAACCAAGACAAACCGAAGCAAATAAGACACACACACACCCAGAT
GACCAAACTCAGAAACCTCCACGGAGACGGAGCACAAGATGCAGAGTGGA
CTCCTTCTGGATGTTGTAATCAGCAAGAGTCCTTCCATCCTCAAGTTGTT
TTCCAGCAAAGATCAACCTCTGCTGGTCTGGGGGAATCCCCTCCTTATCC
TGGATCTTAGCCTTCACATTGTCAATTGTGTCCGAACTCTCAACCTCCAA
TGTGATGGTTTTCCCAGTGAGTGTCTTCACAAAAATCTGCATACCACCAC
GGAGGCGAAGAACCAAGTGAAGAGTGGATTCTTTCTGGATGTTATAGTCT
GCAAGAGTCCTTCCATCTTCAAGCTGCTTTCCAGCAAAAATGAACCTCTG
CTGATCTGGTGGGATACCCTCCTTGTCTTGAATTTTTGCTT