CN181574

Overview
NameCN181574
Unique NameCN181574
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length616
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2605 contig Csv1_Contig2605:139..754. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN181574 vs. ExPASy Swiss-Prot
Match: TRXH_CHLRE (Thioredoxin H-type OS=Chlamydomonas reinhardtii GN=TRXH PE=1 SV=3)

HSP 1 Score: 97.8265 bits (242), Expect = 4.493e-20
Identity = 50/110 (45.45%), Postives = 68/110 (61.82%), Query Frame = 3
Query:   72 GQVIGCHTVEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLP-NVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTIAKHLA 398
            G VI   +  AW+ QL K  E  + +VVDFTA+WCGPC+ IAP    L+      V+FLKVDVD + +VA    + AMPTF   K+G   D +VGA +++L+  +AKH A
Sbjct:    3 GSVIVIDSKAAWDAQLAKGKEEHKPIVVDFTATWCGPCKMIAPLFETLSNDYAGKVIFLKVDVDAVAAVAEAAGITAMPTFHVYKDGVKADDLVGASQDKLKALVAKHAA 112          
BLAST of CN181574 vs. ExPASy Swiss-Prot
Match: THIO_SHEEP (Thioredoxin OS=Ovis aries GN=TXN PE=3 SV=2)

HSP 1 Score: 97.0561 bits (240), Expect = 7.664e-20
Identity = 47/94 (50.00%), Postives = 66/94 (70.21%), Query Frame = 3
Query:  102 AWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTI 383
            A+ E L  + E  +LVVVDF+A+WCGPC+ I PF   L++K  NV+FL+VDVD+ + VA +  V+ MPTF F K+G+ V +  GA KE+L+ TI
Sbjct:   10 AFQEALNSAGE--KLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVVFLEVDVDDCQDVAAECEVKCMPTFQFFKKGQKVSEFSGANKEKLEATI 101          
BLAST of CN181574 vs. ExPASy Swiss-Prot
Match: THIO_RAT (Thioredoxin OS=Rattus norvegicus GN=Txn PE=1 SV=2)

HSP 1 Score: 97.0561 bits (240), Expect = 7.664e-20
Identity = 48/97 (49.48%), Postives = 66/97 (68.04%), Query Frame = 3
Query:   99 EAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTIAK 389
            EA+ E L  + +  +LVVVDF+A+WCGPC+ I PF   L  K  NV+FL+VDVD+ + VA D  V+ MPTF F K+G+ V +  GA KE+L+ TI +
Sbjct:    9 EAFQEALAAAGD--KLVVVDFSATWCGPCKMIKPFFHSLCDKYSNVVFLEVDVDDCQDVAADCEVKCMPTFQFYKKGQKVGEFSGANKEKLEATITE 103          
BLAST of CN181574 vs. ExPASy Swiss-Prot
Match: THIO_PIG (Thioredoxin OS=Sus scrofa GN=TXN PE=1 SV=3)

HSP 1 Score: 97.0561 bits (240), Expect = 7.664e-20
Identity = 47/94 (50.00%), Postives = 67/94 (71.28%), Query Frame = 3
Query:  102 AWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTI 383
            A+ E L  + E  +LVVVDF+A+WCGPC+ I PF   L++K  NV+FL+VDVD+ + VA++  V+ MPTF F K+G+ V +  GA KE+L+ TI
Sbjct:   10 AFQEALNSAGE--KLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVVFLEVDVDDCQDVASECEVKCMPTFQFFKKGQKVGEFSGANKEKLEATI 101          
BLAST of CN181574 vs. ExPASy Swiss-Prot
Match: THIO_BOVIN (Thioredoxin OS=Bos taurus GN=TXN PE=3 SV=3)

HSP 1 Score: 96.6709 bits (239), Expect = 1.001e-19
Identity = 47/94 (50.00%), Postives = 66/94 (70.21%), Query Frame = 3
Query:  102 AWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTI 383
            A+ E L  + E  +LVVVDF+A+WCGPC+ I PF   L++K  NV+FL+VDVD+ + VA +  V+ MPTF F K+G+ V +  GA KE+L+ TI
Sbjct:   10 AFQEALNSAGE--KLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVVFLEVDVDDCQDVAAECEVKCMPTFQFFKKGQKVGEFSGANKEKLEATI 101          
BLAST of CN181574 vs. ExPASy Swiss-Prot
Match: THIO_MOUSE (Thioredoxin OS=Mus musculus GN=Txn PE=1 SV=3)

HSP 1 Score: 96.2857 bits (238), Expect = 1.307e-19
Identity = 47/98 (47.96%), Postives = 67/98 (68.37%), Query Frame = 3
Query:   99 EAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTIAKH 392
            EA+ E L  + +  +LVVVDF+A+WCGPC+ I PF   L  K  NV+FL+VDVD+ + VA D  V+ MPTF F K+G+ V +  GA KE+L+ +I ++
Sbjct:    9 EAFQEALAAAGD--KLVVVDFSATWCGPCKMIKPFFHSLCDKYSNVVFLEVDVDDCQDVAADCEVKCMPTFQFYKKGQKVGEFSGANKEKLEASITEY 104          
BLAST of CN181574 vs. ExPASy Swiss-Prot
Match: THIO_CALJA (Thioredoxin OS=Callithrix jacchus GN=TXN PE=3 SV=3)

HSP 1 Score: 96.2857 bits (238), Expect = 1.307e-19
Identity = 46/95 (48.42%), Postives = 68/95 (71.58%), Query Frame = 3
Query:   99 EAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTI 383
            +A+ E L  + +  +LVVVDF+A+WCGPC+ I PF   L++K  NV+FL+VDVD+ + VA++  V+ MPTF F K+G+ V +  GA KE+L+ TI
Sbjct:    9 DAFQEALDAAGD--KLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVVFLEVDVDDCQDVASECEVKCMPTFQFFKKGQKVGEFSGANKEKLEATI 101          
BLAST of CN181574 vs. ExPASy Swiss-Prot
Match: THIO_HUMAN (Thioredoxin OS=Homo sapiens GN=TXN PE=1 SV=3)

HSP 1 Score: 95.9005 bits (237), Expect = 1.707e-19
Identity = 46/94 (48.94%), Postives = 67/94 (71.28%), Query Frame = 3
Query:  102 AWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTI 383
            A+ E L  + +  +LVVVDF+A+WCGPC+ I PF   L++K  NV+FL+VDVD+ + VA++  V+ MPTF F K+G+ V +  GA KE+L+ TI
Sbjct:   10 AFQEALDAAGD--KLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDDCQDVASECEVKCMPTFQFFKKGQKVGEFSGANKEKLEATI 101          
BLAST of CN181574 vs. ExPASy Swiss-Prot
Match: THIO_MACMU (Thioredoxin OS=Macaca mulatta GN=TXN PE=3 SV=2)

HSP 1 Score: 95.5153 bits (236), Expect = 2.230e-19
Identity = 46/94 (48.94%), Postives = 67/94 (71.28%), Query Frame = 3
Query:  102 AWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTI 383
            A+ E L  + +  +LVVVDF+A+WCGPC+ I PF   L++K  NV+FL+VDVD+ + VA++  V+ MPTF F K+G+ V +  GA KE+L+ TI
Sbjct:   10 AFQEALDDAGD--KLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVVFLEVDVDDCQDVASECEVKCMPTFQFFKKGQKVGEFSGANKEKLEATI 101          
BLAST of CN181574 vs. ExPASy Swiss-Prot
Match: THIO_RABIT (Thioredoxin OS=Oryctolagus cuniculus GN=TXN PE=1 SV=2)

HSP 1 Score: 95.1301 bits (235), Expect = 2.912e-19
Identity = 45/94 (47.87%), Postives = 66/94 (70.21%), Query Frame = 3
Query:  102 AWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTI 383
            A+ E L  + +  +LVVVDF+A+WCGPC+ I PF   L++K  NV+F++VDVD+ K +A +  V+ MPTF F K+G+ V +  GA KE+L+ TI
Sbjct:   10 AFQEVLDSAGD--KLVVVDFSATWCGPCKMIKPFFHALSEKFNNVVFIEVDVDDCKDIAAECEVKCMPTFQFFKKGQKVGEFSGANKEKLEATI 101          
The following BLAST results are available for this feature:
BLAST of CN181574 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 112
Match NameE-valueIdentityDescription
TRXH_CHLRE4.493e-2045.45Thioredoxin H-type OS=Chlamydomonas reinhardtii GN... [more]
THIO_SHEEP7.664e-2050.00Thioredoxin OS=Ovis aries GN=TXN PE=3 SV=2[more]
THIO_RAT7.664e-2049.48Thioredoxin OS=Rattus norvegicus GN=Txn PE=1 SV=2[more]
THIO_PIG7.664e-2050.00Thioredoxin OS=Sus scrofa GN=TXN PE=1 SV=3[more]
THIO_BOVIN1.001e-1950.00Thioredoxin OS=Bos taurus GN=TXN PE=3 SV=3[more]
THIO_MOUSE1.307e-1947.96Thioredoxin OS=Mus musculus GN=Txn PE=1 SV=3[more]
THIO_CALJA1.307e-1948.42Thioredoxin OS=Callithrix jacchus GN=TXN PE=3 SV=3[more]
THIO_HUMAN1.707e-1948.94Thioredoxin OS=Homo sapiens GN=TXN PE=1 SV=3[more]
THIO_MACMU2.230e-1948.94Thioredoxin OS=Macaca mulatta GN=TXN PE=3 SV=2[more]
THIO_RABIT2.912e-1947.87Thioredoxin OS=Oryctolagus cuniculus GN=TXN PE=1 S... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001C11_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001C11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181574 ID=CN181574; Name=CN181574; organism=Citrus sinensis; type=EST; length=616bp
GAAAGAAGTATCGTTGGGTGGAGTAGTGGTGGTAATAACCGCGGAAAGCA
GAAATGGCAGCAGCAGAAGAGGGACAAGTCATCGGGTGCCACACCGTTGA
GGCCTGGAACGAGCAGCTCCAGAAGAGCAATGAAACCAAACAGCTGGTTG
TTGTTGATTTCACTGCTTCATGGTGCGGACCATGCCGTTTCATTGCTCCT
TTCTTGGCAGAGCTGGCCAAGAAACTGCCTAATGTCCTGTTTCTGAAGGT
TGATGTGGATGAACTGAAGAGTGTTGCCACTGACTGGGCAGTGGAGGCCA
TGCCAACTTTCATGTTCCTGAAAGAGGGGAAGATTGTGGACAAGGTGGTT
GGAGCAAAGAAAGAGGAACTGCAGCAGACTATTGCCAAGCATCTGGCAAC
TGCTTCTGCCTAATAAGTTATAACTATCCTCCTGCCTTTTGGCTTTAGAG
GCTATAGACCTCAATATATGCTATCAGTCTGTAATTTACTTATTAGAGTG
GTTATGGGATTGTGTTTGTTTGTGTGTTTGAATATTCCGTAATTTACTGT
TCTATGAAGCTCATACTGTGGTCTTTACAATAATTTAATTTCATATTTGT
TGTTGAACCTAAAAAA
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