CN188623

Overview
NameCN188623
Unique NameCN188623
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length702
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188623 vs. ExPASy Swiss-Prot
Match: RLA0_DANRE (60S acidic ribosomal protein P0 OS=Danio rerio GN=rplp0 PE=2 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 1.102e-42
Identity = 93/186 (50.00%), Postives = 118/186 (63.44%), Query Frame = -1
Query:  154 QTSFFQVLNIPPKINKGTVEIITPVELIRKGDKVGSSEAALLAKLG---IRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASGVSMVTALALAISPPTLAVAPHMFINAYKNVVAVALATEYSFPQADKVKEYLADPSKFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXESDGDMGFSLFD 702
            +TSFFQ L I  KI++GT+EI++ V+LI+ GDKVG+SEA LL  L    I PFSYGL++Q VY+NGSVYSPEVLD++ED L ++F  GV  + ++ L I  PTLA  PH  IN YK V+AV + T+Y+FP A+KVK YLADP+ F                             ESD DMGF LFD
Sbjct:  134 KTSFFQALGITTKISRGTIEILSDVQLIKPGDKVGASEATLLNMLNMLNISPFSYGLIIQQVYDNGSVYSPEVLDITEDALHKRFLKGVRNIASVCLQIGYPTLASIPHTIINGYKRVLAVTVETDYTFPLAEKVKAYLADPTAFAVAAPVAAATEQKSAAPAAKEEAPKEDSEESDEDMGFGLFD 319          
BLAST of CN188623 vs. ExPASy Swiss-Prot
Match: RLA0_CHERU (60S acidic ribosomal protein P0 OS=Chenopodium rubrum PE=2 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 1.102e-42
Identity = 88/106 (83.02%), Postives = 100/106 (94.34%), Query Frame = -1
Query:  385 QTSFFQVLNIPPKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASGVSMVTALALAISPPTLAVAPH 702
            QTSFFQVLNIP KINKGTVEIIT VELI+KG+KVGSSEAALLAKLGIRPFSYGL V+SVY++GSV+SPEVLDL+EDDL+ +FA+GVSMVT+L+LAIS PTLA APH
Sbjct:  137 QTSFFQVLNIPTKINKGTVEIITAVELIKKGEKVGSSEAALLAKLGIRPFSYGLNVESVYDDGSVFSPEVLDLTEDDLLARFATGVSMVTSLSLAISYPTLAAAPH 242          
BLAST of CN188623 vs. ExPASy Swiss-Prot
Match: RLA0_HUMAN (60S acidic ribosomal protein P0 OS=Homo sapiens GN=RPLP0 PE=1 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 1.031e-40
Identity = 88/184 (47.83%), Postives = 118/184 (64.13%), Query Frame = -1
Query:  154 QTSFFQVLNIPPKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASGVSMVTALALAISPPTLAVAPHMFINAYKNVVAVALATEYSFPQADKVKEYLADPSKF-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXESDGDMGFSLFD 702
            +TSFFQ L I  KI++GT+EI++ V+LI+ GDKVG+SEA LL  L I PFS+GLV+Q V++NGS+Y+PEVLD++E+ L  +F  GV  V ++ L I  PT+A  PH  IN YK V+A+++ T+Y+FP A+KVK +LADPS F                              ESD DMGF LFD
Sbjct:  134 KTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNISPFSFGLVIQQVFDNGSIYNPEVLDITEETLHSRFLEGVRNVASVCLQIGYPTVASVPHSIINGYKRVLALSVETDYTFPLAEKVKAFLADPSAFVAAAPVAAATTAAPAAAAAPAKVEAKEESEESDEDMGFGLFD 317          
BLAST of CN188623 vs. ExPASy Swiss-Prot
Match: RLA0_BOVIN (60S acidic ribosomal protein P0 OS=Bos taurus GN=RPLP0 PE=2 SV=3)

HSP 1 Score: 166.392 bits (420), Expect = 1.347e-40
Identity = 88/185 (47.57%), Postives = 118/185 (63.78%), Query Frame = -1
Query:  154 QTSFFQVLNIPPKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASGVSMVTALALAISPPTLAVAPHMFINAYKNVVAVALATEYSFPQADKVKEYLADPSKF--XXXXXXXXXXXXXXXXXXXXXXXXXXXXXESDGDMGFSLFD 702
            +TSFFQ L I  KI++GT+EI++ V+LI+ GDKVG+SEA LL  L I PFS+GLV+Q V++NGS+Y+PEVLD++E+ L  +F  GV  V ++ L I  PT+A  PH  IN YK V+A+++ T+Y+FP A+KVK +LADPS F                               ESD DMGF LFD
Sbjct:  134 KTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNISPFSFGLVIQQVFDNGSIYNPEVLDITEETLHSRFLEGVRNVASVCLQIGYPTVASVPHSIINGYKRVLALSVETDYTFPLAEKVKAFLADPSAFVAAAPVAAAPAAAPAATTAAPAKVEAKEESEESDEDMGFGLFD 318          
BLAST of CN188623 vs. ExPASy Swiss-Prot
Match: RLA0_RAT (60S acidic ribosomal protein P0 OS=Rattus norvegicus GN=Rplp0 PE=1 SV=2)

HSP 1 Score: 166.007 bits (419), Expect = 1.759e-40
Identity = 88/184 (47.83%), Postives = 117/184 (63.59%), Query Frame = -1
Query:  154 QTSFFQVLNIPPKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASGVSMVTALALAISPPTLAVAPHMFINAYKNVVAVALATEYSFPQADKVKEYLADPSKF-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXESDGDMGFSLFD 702
            +TSFFQ L I  KI++GT+EI++ V+LI+ GDKVG+SEA LL  L I PFS+GL++Q V++NGS+YSPEVLD++E  L  +F  GV  V ++ L I  PT+A  PH  IN YK V+A+++ T+Y+FP A+KVK +LADPS F                              ESD DMGF LFD
Sbjct:  134 KTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNISPFSFGLIIQQVFDNGSIYSPEVLDITEQALHTRFLEGVRNVASVCLQIGYPTVASVPHSIINGYKRVLALSVETDYTFPLAEKVKAFLADPSAFAAAAPVAAATTAAPAAAAAPAKVEAKEESEESDEDMGFGLFD 317          
BLAST of CN188623 vs. ExPASy Swiss-Prot
Match: RLA0_PIG (60S acidic ribosomal protein P0 OS=Sus scrofa GN=RPLP0 PE=2 SV=2)

HSP 1 Score: 166.007 bits (419), Expect = 1.759e-40
Identity = 87/185 (47.03%), Postives = 118/185 (63.78%), Query Frame = -1
Query:  154 QTSFFQVLNIPPKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASGVSMVTALALAISPPTLAVAPHMFINAYKNVVAVALATEYSFPQADKVKEYLADPSKF--XXXXXXXXXXXXXXXXXXXXXXXXXXXXXESDGDMGFSLFD 702
            +TSFFQ L I  KI++GT+EI++ V+LI+ GDKVG+SEA LL  L I PFS+GL++Q V++NGS+Y+PEVLD++E+ L  +F  GV  V ++ L I  PT+A  PH  IN YK V+A+++ T+Y+FP A+KVK +LADPS F                               ESD DMGF LFD
Sbjct:  134 KTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNISPFSFGLIIQQVFDNGSIYNPEVLDITEETLHSRFLEGVRNVASVCLQIGYPTVASVPHSIINGYKRVLALSVETDYTFPLAEKVKAFLADPSAFVAAAPVAAATTAAPAAAAAAPAKVEAKEESEESDEDMGFGLFD 318          
BLAST of CN188623 vs. ExPASy Swiss-Prot
Match: RLA0_DROME (60S acidic ribosomal protein P0 OS=Drosophila melanogaster GN=RpLP0 PE=1 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 3.001e-40
Identity = 85/184 (46.20%), Postives = 114/184 (61.96%), Query Frame = -1
Query:  154 QTSFFQVLNIPPKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASGVSMVTALALAISPPTLAVAPHMFINAYKNVVAVALATEYSFPQADKVKEYLADPSKF-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXESDGDMGFSLFD 702
            +TSFFQ L+IP KI+KGT+EII  V +++ GDKVG+SEA LL  L I PFSYGL+V  VY++GS++SPE+LD+  +DL  KF  GV+ + A+ L++  PT+A APH   N +KN++A+A  TE  F +A  +KEY+ DPSKF                              E D DMGF LFD
Sbjct:  134 KTSFFQALSIPTKISKGTIEIINDVPILKPGDKVGASEATLLNMLNISPFSYGLIVNQVYDSGSIFSPEILDIKPEDLRAKFQQGVANLAAVCLSVGYPTIASAPHSIANGFKNLLAIAATTEVEFKEATTIKEYIKDPSKFAAAASASAAPAAGGATEKKEEAKKPESESEEEDDDMGFGLFD 317          
BLAST of CN188623 vs. ExPASy Swiss-Prot
Match: RLA0_MOUSE (60S acidic ribosomal protein P0 OS=Mus musculus GN=Rplp0 PE=1 SV=3)

HSP 1 Score: 164.851 bits (416), Expect = 3.920e-40
Identity = 87/184 (47.28%), Postives = 116/184 (63.04%), Query Frame = -1
Query:  154 QTSFFQVLNIPPKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASGVSMVTALALAISPPTLAVAPHMFINAYKNVVAVALATEYSFPQADKVKEYLADPSKF-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXESDGDMGFSLFD 702
            +TSFFQ L I  KI++GT+EI++ V+LI+ GDKVG+SEA LL  L I PFS+GL++Q V++NGS+Y+PEVLD++E  L  +F  GV  V ++ L I  PT+A  PH  IN YK V+A+++ TEY+FP  +KVK +LADPS F                              ESD DMGF LFD
Sbjct:  134 KTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNISPFSFGLIIQQVFDNGSIYNPEVLDITEQALHSRFLEGVRNVASVCLQIGYPTVASVPHSIINGYKRVLALSVETEYTFPLTEKVKAFLADPSAFAAAAPAAAATTAAPAAAAAPAKAEAKEESEESDEDMGFGLFD 317          
BLAST of CN188623 vs. ExPASy Swiss-Prot
Match: RLA0_CERCA (60S acidic ribosomal protein P0 OS=Ceratitis capitata GN=RpLP0 PE=3 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 1.140e-39
Identity = 85/184 (46.20%), Postives = 115/184 (62.50%), Query Frame = -1
Query:  154 QTSFFQVLNIPPKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASGVSMVTALALAISPPTLAVAPHMFINAYKNVVAVALATEYSFPQADKVKEYLADPSKF-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXESDGDMGFSLFD 702
            +TSFFQ L+IP KI+KGT+EII  V +++ GDKVG+SEA LL  L I PFSYGL +  VY++GS++SPE+LD+  +DL  KF +GV+ + A++L I  PT+A APH   N +KN++A+A +TE  F QA  +KE++ DPSKF                              E D DMGF LFD
Sbjct:  134 KTSFFQALSIPTKISKGTIEIINDVPILKPGDKVGASEATLLNMLNISPFSYGLAITQVYDSGSIFSPEILDIKPEDLRAKFQAGVANLAAVSLQIGYPTIASAPHSIANGFKNLLAIAASTEVEFKQAATIKEFIKDPSKFVAAAAASAPAAGAGAAAEKKEEAKKEESESEEDDDMGFGLFD 317          
BLAST of CN188623 vs. ExPASy Swiss-Prot
Match: RLA0L_HUMAN (60S acidic ribosomal protein P0-like OS=Homo sapiens PE=1 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 4.334e-39
Identity = 86/184 (46.74%), Postives = 115/184 (62.50%), Query Frame = -1
Query:  154 QTSFFQVLNIPPKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASGVSMVTALALAISPPTLAVAPHMFINAYKNVVAVALATEYSFPQADKVKEYLADPSKF-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXESDGDMGFSLFD 702
            +TSFFQ L I  KI++GT+EI++ V+LI+ GDKVG+SEA LL  L I PFS+GLV+Q V++NGS+Y+PEVLD +E+ L  +F  GV  V ++ L    PT+A  PH  IN YK V+A+++ T+Y+FP A+ VK +LADPS F                              ESD DMGF LFD
Sbjct:  134 KTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNISPFSFGLVIQQVFDNGSIYNPEVLDKTEETLHSRFLEGVRNVASVCLQTGYPTVASVPHSIINGYKRVLALSVETDYTFPLAENVKAFLADPSAFVAAAPVAADTTAAPAAAAAPAKVEAKEESEESDEDMGFGLFD 317          
The following BLAST results are available for this feature:
BLAST of CN188623 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 35
Match NameE-valueIdentityDescription
RLA0_DANRE1.102e-4250.0060S acidic ribosomal protein P0 OS=Danio rerio GN=... [more]
RLA0_CHERU1.102e-4283.0260S acidic ribosomal protein P0 OS=Chenopodium rub... [more]
RLA0_HUMAN1.031e-4047.8360S acidic ribosomal protein P0 OS=Homo sapiens GN... [more]
RLA0_BOVIN1.347e-4047.5760S acidic ribosomal protein P0 OS=Bos taurus GN=R... [more]
RLA0_RAT1.759e-4047.8360S acidic ribosomal protein P0 OS=Rattus norvegic... [more]
RLA0_PIG1.759e-4047.0360S acidic ribosomal protein P0 OS=Sus scrofa GN=R... [more]
RLA0_DROME3.001e-4046.2060S acidic ribosomal protein P0 OS=Drosophila mela... [more]
RLA0_MOUSE3.920e-4047.2860S acidic ribosomal protein P0 OS=Mus musculus GN... [more]
RLA0_CERCA1.140e-3946.2060S acidic ribosomal protein P0 OS=Ceratitis capit... [more]
RLA0L_HUMAN4.334e-3946.7460S acidic ribosomal protein P0-like OS=Homo sapie... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006G23_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006G23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188623 ID=CN188623; Name=CN188623; organism=Citrus sinensis; type=EST; length=702bp
TTTTTTTTTTTTTATTGTCCTAAATAAAGGATTATATAAAACCCTTTGGA
AACTGAGTCTACAAAAAGCATTAAGAAAATAAACCTTACAAAACCAAAAA
CATAACCATAAACGTCAAAATCCTAAGTTATAGCACAAATGACAGTGCAC
TTAGTCGAACAAGCTGAAGCCCATATCTCCATCAGACTCCTCAGGGGGGG
CGTCCTTCTTCTCTTCCTCCTTTGCAGCAGCAGCTGGGGCATCACCACCG
CCAGCAACCGGGGCAGCAGCAACAGCAAACTTGCTTGGGTCCGCCAGGTA
CTCCTTCACTTTGTCAGCCTGAGGGAATGAATACTCAGTTGCAAGAGCAA
CAGCAACCACATTCTTGTATGCATTGATGAACATGTGTGGAGCAACTGCC
AGGGTTGGGGGGGAGATGGCAAGTGCCAAAGCGGTGACCATTGATACACC
TGAGGCGAACTTCTCCACTAGGTCATCTTCAGACAGGTCAAGGACCTCTG
GGCTGTAGACAGAACCGTTTTCATAGACAGACTGGACAACAAGACCATAA
GAGAAGGGTCTAATCCCAAGCTTTGCAAGCAGGGCTGCCTCAGAAGATCC
CACCTTGTCACCCTTCCTGATAAGCTCCACAGGTGTGATAATTTCAACAG
TACCCTTGTTAATCTTGGGGGGAATGTTAAGCACCTGGAAGAAGGAGGTC
TG
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