CN188623

Overview
NameCN188623
Unique NameCN188623
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length702
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188623 vs. ExPASy Swiss-Prot
Match: RLA0_CAEEL (60S acidic ribosomal protein P0 OS=Caenorhabditis elegans GN=rpa-0 PE=1 SV=3)

HSP 1 Score: 160.999 bits (406), Expect = 5.660e-39
Identity = 84/183 (45.90%), Postives = 119/183 (65.03%), Query Frame = -1
Query:  154 QTSFFQVLNIPPKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASGVSMVTALALAISPPTLAVAPHMFINAYKNVVAVALATEYSFPQADKVKEYLADPSKFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXESDGDMGFSLFD 702
            +TSFFQ L IP KI +GT+EI+  V LI++GDKVG+SE+ALL  LG+ PFSYGLVV+ VY++G++Y+PEVLD++ ++L ++F SGV  V +++LA++ PTLA   H   N  +N++ VA  T+ SF +A+ +K ++ADPSKF                             ESD DMGF LFD
Sbjct:  134 KTSFFQALQIPTKIARGTIEILNDVHLIKEGDKVGASESALLNMLGVTPFSYGLVVRQVYDDGTLYTPEVLDMTTEELRKRFLSGVRNVASVSLAVNYPTLASVAHSLANGLQNMLGVAAVTDVSFKEAETIKAFIADPSKF----AAAAPAAAAAPAAAAPAAKKEEPKEESDDDMGFGLFD 312          
BLAST of CN188623 vs. ExPASy Swiss-Prot
Match: RLA0_SCHPO (60S acidic ribosomal protein P0 OS=Schizosaccharomyces pombe GN=rpp0 PE=2 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 4.056e-37
Identity = 83/183 (45.36%), Postives = 112/183 (61.20%), Query Frame = -1
Query:  154 QTSFFQVLNIPPKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASGVSMVTALALAISPPTLAVAPHMFINAYKNVVAVALATEYSFPQADKVKEYLADPSKFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXESDGDMGFSLFD 702
            +TSFFQ L IP KI +GT+EI + V L+ K  KVG SEA LL  L I PF+YG+ V ++Y+ G+V+SPE+LD+SE+DL+    S  S++TA++L  + PT+    H  +NAYKN+VAV+LATEY+F   ++ K +LADPS F                             ESD DMGF LFD
Sbjct:  132 KTSFFQALGIPTKITRGTIEITSDVHLVSKDAKVGPSEATLLNMLNISPFTYGMDVLTIYDQGNVFSPEILDVSEEDLIGHLLSAASIITAISLGANYPTILSVMHSVVNAYKNLVAVSLATEYTFEGTEQTKAFLADPSAF--VVAAAPAAAAGGEAEAPAAEAAAEEEEESDEDMGFGLFD 312          
BLAST of CN188623 vs. ExPASy Swiss-Prot
Match: RLA0_EIMTE (60S acidic ribosomal protein P0 OS=Eimeria tenella PE=2 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 7.160e-34
Identity = 76/182 (41.76%), Postives = 109/182 (59.89%), Query Frame = -1
Query:  154 TSFFQVLNIPPKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASGVSMVTALALAISPPTLAVAPHMFINAYKNVVAVALATEYSFPQADKVKEYLADPSKFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXESDGDMGFSLFD 699
            T FFQ L I  KI KG +EI   V+LIR+G++V +S A LL KL ++PF+YGL V+ VY+NGSVYS  VLD++++ ++E FA+G + V A++ A+  P+ A APH  + A++N  A+ L T + FPQ  ++KE + +P+ F                             E DGDMGFSLFD
Sbjct:  134 TGFFQALGISTKIVKGQIEIQQAVQLIRRGERVSASAATLLHKLSVKPFTYGLKVEHVYDNGSVYSASVLDITDEQILEAFAAGAANVAAVSRAVGLPSAAAAPHSILEAFRNCAALCLDTPFCFPQMQRLKEMVENPAAF-AAAAAPAAAAPAAAPAAAAKAPEPEEEEEEDGDMGFSLFD 314          
BLAST of CN188623 vs. ExPASy Swiss-Prot
Match: RLA0_YEAST (60S acidic ribosomal protein P0 OS=Saccharomyces cerevisiae GN=RPP0 PE=1 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 2.303e-32
Identity = 72/183 (39.34%), Postives = 109/183 (59.56%), Query Frame = -1
Query:  154 QTSFFQVLNIPPKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASGVSMVTALALAISPPTLAVAPHMFINAYKNVVAVALATEYSFPQADKVKEYLADPSKFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXESDGDMGFSLFD 702
            +TSFFQ L +P KI +GT+EI++ V+++  G+KVG SEA+LL  L I PF++GL V  VY+NG V+   +LD+++++LV  F S VS + +++LAI  PTL    H  IN YK+++AVA+A  Y +P+ + + + + +P K+                             ESD DMGF LFD
Sbjct:  132 KTSFFQALGVPTKIARGTIEIVSDVKVVDAGNKVGQSEASLLNLLNISPFTFGLTVVQVYDNGQVFPSSILDITDEELVSHFVSAVSTIASISLAIGYPTLPSVGHTLINNYKDLLAVAIAASYHYPEIEDLVDRIENPEKY--AAAAPAATSAASGDAAPAEEAAAEEEEESDDDMGFGLFD 312          
BLAST of CN188623 vs. ExPASy Swiss-Prot
Match: RLA0_NEUCR (60S acidic ribosomal protein P0 OS=Neurospora crassa GN=crpp0 PE=2 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.493e-31
Identity = 62/142 (43.66%), Postives = 101/142 (71.13%), Query Frame = -1
Query:  277 QTSFFQVLNIPPKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASGVSMVTALALAISPPTLAVAPHMFINAYKNVVAVALATEYSFPQADKVKEYLADPSKF 702
            +TSFFQ L +P KI +GT+EI T ++L+  G KVG SEA LL  L I PF+YG+ +  VY+ G+ +  +VLD+SE+ L++ F++ ++ + +L+LA++ PTL    H  +NAYK V+AVA+ TE S+P+ +++K+ +A+P  +
Sbjct:  132 KTSFFQALGVPTKIARGTIEITTDLKLVEAGAKVGPSEATLLNMLNISPFTYGMGIAQVYDQGNTFPSDVLDISEEQLLKAFSTAITTIASLSLALNFPTLPSVIHSVVNAYKKVLAVAIETEISWPEIEELKDRIANPEAY 273          
BLAST of CN188623 vs. ExPASy Swiss-Prot
Match: RLA0_PODAN (60S acidic ribosomal protein P0 OS=Podospora anserina PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.950e-31
Identity = 62/142 (43.66%), Postives = 100/142 (70.42%), Query Frame = -1
Query:  277 QTSFFQVLNIPPKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASGVSMVTALALAISPPTLAVAPHMFINAYKNVVAVALATEYSFPQADKVKEYLADPSKF 702
            +TSFFQ L +P KI +GT+EI T ++L+  G KVG SEA LL  L I PF+YG+ +  VY+ G+ +   VLD+SE+ L++ F+S ++ + A++LA++ PTL    H  +N+YK V+AVA+ TE S+P+ +++K+ +A+P  +
Sbjct:  132 KTSFFQALGVPTKIARGTIEITTDLKLVEAGAKVGPSEATLLNMLNISPFTYGMGIAQVYDQGNTFPSSVLDISEEQLLKAFSSAITTIAAVSLALNFPTLPSVIHSLVNSYKKVLAVAIETEISWPEIEELKDRIANPEAY 273          
BLAST of CN188623 vs. ExPASy Swiss-Prot
Match: RLA0_DICDI (60S acidic ribosomal protein P0 OS=Dictyostelium discoideum GN=rplp0 PE=1 SV=2)

HSP 1 Score: 129.798 bits (325), Expect = 1.397e-29
Identity = 63/137 (45.99%), Postives = 92/137 (67.15%), Query Frame = -1
Query:  292 QTSFFQVLNIPPKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASGVSMVTALALAISPPTLAVAPHMFINAYKNVVAVALATEYSFPQADKVKEYLA 702
            QTSF Q L I  KIN+G ++I+  V +I+ G KVG+SEA LL KL I+PF+YGL  + +Y+ G+ YSP +   SE+DL+ KF  G+  + A++L I  PT+A  PH  +NA+KN++A++  T Y+F  A+K K   A
Sbjct:  133 QTSFLQDLKIATKINRGQIDIVNEVHIIKTGQKVGASEATLLQKLNIKPFTYGLEPKIIYDAGACYSPSI---SEEDLINKFKQGIFNIAAISLEIGYPTVASIPHSVMNAFKNLLAISFETSYTFDAAEKFKSAAA 266          
BLAST of CN188623 vs. ExPASy Swiss-Prot
Match: RLA0_PLAF8 (60S acidic ribosomal protein P0 OS=Plasmodium falciparum (isolate 7G8) GN=RPLP0 PE=2 SV=2)

HSP 1 Score: 124.79 bits (312), Expect = 4.495e-28
Identity = 69/182 (37.91%), Postives = 106/182 (58.24%), Query Frame = -1
Query:  154 TSFFQVLNIPPKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASGVSMVTALALAISPPTLAVAPHMFINAYKNVVAVALATEYSFPQADKVKEYLADPSKFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXESDGDMGFSLFD 699
            TSF + L I  KI KG +EI   V LI++G+KV +S A LL K  + P SYG+ V++VY++G +Y  +VLD++++D++EKF+ GVS V AL+ A    T A  PH+F+ A+KN+VA+ + ++Y+FP    +K+++ +P  F                             E DG MGF +FD
Sbjct:  136 TSFLESLGISTKIVKGQIEIQEHVHLIKQGEKVTASSATLLRKFNMNP-SYGVDVRTVYDDGVIYDAKVLDITDEDILEKFSKGVSNVAALSRATGVITEASYPHVFVEAFKNIVALIIDSDYTFPLMKILKKWVENPEAFAAVAAPASAAKADEPKKEEAKKVEEEEEEEEDGFMGFGMFD 316          
BLAST of CN188623 vs. ExPASy Swiss-Prot
Match: RLA0_TRYCR (60S acidic ribosomal protein P0 OS=Trypanosoma cruzi PE=2 SV=2)

HSP 1 Score: 113.235 bits (282), Expect = 1.353e-24
Identity = 61/130 (46.92%), Postives = 87/130 (66.92%), Query Frame = -1
Query:  313 TSFFQVLNIPPKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKF-ASGVSMVTALALAISPPTLAVAPHMFINAYKNVVAVALATEYSFPQAD 699
            TSFFQ LNI  KI KGTVEI++  +++  GD+V +S A LL KL I PF Y + VQSV++ G ++  E L ++ DD+VEK+   G+S V AL+L    PT A  PHM ++A+K ++  ++ATEY F + D
Sbjct:  142 TSFFQALNIATKIAKGTVEIVSDKKVLSVGDRVDNSTATLLQKLDISPFYYQVEVQSVWDRGMLFLREDLSIT-DDVVEKYLLEGISNVAALSLGAGIPTAATLPHMIMDAFKTLLGASVATEYEFDEFD 270          
BLAST of CN188623 vs. ExPASy Swiss-Prot
Match: RLA0_LEIIN (60S acidic ribosomal protein P0 OS=Leishmania infantum GN=LIPO-A PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.654e-22
Identity = 57/128 (44.53%), Postives = 83/128 (64.84%), Query Frame = -1
Query:  319 QTSFFQVLNIPPKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASGVSMVTALALAISPPTLAVAPHMFINAYKNVVAVALATEYSFPQ 702
            QTSFFQ LNI  KI KG VEI+T  +++  GDKV +S A LL KL I PF Y + V SV++ G +++ E L ++ED + +    G+S V A+AL    PT +    M ++A+KN++AV++AT Y F +
Sbjct:  141 QTSFFQALNIATKIAKGMVEIVTEKKVLSVGDKVDNSTATLLQKLNISPFYYQVNVLSVWDRGVLFTREDLMMTEDMVEKMLMEGLSNVAAMALGAGIPTSSTIGPMLVDAFKNLLAVSVATSYEFEE 268          
The following BLAST results are available for this feature:
BLAST of CN188623 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 35
Match NameE-valueIdentityDescription
RLA0_CAEEL5.660e-3945.9060S acidic ribosomal protein P0 OS=Caenorhabditis ... [more]
RLA0_SCHPO4.056e-3745.3660S acidic ribosomal protein P0 OS=Schizosaccharom... [more]
RLA0_EIMTE7.160e-3441.7660S acidic ribosomal protein P0 OS=Eimeria tenella... [more]
RLA0_YEAST2.303e-3239.3460S acidic ribosomal protein P0 OS=Saccharomyces c... [more]
RLA0_NEUCR1.493e-3143.6660S acidic ribosomal protein P0 OS=Neurospora cras... [more]
RLA0_PODAN1.950e-3143.6660S acidic ribosomal protein P0 OS=Podospora anser... [more]
RLA0_DICDI1.397e-2945.9960S acidic ribosomal protein P0 OS=Dictyostelium d... [more]
RLA0_PLAF84.495e-2837.9160S acidic ribosomal protein P0 OS=Plasmodium falc... [more]
RLA0_TRYCR1.353e-2446.9260S acidic ribosomal protein P0 OS=Trypanosoma cru... [more]
RLA0_LEIIN1.654e-2244.5360S acidic ribosomal protein P0 OS=Leishmania infa... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006G23_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006G23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188623 ID=CN188623; Name=CN188623; organism=Citrus sinensis; type=EST; length=702bp
TTTTTTTTTTTTTATTGTCCTAAATAAAGGATTATATAAAACCCTTTGGA
AACTGAGTCTACAAAAAGCATTAAGAAAATAAACCTTACAAAACCAAAAA
CATAACCATAAACGTCAAAATCCTAAGTTATAGCACAAATGACAGTGCAC
TTAGTCGAACAAGCTGAAGCCCATATCTCCATCAGACTCCTCAGGGGGGG
CGTCCTTCTTCTCTTCCTCCTTTGCAGCAGCAGCTGGGGCATCACCACCG
CCAGCAACCGGGGCAGCAGCAACAGCAAACTTGCTTGGGTCCGCCAGGTA
CTCCTTCACTTTGTCAGCCTGAGGGAATGAATACTCAGTTGCAAGAGCAA
CAGCAACCACATTCTTGTATGCATTGATGAACATGTGTGGAGCAACTGCC
AGGGTTGGGGGGGAGATGGCAAGTGCCAAAGCGGTGACCATTGATACACC
TGAGGCGAACTTCTCCACTAGGTCATCTTCAGACAGGTCAAGGACCTCTG
GGCTGTAGACAGAACCGTTTTCATAGACAGACTGGACAACAAGACCATAA
GAGAAGGGTCTAATCCCAAGCTTTGCAAGCAGGGCTGCCTCAGAAGATCC
CACCTTGTCACCCTTCCTGATAAGCTCCACAGGTGTGATAATTTCAACAG
TACCCTTGTTAATCTTGGGGGGAATGTTAAGCACCTGGAAGAAGGAGGTC
TG
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