CN188623

Overview
NameCN188623
Unique NameCN188623
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length702
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188623 vs. ExPASy Swiss-Prot
Match: RLA0_LEICH (60S acidic ribosomal protein P0 OS=Leishmania chagasi GN=LCP0 PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.654e-22
Identity = 57/128 (44.53%), Postives = 83/128 (64.84%), Query Frame = -1
Query:  319 QTSFFQVLNIPPKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASGVSMVTALALAISPPTLAVAPHMFINAYKNVVAVALATEYSFPQ 702
            QTSFFQ LNI  KI KG VEI+T  +++  GDKV +S A LL KL I PF Y + V SV++ G +++ E L ++ED + +    G+S V A+AL    PT +    M ++A+KN++AV++AT Y F +
Sbjct:  140 QTSFFQALNIATKIAKGMVEIVTEKKVLSVGDKVDNSTATLLQKLNISPFYYQVNVLSVWDRGVLFTREDLMMTEDMVEKMLMEGLSNVAAMALGAGIPTSSTIGPMLVDAFKNLLAVSVATSYEFEE 267          
BLAST of CN188623 vs. ExPASy Swiss-Prot
Match: RLA0_ENCCU (60S acidic ribosomal protein P0 OS=Encephalitozoon cuniculi GN=RPP0 PE=1 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.072e-21
Identity = 49/132 (37.12%), Postives = 80/132 (60.61%), Query Frame = -1
Query:  307 QTSFFQVLNIPPKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASGVSMVTALALAISPPTLAVAPHMFINAYKNVVAVALATEYSFPQADKV 702
            +TS+FQ L I  KI KG VEII+P +++ +GDKVG S+A LL  L I+PF Y + +  +YE+G +Y   ++D+ E+D+     + +S V A +L     T A  P+   NA+K+++ V+L  ++   +   V
Sbjct:  156 KTSYFQALGIATKITKGKVEIISPYKVLSEGDKVGPSQANLLGMLNIKPFCYKMTMHQIYEDGVIYDSSLIDIGEEDIFTSLRNAISTVAAASLGAGVITQASMPYNVRNAFKDILHVSLGADFMIKEQSMV 287          
BLAST of CN188623 vs. ExPASy Swiss-Prot
Match: RLA0_METJA (Acidic ribosomal protein P0 homolog OS=Methanocaldococcus jannaschii GN=rplP0 PE=3 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 1.716e-11
Identity = 42/130 (32.31%), Postives = 68/130 (52.31%), Query Frame = -1
Query:  292 LNIPPKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASGVSMVTALALAISPPTLAVAPHMFINAYKNVVAVALATEYSFPQADKVKEYLA 681
            + IP  I KG + I     +++KG+ V    AA+L +LGI+P   GL + +VYE+G +Y+P+VL + E+ L+    +       LA   + P   V P +   A+ N  A AL+ E +F   +   + LA
Sbjct:  147 VGIPAAIEKGKIAIKEDKVVVKKGEVVSPKLAAVLDRLGIKPIKVGLNILAVYEDGIIYTPDVLKVDEEKLLADIQAAYQNAFNLAFNTAYPAKEVLPFLIQKAFIN--ARALSVETAFVTKETAGDILA 274          
BLAST of CN188623 vs. ExPASy Swiss-Prot
Match: RLA0_METVO (Acidic ribosomal protein P0 homolog (Fragment) OS=Methanococcus voltae GN=rplP0 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.241e-11
Identity = 39/118 (33.05%), Postives = 62/118 (52.54%), Query Frame = -1
Query:  343 SFFQVLNIPPKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASGVSMVTALALAISPPTLAVAPHMFINAYKNVVAVAL 696
            S  + + +P  I KG + I     + ++GD V +  A +L+KL I+P   GL V  VYE+G VY PE+L + ED+ + K  S  +    L++    PT A    +   A+ N  AV++
Sbjct:  143 SELKAVGLPAAIEKGKIGIKEDTIVAKEGDVVSAKLAVVLSKLDIKPMEVGLNVLGVYEDGIVYDPEILKIDEDEFLAKLQSAYTGAFNLSVNAVIPTSATIETIVQKAFSNAKAVSI 260          
BLAST of CN188623 vs. ExPASy Swiss-Prot
Match: RLA0_PYRHO (Acidic ribosomal protein P0 homolog OS=Pyrococcus horikoshii GN=rplP0 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.521e-11
Identity = 39/119 (32.77%), Postives = 60/119 (50.42%), Query Frame = -1
Query:  331 QVLNIPPKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASGVSMVTALALAISPPTLAVAPHMFINAYKNVVAVALATEY 687
            Q L IP +I KG V I     +++ G+ +    A +L  LGI+P   GL V +VYE+G VY+P+VL + E + ++           LA+ I+ PT      +   A+ N   VA+   Y
Sbjct:  141 QALGIPARIEKGKVTIQKDTTVLKAGEVITPELANILNALGIQPLEVGLDVLAVYEDGIVYTPDVLAIDEQEYIDMLQKAYMHAFNLAVNIAYPTPETIEAIIQKAFLNAKTVAIEAGY 259          
The following BLAST results are available for this feature:
BLAST of CN188623 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 35
Match NameE-valueIdentityDescription
RLA0_LEICH1.654e-2244.5360S acidic ribosomal protein P0 OS=Leishmania chag... [more]
RLA0_ENCCU1.072e-2137.1260S acidic ribosomal protein P0 OS=Encephalitozoon... [more]
RLA0_METJA1.716e-1132.31Acidic ribosomal protein P0 homolog OS=Methanocald... [more]
RLA0_METVO2.241e-1133.05Acidic ribosomal protein P0 homolog (Fragment) OS=... [more]
RLA0_PYRHO6.521e-1132.77Acidic ribosomal protein P0 homolog OS=Pyrococcus ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006G23_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006G23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188623 ID=CN188623; Name=CN188623; organism=Citrus sinensis; type=EST; length=702bp
TTTTTTTTTTTTTATTGTCCTAAATAAAGGATTATATAAAACCCTTTGGA
AACTGAGTCTACAAAAAGCATTAAGAAAATAAACCTTACAAAACCAAAAA
CATAACCATAAACGTCAAAATCCTAAGTTATAGCACAAATGACAGTGCAC
TTAGTCGAACAAGCTGAAGCCCATATCTCCATCAGACTCCTCAGGGGGGG
CGTCCTTCTTCTCTTCCTCCTTTGCAGCAGCAGCTGGGGCATCACCACCG
CCAGCAACCGGGGCAGCAGCAACAGCAAACTTGCTTGGGTCCGCCAGGTA
CTCCTTCACTTTGTCAGCCTGAGGGAATGAATACTCAGTTGCAAGAGCAA
CAGCAACCACATTCTTGTATGCATTGATGAACATGTGTGGAGCAACTGCC
AGGGTTGGGGGGGAGATGGCAAGTGCCAAAGCGGTGACCATTGATACACC
TGAGGCGAACTTCTCCACTAGGTCATCTTCAGACAGGTCAAGGACCTCTG
GGCTGTAGACAGAACCGTTTTCATAGACAGACTGGACAACAAGACCATAA
GAGAAGGGTCTAATCCCAAGCTTTGCAAGCAGGGCTGCCTCAGAAGATCC
CACCTTGTCACCCTTCCTGATAAGCTCCACAGGTGTGATAATTTCAACAG
TACCCTTGTTAATCTTGGGGGGAATGTTAAGCACCTGGAAGAAGGAGGTC
TG
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