CN188623
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CN188623 vs. ExPASy Swiss-Prot
Match: RLA0_LEICH (60S acidic ribosomal protein P0 OS=Leishmania chagasi GN=LCP0 PE=3 SV=1) HSP 1 Score: 106.301 bits (264), Expect = 1.654e-22 Identity = 57/128 (44.53%), Postives = 83/128 (64.84%), Query Frame = -1 Query: 319 QTSFFQVLNIPPKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASGVSMVTALALAISPPTLAVAPHMFINAYKNVVAVALATEYSFPQ 702 QTSFFQ LNI KI KG VEI+T +++ GDKV +S A LL KL I PF Y + V SV++ G +++ E L ++ED + + G+S V A+AL PT + M ++A+KN++AV++AT Y F + Sbjct: 140 QTSFFQALNIATKIAKGMVEIVTEKKVLSVGDKVDNSTATLLQKLNISPFYYQVNVLSVWDRGVLFTREDLMMTEDMVEKMLMEGLSNVAAMALGAGIPTSSTIGPMLVDAFKNLLAVSVATSYEFEE 267
BLAST of CN188623 vs. ExPASy Swiss-Prot
Match: RLA0_ENCCU (60S acidic ribosomal protein P0 OS=Encephalitozoon cuniculi GN=RPP0 PE=1 SV=1) HSP 1 Score: 103.605 bits (257), Expect = 1.072e-21 Identity = 49/132 (37.12%), Postives = 80/132 (60.61%), Query Frame = -1 Query: 307 QTSFFQVLNIPPKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASGVSMVTALALAISPPTLAVAPHMFINAYKNVVAVALATEYSFPQADKV 702 +TS+FQ L I KI KG VEII+P +++ +GDKVG S+A LL L I+PF Y + + +YE+G +Y ++D+ E+D+ + +S V A +L T A P+ NA+K+++ V+L ++ + V Sbjct: 156 KTSYFQALGIATKITKGKVEIISPYKVLSEGDKVGPSQANLLGMLNIKPFCYKMTMHQIYEDGVIYDSSLIDIGEEDIFTSLRNAISTVAAASLGAGVITQASMPYNVRNAFKDILHVSLGADFMIKEQSMV 287
BLAST of CN188623 vs. ExPASy Swiss-Prot
Match: RLA0_METJA (Acidic ribosomal protein P0 homolog OS=Methanocaldococcus jannaschii GN=rplP0 PE=3 SV=2) HSP 1 Score: 69.707 bits (169), Expect = 1.716e-11 Identity = 42/130 (32.31%), Postives = 68/130 (52.31%), Query Frame = -1 Query: 292 LNIPPKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASGVSMVTALALAISPPTLAVAPHMFINAYKNVVAVALATEYSFPQADKVKEYLA 681 + IP I KG + I +++KG+ V AA+L +LGI+P GL + +VYE+G +Y+P+VL + E+ L+ + LA + P V P + A+ N A AL+ E +F + + LA Sbjct: 147 VGIPAAIEKGKIAIKEDKVVVKKGEVVSPKLAAVLDRLGIKPIKVGLNILAVYEDGIIYTPDVLKVDEEKLLADIQAAYQNAFNLAFNTAYPAKEVLPFLIQKAFIN--ARALSVETAFVTKETAGDILA 274
BLAST of CN188623 vs. ExPASy Swiss-Prot
Match: RLA0_METVO (Acidic ribosomal protein P0 homolog (Fragment) OS=Methanococcus voltae GN=rplP0 PE=3 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 2.241e-11 Identity = 39/118 (33.05%), Postives = 62/118 (52.54%), Query Frame = -1 Query: 343 SFFQVLNIPPKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASGVSMVTALALAISPPTLAVAPHMFINAYKNVVAVAL 696 S + + +P I KG + I + ++GD V + A +L+KL I+P GL V VYE+G VY PE+L + ED+ + K S + L++ PT A + A+ N AV++ Sbjct: 143 SELKAVGLPAAIEKGKIGIKEDTIVAKEGDVVSAKLAVVLSKLDIKPMEVGLNVLGVYEDGIVYDPEILKIDEDEFLAKLQSAYTGAFNLSVNAVIPTSATIETIVQKAFSNAKAVSI 260
BLAST of CN188623 vs. ExPASy Swiss-Prot
Match: RLA0_PYRHO (Acidic ribosomal protein P0 homolog OS=Pyrococcus horikoshii GN=rplP0 PE=1 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 6.521e-11 Identity = 39/119 (32.77%), Postives = 60/119 (50.42%), Query Frame = -1 Query: 331 QVLNIPPKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASGVSMVTALALAISPPTLAVAPHMFINAYKNVVAVALATEY 687 Q L IP +I KG V I +++ G+ + A +L LGI+P GL V +VYE+G VY+P+VL + E + ++ LA+ I+ PT + A+ N VA+ Y Sbjct: 141 QALGIPARIEKGKVTIQKDTTVLKAGEVITPELANILNALGIQPLEVGLDVLAVYEDGIVYTPDVLAIDEQEYIDMLQKAYMHAFNLAVNIAYPTPETIEAIIQKAFLNAKTVAIEAGY 259 The following BLAST results are available for this feature:
BLAST of CN188623 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 35
Pages
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CN188623 ID=CN188623; Name=CN188623; organism=Citrus sinensis; type=EST; length=702bpback to top |