CN181569

Overview
NameCN181569
Unique NameCN181569
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length708
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9668 contig Csv1_Contig9668:287..996. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN181569 vs. ExPASy Swiss-Prot
Match: RL5_MACFA (60S ribosomal protein L5 OS=Macaca fascicularis GN=RPL5 PE=2 SV=3)

HSP 1 Score: 89.7373 bits (221), Expect = 1.616e-17
Identity = 41/54 (75.93%), Postives = 47/54 (87.04%), Query Frame = 3
Query:   18 MAFVKAQKSKAYFKRFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVR 179
            M FVK  K+KAYFKR+QVK++RRREGKTDY AR RL+ QDKNKYNTPKYR +VR
Sbjct:    1 MGFVKVVKNKAYFKRYQVKFRRRREGKTDYYARKRLVIQDKNKYNTPKYRMIVR 54          

HSP 2 Score: 89.7373 bits (221), Expect = 1.629e-17
Identity = 42/61 (68.85%), Postives = 50/61 (81.97%), Query Frame = 1
Query:  526 TNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMD 708
            TN+DII QI  A I GD ++ AAYAH+LP+YG++VGLTNYAAAYCTGLLLARR+L    MD
Sbjct:   56 TNRDIICQIAYARIEGDMIVCAAYAHKLPKYGVKVGLTNYAAAYCTGLLLARRLLNRFGMD 116          
BLAST of CN181569 vs. ExPASy Swiss-Prot
Match: RL5_YEAST (60S ribosomal protein L5 OS=Saccharomyces cerevisiae GN=RPL5 PE=1 SV=3)

HSP 1 Score: 89.3521 bits (220), Expect = 2.127e-17
Identity = 43/61 (70.49%), Postives = 51/61 (83.61%), Query Frame = 1
Query:  526 TNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMD 708
            TNKDII QI+S+ I GD VLAAAY+HELPRYG+  GLTN+AAAY TGLL+ARR L+ L +D
Sbjct:   56 TNKDIICQIISSTITGDVVLAAAYSHELPRYGITHGLTNWAAAYATGLLIARRTLQRLGLD 116          

HSP 2 Score: 76.6406 bits (187), Expect = 1.415e-13
Identity = 37/57 (64.91%), Postives = 41/57 (71.93%), Query Frame = 3
Query:   18 MAFVKAQKSKAYFKRFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFVS 188
            MAF K  KS AY  RFQ  ++RRREGKTDY  R RL+ Q K KYNTPKYR VVRF +
Sbjct:    1 MAFQKDAKSSAYSSRFQTPFRRRREGKTDYYQRKRLVTQHKAKYNTPKYRLVVRFTN 57          
BLAST of CN181569 vs. ExPASy Swiss-Prot
Match: RL5_DROME (60S ribosomal protein L5 OS=Drosophila melanogaster GN=RpL5 PE=1 SV=2)

HSP 1 Score: 89.3521 bits (220), Expect = 2.127e-17
Identity = 42/61 (68.85%), Postives = 50/61 (81.97%), Query Frame = 1
Query:  526 TNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMD 708
            +NKDI  QI  A I GD V+ AAY+HELP+YG++VGLTNYAAAYCTGLL+ARRVL  L +D
Sbjct:   56 SNKDITVQIAYARIEGDRVVCAAYSHELPKYGIQVGLTNYAAAYCTGLLVARRVLNKLGLD 116          

HSP 2 Score: 86.2705 bits (212), Expect = 1.786e-16
Identity = 40/54 (74.07%), Postives = 45/54 (83.33%), Query Frame = 3
Query:   18 MAFVKAQKSKAYFKRFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVR 179
            M FVK  K+K YFKR+QVK++RRREGKTDY AR RL  QDKNKYNTPKYR +VR
Sbjct:    1 MGFVKVVKNKQYFKRYQVKFRRRREGKTDYYARKRLTFQDKNKYNTPKYRLIVR 54          
BLAST of CN181569 vs. ExPASy Swiss-Prot
Match: RL5_CAEEL (60S ribosomal protein L5 OS=Caenorhabditis elegans GN=rpl-5 PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.127e-17
Identity = 42/61 (68.85%), Postives = 52/61 (85.25%), Query Frame = 1
Query:  526 TNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMD 708
            TNKD++AQ+  + I GD V+A+AY+HELPRYGL+VGLTNYAAAY TGLLLARR LK + +D
Sbjct:   56 TNKDVVAQLAYSKIEGDVVVASAYSHELPRYGLKVGLTNYAAAYATGLLLARRHLKTIGLD 116          

HSP 2 Score: 84.3445 bits (207), Expect = 6.788e-16
Identity = 40/57 (70.18%), Postives = 45/57 (78.95%), Query Frame = 3
Query:   18 MAFVKAQKSKAYFKRFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFVS 188
            M  VK  K+KAYFKR+QVK +RRREGKTDY AR RL  QDKNKYNTPKYR +VR  +
Sbjct:    1 MGLVKVIKNKAYFKRYQVKLRRRREGKTDYYARKRLTVQDKNKYNTPKYRLIVRITN 57          
BLAST of CN181569 vs. ExPASy Swiss-Prot
Match: RL5_CAEBR (60S ribosomal protein L5 OS=Caenorhabditis briggsae GN=rpl-5 PE=3 SV=2)

HSP 1 Score: 89.3521 bits (220), Expect = 2.127e-17
Identity = 43/61 (70.49%), Postives = 51/61 (83.61%), Query Frame = 1
Query:  526 TNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMD 708
            TNKDI+AQ+  + I GD V+A+AYAHELPRYGL+ GLTNYAAAY TGLLLARR LK + +D
Sbjct:   56 TNKDIVAQLAYSKIEGDVVVASAYAHELPRYGLKAGLTNYAAAYATGLLLARRHLKAIGLD 116          

HSP 2 Score: 85.5001 bits (210), Expect = 3.047e-16
Identity = 41/57 (71.93%), Postives = 45/57 (78.95%), Query Frame = 3
Query:   18 MAFVKAQKSKAYFKRFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFVS 188
            M  VK  K+KAYFKR+QVK KRRREGKTDY AR RL  QDKNKYNTPKYR +VR  +
Sbjct:    1 MGLVKVIKNKAYFKRYQVKLKRRREGKTDYYARKRLTVQDKNKYNTPKYRLIVRLTN 57          
BLAST of CN181569 vs. ExPASy Swiss-Prot
Match: RL5_DUNSA (60S ribosomal protein L5 OS=Dunaliella salina GN=RPL5 PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.756e-17
Identity = 40/59 (67.80%), Postives = 48/59 (81.36%), Query Frame = 3
Query:   18 MAFVKAQKSKAYFKRFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFVSFN 194
            M +VK  K+  YF R+QVKY+RRR+GKTDYRAR+RL+ QDKNKYNT KYR VVRF + N
Sbjct:    1 MGYVKVVKTSPYFSRYQVKYRRRRQGKTDYRARLRLVRQDKNKYNTHKYRLVVRFSNKN 59          

HSP 2 Score: 79.7221 bits (195), Expect = 1.686e-14
Identity = 37/60 (61.67%), Postives = 48/60 (80.00%), Query Frame = 1
Query:  526 TNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEM 705
            +NK++  QIV + I GD V+AAAY+ ELP YGL+VGLTNY+AAYC GLL+ARR+L  L +
Sbjct:   56 SNKNVTCQIVYSTIQGDVVMAAAYSKELPNYGLKVGLTNYSAAYCVGLLVARRILTKLNL 115          
BLAST of CN181569 vs. ExPASy Swiss-Prot
Match: RL5_BOMMO (60S ribosomal protein L5 OS=Bombyx mori GN=RpL5 PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.756e-17
Identity = 41/54 (75.93%), Postives = 46/54 (85.19%), Query Frame = 3
Query:   18 MAFVKAQKSKAYFKRFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVR 179
            M FVK  K+K YFKR+QVK+KRRREGKTDY AR RL+ QDKNKYNTPKYR +VR
Sbjct:    1 MGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVR 54          

HSP 2 Score: 83.9593 bits (206), Expect = 8.938e-16
Identity = 38/61 (62.30%), Postives = 50/61 (81.97%), Query Frame = 1
Query:  526 TNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMD 708
            +NKD+  Q+  + I GD ++ AAY+HELPRYG++VGLTNYAAAY TGLLLARR+L+ L +D
Sbjct:   56 SNKDVTCQVAYSRIEGDHIVCAAYSHELPRYGVKVGLTNYAAAYSTGLLLARRLLQRLGLD 116          
BLAST of CN181569 vs. ExPASy Swiss-Prot
Match: RL5_ANOGA (60S ribosomal protein L5 OS=Anopheles gambiae GN=RpL5 PE=2 SV=3)

HSP 1 Score: 88.9669 bits (219), Expect = 2.779e-17
Identity = 40/61 (65.57%), Postives = 51/61 (83.61%), Query Frame = 1
Query:  526 TNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMD 708
            +N+DI  QI  A I GD ++ AAY+HELPRYG++VGLTNYAAAYCTGLL+ARR+L+ L +D
Sbjct:   56 SNRDITCQIAYARIEGDRIVCAAYSHELPRYGVKVGLTNYAAAYCTGLLVARRILQKLRLD 116          

HSP 2 Score: 85.5001 bits (210), Expect = 3.047e-16
Identity = 39/54 (72.22%), Postives = 46/54 (85.19%), Query Frame = 3
Query:   18 MAFVKAQKSKAYFKRFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVR 179
            M FVK  K+K YFKR+QV+++RRREGKTDY AR RLI QDKNKYNTPK+R +VR
Sbjct:    1 MGFVKVVKNKQYFKRYQVRFRRRREGKTDYYARKRLIFQDKNKYNTPKFRLIVR 54          
BLAST of CN181569 vs. ExPASy Swiss-Prot
Match: RL5_AEDAE (60S ribosomal protein L5 OS=Aedes aegypti GN=RpL5 PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.779e-17
Identity = 40/61 (65.57%), Postives = 51/61 (83.61%), Query Frame = 1
Query:  526 TNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMD 708
            +N+DI  QI  A I GD ++ AAY+HELPRYG++VGLTNYAAAYCTGLL+ARR+L+ L +D
Sbjct:   56 SNRDITCQIAYARIEGDRIVCAAYSHELPRYGVKVGLTNYAAAYCTGLLVARRILQKLRLD 116          

HSP 2 Score: 87.0409 bits (214), Expect = 1.047e-16
Identity = 40/54 (74.07%), Postives = 46/54 (85.19%), Query Frame = 3
Query:   18 MAFVKAQKSKAYFKRFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVR 179
            M FVK  K+K YFKR+QV+++RRREGKTDY AR RLI QDKNKYNTPKYR +VR
Sbjct:    1 MGFVKVVKNKQYFKRYQVRFRRRREGKTDYYARKRLIFQDKNKYNTPKYRLIVR 54          
BLAST of CN181569 vs. ExPASy Swiss-Prot
Match: RL5_NEUCR (60S ribosomal protein L5 OS=Neurospora crassa GN=rpl-5 PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.056e-16
Identity = 43/61 (70.49%), Postives = 50/61 (81.97%), Query Frame = 1
Query:  526 TNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMD 708
            TN+DII QIVS+ I GD V A+AY+HEL  YG+E GLTN+AAAY TGLLLARRVLK L +D
Sbjct:   56 TNRDIILQIVSSEITGDKVFASAYSHELKAYGIEHGLTNWAAAYATGLLLARRVLKKLGLD 116          

HSP 2 Score: 85.1149 bits (209), Expect = 3.980e-16
Identity = 41/57 (71.93%), Postives = 44/57 (77.19%), Query Frame = 3
Query:   18 MAFVKAQKSKAYFKRFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFVS 188
            MAF K  K+ AY+ RFQ KYKRRREGKTDY AR RLI Q KNKYN PKYR VVRF +
Sbjct:    1 MAFHKLVKNSAYYSRFQTKYKRRREGKTDYYARKRLITQAKNKYNAPKYRLVVRFTN 57          
The following BLAST results are available for this feature:
BLAST of CN181569 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
RL5_MACFA1.616e-1775.9360S ribosomal protein L5 OS=Macaca fascicularis GN... [more]
RL5_YEAST2.127e-1770.4960S ribosomal protein L5 OS=Saccharomyces cerevisi... [more]
RL5_DROME2.127e-1768.8560S ribosomal protein L5 OS=Drosophila melanogaste... [more]
RL5_CAEEL2.127e-1768.8560S ribosomal protein L5 OS=Caenorhabditis elegans... [more]
RL5_CAEBR2.127e-1770.4960S ribosomal protein L5 OS=Caenorhabditis briggsa... [more]
RL5_DUNSA2.756e-1767.8060S ribosomal protein L5 OS=Dunaliella salina GN=R... [more]
RL5_BOMMO2.756e-1775.9360S ribosomal protein L5 OS=Bombyx mori GN=RpL5 PE... [more]
RL5_ANOGA2.779e-1765.5760S ribosomal protein L5 OS=Anopheles gambiae GN=R... [more]
RL5_AEDAE2.779e-1765.5760S ribosomal protein L5 OS=Aedes aegypti GN=RpL5 ... [more]
RL5_NEUCR1.056e-1670.4960S ribosomal protein L5 OS=Neurospora crassa GN=r... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001C08_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001C08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181569 ID=CN181569; Name=CN181569; organism=Citrus sinensis; type=EST; length=708bp
GAGGGAAAGTTCGAGCAATGGCCTTTGTCAAGGCTCAGAAATCCAAGGCT
TACTTCAAGCGGTTCCAGGTTAAGTACAAGAGAAGAAGAGAGGGAAAGAC
TGATTACAGAGCTAGAATTCGCTTGATTAATCAGGACAAGAATAAGTACA
ACACACCCAAATACCGATTTGTTGTCCGATTCGTATCCTTCAATTGCTTT
TTTATCACTCTGTGATCATGATAGCAGGTAGTCATAGTTTATTCTAAGTG
CCTATTGTTTAGCTTCGGTATTTCAGTGCATTTGGAATGGTCTGAAGTGC
TTTTAAATTGTAAAGAATGTTGTTATTTTTGTAGGGAAATCACTTGAAAT
GCATTTTAAATATTGCCCTTTTTTCCCATTTACCTAGAATTAGTCTGTAA
ATGCTTGCACACAGTATCAGTTATCCTATTTTGTCCAGAATGGTATCAGG
AATATGTTATTTGAGTGATGCTCTAATGAGTCAGCGTAATTTCTATTCAT
GTTCCATCCTTTACCATGGTATTAGACAAACAAGGACATCATTGCACAGA
TAGTGTCAGCCAACATTGTTGGTGATTCTGTCCTTGCTGCTGCTTATGCC
CATGAGCTTCCTCGTTATGGACTTGAAGTAGGTCTTACAAACTATGCTGC
AGCTTATTGCACTGGGCTTCTTTTGGCTCGTCGTGTCTTGAAGATGCTTG
AAATGGAT
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