CN181564

Overview
NameCN181564
Unique NameCN181564
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length566
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN181564 vs. ExPASy Swiss-Prot
Match: IF5A1_TOBAC (Eukaryotic translation initiation factor 5A-1 OS=Nicotiana tabacum GN=EIF-5A1 PE=3 SV=1)

HSP 1 Score: 239.195 bits (609), Expect = 1.067e-62
Identity = 115/133 (86.47%), Postives = 121/133 (90.98%), Query Frame = -1
Query:  168 IRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHLVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDENLLSQIKDGFESGKDLVVSVQCAMGEEQINALKDIGPK 566
            IRKNG+IVIK RPCKVVEVSTSKTGKHGHAKCH V IDIF GKKLEDIVPSSHNCDVPHV RTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD+NLL+ IKDGF  GKDLV+SV  AMGEEQI  +KD+GPK
Sbjct:   27 IRKNGHIVIKNRPCKVVEVSTSKTGKHGHAKCHFVAIDIFTGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDDNLLALIKDGFAEGKDLVLSVMSAMGEEQICGIKDVGPK 159          
BLAST of CN181564 vs. ExPASy Swiss-Prot
Match: IF5A1_NICPL (Eukaryotic translation initiation factor 5A-1 OS=Nicotiana plumbaginifolia GN=EIF-5A1 PE=2 SV=1)

HSP 1 Score: 239.195 bits (609), Expect = 1.067e-62
Identity = 115/133 (86.47%), Postives = 121/133 (90.98%), Query Frame = -1
Query:  168 IRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHLVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDENLLSQIKDGFESGKDLVVSVQCAMGEEQINALKDIGPK 566
            IRKNG+IVIK RPCKVVEVSTSKTGKHGHAKCH V IDIF GKKLEDIVPSSHNCDVPHV RTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD+NLL+ IKDGF  GKDLV+SV  AMGEEQI  +KD+GPK
Sbjct:   27 IRKNGHIVIKNRPCKVVEVSTSKTGKHGHAKCHFVAIDIFTGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDDNLLALIKDGFAEGKDLVLSVMSAMGEEQICGIKDVGPK 159          
BLAST of CN181564 vs. ExPASy Swiss-Prot
Match: IF5A_SENVE (Eukaryotic translation initiation factor 5A OS=Senecio vernalis GN=EIFSV1 PE=2 SV=1)

HSP 1 Score: 238.039 bits (606), Expect = 2.378e-62
Identity = 117/133 (87.97%), Postives = 121/133 (90.98%), Query Frame = -1
Query:  168 IRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHLVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDENLLSQIKDGFESGKDLVVSVQCAMGEEQINALKDIGPK 566
            IRK G+IVIK R CKVVEVSTSKTGKHGHAKCH V IDIFNGKKLEDIVPSSHNCDVPHV RTDYQLIDISEDGFVSLLTENGNTKDDL+LPTD+ LL+QIKDGF  GKDLVVSV  AMGEEQI ALKDIGPK
Sbjct:   27 IRKGGHIVIKNRACKVVEVSTSKTGKHGHAKCHFVAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLKLPTDDALLTQIKDGFGEGKDLVVSVMSAMGEEQICALKDIGPK 159          
BLAST of CN181564 vs. ExPASy Swiss-Prot
Match: IF5A5_SOLTU (Eukaryotic translation initiation factor 5A-5 OS=Solanum tuberosum GN=EIF5A5 PE=2 SV=1)

HSP 1 Score: 237.654 bits (605), Expect = 3.106e-62
Identity = 114/133 (85.71%), Postives = 121/133 (90.98%), Query Frame = -1
Query:  168 IRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHLVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDENLLSQIKDGFESGKDLVVSVQCAMGEEQINALKDIGPK 566
            IRK+G+IVIK RPCKVVEVSTSKTGKHGHAKCH V IDIF GKKLEDIVPSSHNCDVPHV RTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD+ LL+Q+KDGF  GKDLV+SV  AMGEEQI  +KDIGPK
Sbjct:   27 IRKSGHIVIKNRPCKVVEVSTSKTGKHGHAKCHFVAIDIFTGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDDTLLAQVKDGFAEGKDLVLSVMSAMGEEQICGIKDIGPK 159          
BLAST of CN181564 vs. ExPASy Swiss-Prot
Match: IF5A1_ARATH (Eukaryotic translation initiation factor 5A-1 OS=Arabidopsis thaliana GN=At1g13950 PE=2 SV=1)

HSP 1 Score: 237.654 bits (605), Expect = 3.106e-62
Identity = 114/133 (85.71%), Postives = 120/133 (90.23%), Query Frame = -1
Query:  168 IRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHLVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDENLLSQIKDGFESGKDLVVSVQCAMGEEQINALKDIGPK 566
            IRKNGYIVIK RPCKVVEVSTSKTGKHGHAKCH V IDIF  KKLEDIVPSSHNCDVPHV RTDYQLIDISEDG+VSLLT+NG+TKDDL+LP D+ LL QIK GF+ GKDLVVSV  AMGEEQINALKDIGPK
Sbjct:   26 IRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHFVAIDIFTSKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGYVSLLTDNGSTKDDLKLPNDDTLLQQIKSGFDDGKDLVVSVMSAMGEEQINALKDIGPK 158          
BLAST of CN181564 vs. ExPASy Swiss-Prot
Match: IF5A1_SOLLC (Eukaryotic translation initiation factor 5A-1 OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 237.269 bits (604), Expect = 4.056e-62
Identity = 114/133 (85.71%), Postives = 120/133 (90.23%), Query Frame = -1
Query:  168 IRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHLVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDENLLSQIKDGFESGKDLVVSVQCAMGEEQINALKDIGPK 566
            IRK G+IVIK RPCKVVEVSTSKTGKHGHAKCH V IDIF GKKLEDIVPSSHNCDVPHV RTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD+ LL+Q+KDGF  GKDLV+SV  AMGEEQI  +KDIGPK
Sbjct:   27 IRKGGHIVIKNRPCKVVEVSTSKTGKHGHAKCHFVAIDIFTGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDDTLLAQVKDGFAEGKDLVLSVMSAMGEEQICGIKDIGPK 159          
BLAST of CN181564 vs. ExPASy Swiss-Prot
Match: IF5A1_MEDSA (Eukaryotic translation initiation factor 5A-1 OS=Medicago sativa PE=2 SV=1)

HSP 1 Score: 232.261 bits (591), Expect = 1.305e-60
Identity = 115/134 (85.82%), Postives = 121/134 (90.30%), Query Frame = -1
Query:  168 IRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHLVGIDIFNGKKLEDI-VPSSHNCDVPHVTRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDENLLSQIKDGFESGKDLVVSVQCAMGEEQINALKDIGPK 566
            IRKNGYIVIK RPCKVVEVSTSKTGKHGHAKCH V IDIF  KKLE++ VPSSHNCDVPHV RTDYQLIDISEDGFVSLLTENGNTKDDL+LPTD++LL+QIKDGF  GKDLVVSV  AMGEEQI ALKDIG K
Sbjct:   27 IRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHFVAIDIFTSKKLEEVYVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLKLPTDDSLLTQIKDGFAEGKDLVVSVMSAMGEEQICALKDIGGK 160          
BLAST of CN181564 vs. ExPASy Swiss-Prot
Match: IF5A3_ARATH (Eukaryotic translation initiation factor 5A-3 OS=Arabidopsis thaliana GN=At1g69410 PE=2 SV=1)

HSP 1 Score: 231.106 bits (588), Expect = 2.907e-60
Identity = 110/133 (82.71%), Postives = 121/133 (90.98%), Query Frame = -1
Query:  168 IRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHLVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDENLLSQIKDGFESGKDLVVSVQCAMGEEQINALKDIGPK 566
            IRK G+IVIKGRPCKVVEVSTSKTGKHGHAKCH V IDIF  KKLEDIVPSSHNCDVPHV R DYQLIDISEDGFVSLLT+NG+TKDDL+LPTDE LL+Q+K+GFE GKD+VVSV  AMGEEQ+ ALK++GPK
Sbjct:   26 IRKGGHIVIKGRPCKVVEVSTSKTGKHGHAKCHFVAIDIFTSKKLEDIVPSSHNCDVPHVNRVDYQLIDISEDGFVSLLTDNGSTKDDLKLPTDEALLTQLKNGFEEGKDIVVSVMSAMGEEQMCALKEVGPK 158          
BLAST of CN181564 vs. ExPASy Swiss-Prot
Match: IF5A_DIACA (Eukaryotic translation initiation factor 5A OS=Dianthus caryophyllus PE=2 SV=1)

HSP 1 Score: 224.557 bits (571), Expect = 2.721e-58
Identity = 104/130 (80.00%), Postives = 120/130 (92.31%), Query Frame = -1
Query:  177 IRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHLVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDENLLSQIKDGFESGKDLVVSVQCAMGEEQINALKDI 566
            IRK+G+IVIK RPCKVVEVSTSKTGKHGHAKCH V IDIFNGKKLEDIVPSSHNCDVPHV R DYQL+DI+EDGFVSLLT++G+TKDDL+LP DE L+ Q+K+GFE+GKDL++SV CAMGEEQI A+KD+
Sbjct:   27 IRKSGHIVIKNRPCKVVEVSTSKTGKHGHAKCHFVAIDIFNGKKLEDIVPSSHNCDVPHVNRVDYQLLDITEDGFVSLLTDSGDTKDDLKLPADEALVKQMKEGFEAGKDLILSVMCAMGEEQICAVKDV 156          
BLAST of CN181564 vs. ExPASy Swiss-Prot
Match: IF5A2_ARATH (Eukaryotic translation initiation factor 5A-2 OS=Arabidopsis thaliana GN=At1g26630 PE=1 SV=1)

HSP 1 Score: 212.616 bits (540), Expect = 1.070e-54
Identity = 100/131 (76.34%), Postives = 115/131 (87.79%), Query Frame = -1
Query:  174 IRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHLVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDENLLSQIKDGFESGKDLVVSVQCAMGEEQINALKDIG 566
            IRK G+IVIK RPCKVVEVSTSKTGKHGHAKCH V IDIF  KKLEDIVPSSHNCDVPHV R DYQLIDI+EDGFVSLLT++G TKDDL+LPTD+ L +Q++ GF+ GKD+VVSV  +MGEEQI A+K++G
Sbjct:   26 IRKGGHIVIKNRPCKVVEVSTSKTGKHGHAKCHFVAIDIFTAKKLEDIVPSSHNCDVPHVNRVDYQLIDITEDGFVSLLTDSGGTKDDLKLPTDDGLTAQMRLGFDEGKDIVVSVMSSMGEEQICAVKEVG 156          
The following BLAST results are available for this feature:
BLAST of CN181564 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 62
Match NameE-valueIdentityDescription
IF5A1_TOBAC1.067e-6286.47Eukaryotic translation initiation factor 5A-1 OS=N... [more]
IF5A1_NICPL1.067e-6286.47Eukaryotic translation initiation factor 5A-1 OS=N... [more]
IF5A_SENVE2.378e-6287.97Eukaryotic translation initiation factor 5A OS=Sen... [more]
IF5A5_SOLTU3.106e-6285.71Eukaryotic translation initiation factor 5A-5 OS=S... [more]
IF5A1_ARATH3.106e-6285.71Eukaryotic translation initiation factor 5A-1 OS=A... [more]
IF5A1_SOLLC4.056e-6285.71Eukaryotic translation initiation factor 5A-1 OS=S... [more]
IF5A1_MEDSA1.305e-6085.82Eukaryotic translation initiation factor 5A-1 OS=M... [more]
IF5A3_ARATH2.907e-6082.71Eukaryotic translation initiation factor 5A-3 OS=A... [more]
IF5A_DIACA2.721e-5880.00Eukaryotic translation initiation factor 5A OS=Dia... [more]
IF5A2_ARATH1.070e-5476.34Eukaryotic translation initiation factor 5A-2 OS=A... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001C03_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001C03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181564 ID=CN181564; Name=CN181564; organism=Citrus sinensis; type=EST; length=566bp
ACAGAATAAAAATACTGTCGATAGAAAACAATTAATAATATGGTAAGAGT
CATTTTATATGAAATGATGGCATTCATCTTGAAACCGGACACCAGTAAAG
CTACACTACTATCCACCTTCCCACAGCTTTCAGCAATCTGCATTCTCGAT
CAAGCAAAAGTCTTTTACTTGGGGCCAATGTCCTTCAGGGCATTGATCTG
CTCCTCTCCCATAGCACACTGAACTGAGACAACCAGATCTTTCCCACTCT
CAAATCCATCCTTGATCTGTGAAAGCAGATTTTCATCAGTTGGAAGTCTC
AGGTCATCCTTGGTATTGCCATTCTCAGTCAGCAGGCTAACAAATCCATC
CTCAGAGATATCAATCAGCTGGTAGTCAGTGCGAGTGACATGAGGAACAT
CACAGTTGTGGGAAGAGGGAACAATATCCTCAAGCTTCTTGCCATTGAAG
ATGTCAATTCCTACCAAGTGACACTTAGCATGACCGTGCTTTCCAGTCTT
GGAAGTTGAAACCTCAACAACCTTGCAAGGACGACCTTTGATGACGATAT
AACCGTTTTTGCGGAT
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