CN181564

Overview
NameCN181564
Unique NameCN181564
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length566
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN181564 vs. ExPASy Swiss-Prot
Match: IF5A_DICDI (Eukaryotic translation initiation factor 5A OS=Dictyostelium discoideum GN=eif5a PE=1 SV=2)

HSP 1 Score: 138.272 bits (347), Expect = 2.564e-32
Identity = 66/128 (51.56%), Postives = 97/128 (75.78%), Query Frame = -1
Query:  183 IRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHLVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDENLLSQIKDGFESGKDLVVSVQCAMGEEQINALK 566
            +RKNG++VIKG PCK+V++STSKTGKHGHAK ++  IDIF GKK E+I PS+HN DVP+V+R +Y ++D+ +DG++SLL   G  K+DL LP D+ +  +I    + GK+ +VSV  A+G+E + ++K
Sbjct:   30 LRKNGFVVIKGFPCKIVDMSTSKTGKHGHAKVNITAIDIFTGKKYEEICPSTHNIDVPNVSRKEYTVMDV-QDGYLSLLDAGGEVKEDLALPEDD-IGKEITQMLKEGKEPLVSVISALGKEGVVSVK 155          
BLAST of CN181564 vs. ExPASy Swiss-Prot
Match: IF5A2_CAEEL (Eukaryotic translation initiation factor 5A-2 OS=Caenorhabditis elegans GN=iff-2 PE=2 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 4.836e-31
Identity = 72/126 (57.14%), Postives = 93/126 (73.81%), Query Frame = -1
Query:  195 IRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHLVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLL-TENGNTKDDLRLPTDENLLSQIKDGFESGK-DLVVSVQCAMGEEQI 566
            +RKN +++IKGRPCK+VE+STSKTGKHGHAK H+V IDIF  KKLEDI PS+HN DVP V R +Y L+ I +DG+ SL+  E+   KDDL+LP D  L  QI+D +E  +  ++V V  A+GEE I
Sbjct:   29 LRKNEHVMIKGRPCKIVEMSTSKTGKHGHAKVHMVAIDIFTSKKLEDICPSTHNMDVPVVKRREYLLMAI-DDGYCSLMDPESCEQKDDLKLP-DTELGQQIRDAYEKDEGSVLVQVVSAIGEEAI 152          
BLAST of CN181564 vs. ExPASy Swiss-Prot
Match: IF5A1_CAEEL (Eukaryotic translation initiation factor 5A-1 OS=Caenorhabditis elegans GN=iff-1 PE=1 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 3.466e-29
Identity = 70/130 (53.85%), Postives = 93/130 (71.54%), Query Frame = -1
Query:  183 IRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHLVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLL-TENGNTKDDLRLPTDENLLSQIKDGFESGK-DLVVSVQCAMGEEQINALK 566
            +RKN +++I+GRPCK+VE+STSKTGKHGHAK H+V IDIF  KKLEDI PS+HN DVP V R +Y L+ I EDGF SL+  E+   KDDL++P + +L + I++  E  +  ++V V  A GEE I   K
Sbjct:   29 LRKNEHVMIRGRPCKIVEMSTSKTGKHGHAKVHMVAIDIFTTKKLEDICPSTHNMDVPVVKRREYILMSI-EDGFCSLMDPESCELKDDLKMP-EGDLGNTIREALEKDEGSVLVQVVAACGEEAILGYK 156          
BLAST of CN181564 vs. ExPASy Swiss-Prot
Match: IF5A_THEPD (Translation initiation factor 5A OS=Thermofilum pendens (strain Hrk 5) GN=eIF5A PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 4.113e-14
Identity = 45/124 (36.29%), Postives = 67/124 (54.03%), Query Frame = -1
Query:  195 IRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHLVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDENLLSQIKDGFESGKDLVVSVQCAMGEEQI 566
            I+   +IVI G PCKVVEV  SKTGKHG AK  +VGI  F+G K   +VP+    +VP + +   Q++    D  V L+     +  ++ +P +E + S++ +G E      V V   MG  +I
Sbjct:   11 IKVGSFIVIDGEPCKVVEVEKSKTGKHGSAKARIVGIGFFDGGKRSIVVPTDARVEVPIIKKFTAQVVAFVGDN-VQLMNLEDYSTFEIPMPQEEEIKSKLSEGVE------VEVWEVMGRHKI 127          
BLAST of CN181564 vs. ExPASy Swiss-Prot
Match: IF5A_SULTO (Translation initiation factor 5A OS=Sulfolobus tokodaii GN=eif5a PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 4.548e-13
Identity = 38/106 (35.85%), Postives = 61/106 (57.55%), Query Frame = -1
Query:  249 IRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHLVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDENLLSQIKDGFE 566
            ++   Y+VI G PC+VVE+S +KTGKHG AK ++V I +F G+K   + P     +VP + +   Q++    D    +  EN  T  D+  PTD +++ +I+ G E
Sbjct:   11 LKVGNYVVIDGEPCRVVEISKAKTGKHGSAKANIVAIGLFTGQKRTLMAPVDQQVEVPIIEKHIGQILADKGDTITIMDMENYET-FDIEKPTDADIVDKIRPGAE 115          
BLAST of CN181564 vs. ExPASy Swiss-Prot
Match: IF5A_METS5 (Translation initiation factor 5A OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=eIF5A PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.728e-12
Identity = 44/128 (34.38%), Postives = 70/128 (54.69%), Query Frame = -1
Query:  183 IRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHLVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDENLLSQIKDGFESGKDLVVSVQCAMGEEQINALK 566
            +++  YIVI G PC+VVEV+ +KTGKHG AK +++ + IF G K   + P     +VP + +   Q+I    D    +  E   T  ++ +PT+E++ S+IK      KD  V     MG ++I  +K
Sbjct:   11 MKEGSYIVIDGEPCRVVEVTKAKTGKHGSAKANIIAVSIFTGAKKTLMAPVDSTVEVPIIEKRMGQVISNVGDKVQIMDLETYET-FEIDMPTEEDVASKIK------KDAEVEYWEVMGRKKIVRVK 131          
BLAST of CN181564 vs. ExPASy Swiss-Prot
Match: IF5A_IGNH4 (Translation initiation factor 5A OS=Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125) GN=eIF5A PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.257e-12
Identity = 37/106 (34.91%), Postives = 61/106 (57.55%), Query Frame = -1
Query:  249 IRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHLVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDENLLSQIKDGFE 566
            ++   +I+I G PCK+VE+S +KTGKHG AK H+V I + +G K   + P     +VP + +   Q++ I+ D  V L+        ++ LP +E L S+++ G E
Sbjct:   11 LKPGNFIMIDGEPCKIVEMSKAKTGKHGSAKAHVVAISLISGAKKTFVAPVDTRVEVPIIEKRVGQVLAITGDS-VQLMDMETYDTFEVPLPEEEELKSRLEPGVE 115          
BLAST of CN181564 vs. ExPASy Swiss-Prot
Match: IF5A_SULAC (Translation initiation factor 5A OS=Sulfolobus acidocaldarius GN=eif5a PE=1 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 2.948e-12
Identity = 36/106 (33.96%), Postives = 61/106 (57.55%), Query Frame = -1
Query:  249 IRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHLVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDENLLSQIKDGFE 566
            ++   Y++I G PC+VVE++ +KTGKHG AK ++V I +F G+K   + P     +VP + +   Q++    D    +  E+  T  DL  PT+  ++S+I+ G E
Sbjct:   11 LKVGSYVMIDGEPCRVVEITKAKTGKHGSAKANVVAIGLFTGQKRSLMAPVDQQVEVPIIEKHVGQILADKGDNLTIMDLESYET-FDLEKPTENEIVSKIRPGAE 115          
BLAST of CN181564 vs. ExPASy Swiss-Prot
Match: IF5A_METKA (Translation initiation factor 5A OS=Methanopyrus kandleri GN=eif5a PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 5.028e-12
Identity = 43/129 (33.33%), Postives = 66/129 (51.16%), Query Frame = -1
Query:  180 IRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHLVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDENLLSQIKDGFESGKDLVVSVQCAMGEEQINALKD 566
            ++K  YI+I   PCK+VE +TS  GKHG AK  +V + +F+GKK     P     DVP + R   Q++    D  V L+        +++ P DE L SQ++ G       +V    A G+ +I  +K+
Sbjct:   13 LKKGKYIMIDDEPCKIVEYTTSSPGKHGSAKARIVAVGLFDGKKRTLTKPVDAKVDVPVIERKTAQVVSDMGD-TVQLMDMETYETFEVQKPEDEELASQLEPG------TMVEYMEAAGKRKIVGIKE 134          
BLAST of CN181564 vs. ExPASy Swiss-Prot
Match: IF5A_STAMF (Translation initiation factor 5A OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=eIF5A PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 6.567e-12
Identity = 37/106 (34.91%), Postives = 58/106 (54.72%), Query Frame = -1
Query:  249 IRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHLVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDENLLSQIKDGFE 566
            ++   +I+I G PC++VE+S +KTGKHG AK H+V I +F G K   + P     +VP + +   Q+I    D    +  E   T  ++  P+DE L  ++K G E
Sbjct:   11 LKPGNFIIIDGEPCRIVEMSKAKTGKHGSAKAHVVAIGLFTGNKKTLVAPVDQRVEVPVIEKRVGQIIADMGDLLQVMDMETFET-FEVEKPSDEKLREKLKPGVE 115          
The following BLAST results are available for this feature:
BLAST of CN181564 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 62
Match NameE-valueIdentityDescription
IF5A_DICDI2.564e-3251.56Eukaryotic translation initiation factor 5A OS=Dic... [more]
IF5A2_CAEEL4.836e-3157.14Eukaryotic translation initiation factor 5A-2 OS=C... [more]
IF5A1_CAEEL3.466e-2953.85Eukaryotic translation initiation factor 5A-1 OS=C... [more]
IF5A_THEPD4.113e-1436.29Translation initiation factor 5A OS=Thermofilum pe... [more]
IF5A_SULTO4.548e-1335.85Translation initiation factor 5A OS=Sulfolobus tok... [more]
IF5A_METS51.728e-1234.38Translation initiation factor 5A OS=Metallosphaera... [more]
IF5A_IGNH42.257e-1234.91Translation initiation factor 5A OS=Ignicoccus hos... [more]
IF5A_SULAC2.948e-1233.96Translation initiation factor 5A OS=Sulfolobus aci... [more]
IF5A_METKA5.028e-1233.33Translation initiation factor 5A OS=Methanopyrus k... [more]
IF5A_STAMF6.567e-1234.91Translation initiation factor 5A OS=Staphylothermu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001C03_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001C03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181564 ID=CN181564; Name=CN181564; organism=Citrus sinensis; type=EST; length=566bp
ACAGAATAAAAATACTGTCGATAGAAAACAATTAATAATATGGTAAGAGT
CATTTTATATGAAATGATGGCATTCATCTTGAAACCGGACACCAGTAAAG
CTACACTACTATCCACCTTCCCACAGCTTTCAGCAATCTGCATTCTCGAT
CAAGCAAAAGTCTTTTACTTGGGGCCAATGTCCTTCAGGGCATTGATCTG
CTCCTCTCCCATAGCACACTGAACTGAGACAACCAGATCTTTCCCACTCT
CAAATCCATCCTTGATCTGTGAAAGCAGATTTTCATCAGTTGGAAGTCTC
AGGTCATCCTTGGTATTGCCATTCTCAGTCAGCAGGCTAACAAATCCATC
CTCAGAGATATCAATCAGCTGGTAGTCAGTGCGAGTGACATGAGGAACAT
CACAGTTGTGGGAAGAGGGAACAATATCCTCAAGCTTCTTGCCATTGAAG
ATGTCAATTCCTACCAAGTGACACTTAGCATGACCGTGCTTTCCAGTCTT
GGAAGTTGAAACCTCAACAACCTTGCAAGGACGACCTTTGATGACGATAT
AACCGTTTTTGCGGAT
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