CN181564

Overview
NameCN181564
Unique NameCN181564
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length566
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN181564 vs. ExPASy Swiss-Prot
Match: IF5A_HYPBU (Translation initiation factor 5A OS=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) GN=eIF5A PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.463e-11
Identity = 37/106 (34.91%), Postives = 59/106 (55.66%), Query Frame = -1
Query:  249 IRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHLVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDENLLSQIKDGFE 566
            ++   YIVI G PC++VE+S +KTGKHG AK H+V + +F+G K     P     +VP + +   Q+I    D  V ++        ++  P DE+L S+++ G E
Sbjct:   11 LKVGSYIVIDGEPCRIVEMSKAKTGKHGSAKAHVVAVCLFSGNKKTLTAPVDARVEVPIIDKRIGQVIADMGD-MVQIMDMETYETFEVEKPKDEDLKSKLQPGVE 115          
BLAST of CN181564 vs. ExPASy Swiss-Prot
Match: IF5A_SULIL (Translation initiation factor 5A OS=Sulfolobus islandicus (strain L.S.2.15 / Lassen #1) GN=eIF5A PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.911e-11
Identity = 37/106 (34.91%), Postives = 60/106 (56.60%), Query Frame = -1
Query:  249 IRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHLVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDENLLSQIKDGFE 566
            ++   Y+VI G PC+VVEV+ +KTGKHG AK ++V I +F+G K   + P     +VP + +   Q+I   +D    +  E   T  ++  PT++ L S+I+   E
Sbjct:   11 LKVGSYVVIDGEPCRVVEVTKAKTGKHGSAKANVVAIGVFSGAKKTLMAPVDQQVEVPIIEKHIGQIIADMDDKIQVMDLETYET-FEIEKPTEDELASKIRPNAE 115          
BLAST of CN181564 vs. ExPASy Swiss-Prot
Match: IF5A_CALMQ (Translation initiation factor 5A OS=Caldivirga maquilingensis (strain DSMZ 13496 / IC-167) GN=eIF5A PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.259e-11
Identity = 33/73 (45.21%), Postives = 46/73 (63.01%), Query Frame = -1
Query:  348 IRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHLVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISED 566
            I++  YI+I   PC+VVEV  SKTGKHG AK  +VGI + +G K   +VP+    +VP + +   Q+I IS D
Sbjct:   11 IKEGSYIMIDNMPCRVVEVEKSKTGKHGSAKARIVGIGVIDGVKRTIVVPTDAAVEVPVIEKFTAQVISISGD 83          
BLAST of CN181564 vs. ExPASy Swiss-Prot
Match: IF5A_KORCO (Translation initiation factor 5A OS=Korarchaeum cryptofilum (strain OPF8) GN=eIF5A PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.256e-11
Identity = 37/106 (34.91%), Postives = 57/106 (53.77%), Query Frame = -1
Query:  249 IRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHLVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDENLLSQIKDGFE 566
            +RK  Y+++   PC+V+EVS SK GKHG AK  +    IF+G +   I P+    ++P V +   Q+I++     V L+        +L LP D  L S++K G E
Sbjct:   11 LRKGSYVILDDEPCEVLEVSKSKPGKHGSAKVRVEARGIFDGARRSKIFPADALVEIPIVDKKTAQVINV-YGNVVQLMDLETYETFELPLPEDPELASRLKSGIE 115          
BLAST of CN181564 vs. ExPASy Swiss-Prot
Match: IF5A_THEAC (Translation initiation factor 5A OS=Thermoplasma acidophilum GN=eif5a PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 5.559e-11
Identity = 34/101 (33.66%), Postives = 57/101 (56.44%), Query Frame = -1
Query:  249 YIVIKGRPCKVVEVSTSKTGKHGHAKCHLVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDENLLSQIKDGFE 551
            YI+I   PCK+VE++ SK GKHG AK  +V I +F+ +K   + P  H   +P + + + Q++ + ++  V L+  +  T +   LP D  +  +IK G E
Sbjct:   16 YILIDDAPCKIVEITMSKPGKHGEAKGRIVAIGVFDNQKRSVVYPVKHKVKIPIIEKKNAQVLSV-QNNEVQLM--DSETFETFVLPLDPEIADKIKPGME 113          
BLAST of CN181564 vs. ExPASy Swiss-Prot
Match: IF5A_SULIY (Translation initiation factor 5A OS=Sulfolobus islandicus (strain Y.G.57.14 / Yellowstone #1) GN=eIF5A PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 5.559e-11
Identity = 37/106 (34.91%), Postives = 59/106 (55.66%), Query Frame = -1
Query:  249 IRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHLVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDENLLSQIKDGFE 566
            ++   Y+VI G PC+VVEV+ +KTGKHG AK ++V I +F+G K   + P     +VP + +   Q+I    D    +  E   T  ++  PT++ L S+I+   E
Sbjct:   11 LKVGSYVVIDGEPCRVVEVTKAKTGKHGSAKANVVAIGVFSGAKKTLMAPVDQQVEVPIIEKHIGQIIADMGDKIQVMDLETYET-FEIEKPTEDELASKIRPNAE 115          
BLAST of CN181564 vs. ExPASy Swiss-Prot
Match: IF5A_SULIN (Translation initiation factor 5A OS=Sulfolobus islandicus (strain Y.N.15.51 / Yellowstone #2) GN=eIF5A PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 5.559e-11
Identity = 37/106 (34.91%), Postives = 59/106 (55.66%), Query Frame = -1
Query:  249 IRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHLVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDENLLSQIKDGFE 566
            ++   Y+VI G PC+VVEV+ +KTGKHG AK ++V I +F+G K   + P     +VP + +   Q+I    D    +  E   T  ++  PT++ L S+I+   E
Sbjct:   11 LKVGSYVVIDGEPCRVVEVTKAKTGKHGSAKANVVAIGVFSGAKKTLMAPVDQQVEVPIIEKHIGQIIADMGDKIQVMDLETYET-FEIEKPTEDELASKIRPNAE 115          
BLAST of CN181564 vs. ExPASy Swiss-Prot
Match: IF5A_SULIM (Translation initiation factor 5A OS=Sulfolobus islandicus (strain M.14.25 / Kamchatka #1) GN=eIF5A PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 5.559e-11
Identity = 37/106 (34.91%), Postives = 59/106 (55.66%), Query Frame = -1
Query:  249 IRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHLVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDENLLSQIKDGFE 566
            ++   Y+VI G PC+VVEV+ +KTGKHG AK ++V I +F+G K   + P     +VP + +   Q+I    D    +  E   T  ++  PT++ L S+I+   E
Sbjct:   11 LKVGSYVVIDGEPCRVVEVTKAKTGKHGSAKANVVAIGVFSGAKKTLMAPVDQQVEVPIIEKHIGQIIADMGDKIQVMDLETYET-FEIEKPTEDELASKIRPNAE 115          
BLAST of CN181564 vs. ExPASy Swiss-Prot
Match: IF5A_SULIK (Translation initiation factor 5A OS=Sulfolobus islandicus (strain M.16.4 / Kamchatka #3) GN=eIF5A PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 5.559e-11
Identity = 37/106 (34.91%), Postives = 59/106 (55.66%), Query Frame = -1
Query:  249 IRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHLVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDENLLSQIKDGFE 566
            ++   Y+VI G PC+VVEV+ +KTGKHG AK ++V I +F+G K   + P     +VP + +   Q+I    D    +  E   T  ++  PT++ L S+I+   E
Sbjct:   11 LKVGSYVVIDGEPCRVVEVTKAKTGKHGSAKANVVAIGVFSGAKKTLMAPVDQQVEVPIIEKHIGQIIADMGDKIQVMDLETYET-FEIEKPTEDELASKIRPNAE 115          
BLAST of CN181564 vs. ExPASy Swiss-Prot
Match: IF5A_SULIA (Translation initiation factor 5A OS=Sulfolobus islandicus (strain M.16.27) GN=eIF5A PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 5.559e-11
Identity = 37/106 (34.91%), Postives = 59/106 (55.66%), Query Frame = -1
Query:  249 IRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHLVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDENLLSQIKDGFE 566
            ++   Y+VI G PC+VVEV+ +KTGKHG AK ++V I +F+G K   + P     +VP + +   Q+I    D    +  E   T  ++  PT++ L S+I+   E
Sbjct:   11 LKVGSYVVIDGEPCRVVEVTKAKTGKHGSAKANVVAIGVFSGAKKTLMAPVDQQVEVPIIEKHIGQIIADMGDKIQVMDLETYET-FEIEKPTEDELASKIRPNAE 115          
The following BLAST results are available for this feature:
BLAST of CN181564 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 62
Match NameE-valueIdentityDescription
IF5A_HYPBU1.463e-1134.91Translation initiation factor 5A OS=Hyperthermus b... [more]
IF5A_SULIL1.911e-1134.91Translation initiation factor 5A OS=Sulfolobus isl... [more]
IF5A_CALMQ3.259e-1145.21Translation initiation factor 5A OS=Caldivirga maq... [more]
IF5A_KORCO4.256e-1134.91Translation initiation factor 5A OS=Korarchaeum cr... [more]
IF5A_THEAC5.559e-1133.66Translation initiation factor 5A OS=Thermoplasma a... [more]
IF5A_SULIY5.559e-1134.91Translation initiation factor 5A OS=Sulfolobus isl... [more]
IF5A_SULIN5.559e-1134.91Translation initiation factor 5A OS=Sulfolobus isl... [more]
IF5A_SULIM5.559e-1134.91Translation initiation factor 5A OS=Sulfolobus isl... [more]
IF5A_SULIK5.559e-1134.91Translation initiation factor 5A OS=Sulfolobus isl... [more]
IF5A_SULIA5.559e-1134.91Translation initiation factor 5A OS=Sulfolobus isl... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001C03_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001C03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181564 ID=CN181564; Name=CN181564; organism=Citrus sinensis; type=EST; length=566bp
ACAGAATAAAAATACTGTCGATAGAAAACAATTAATAATATGGTAAGAGT
CATTTTATATGAAATGATGGCATTCATCTTGAAACCGGACACCAGTAAAG
CTACACTACTATCCACCTTCCCACAGCTTTCAGCAATCTGCATTCTCGAT
CAAGCAAAAGTCTTTTACTTGGGGCCAATGTCCTTCAGGGCATTGATCTG
CTCCTCTCCCATAGCACACTGAACTGAGACAACCAGATCTTTCCCACTCT
CAAATCCATCCTTGATCTGTGAAAGCAGATTTTCATCAGTTGGAAGTCTC
AGGTCATCCTTGGTATTGCCATTCTCAGTCAGCAGGCTAACAAATCCATC
CTCAGAGATATCAATCAGCTGGTAGTCAGTGCGAGTGACATGAGGAACAT
CACAGTTGTGGGAAGAGGGAACAATATCCTCAAGCTTCTTGCCATTGAAG
ATGTCAATTCCTACCAAGTGACACTTAGCATGACCGTGCTTTCCAGTCTT
GGAAGTTGAAACCTCAACAACCTTGCAAGGACGACCTTTGATGACGATAT
AACCGTTTTTGCGGAT
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