CN181562

Overview
NameCN181562
Unique NameCN181562
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length144
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CN181562 vs. ExPASy Swiss-Prot
Match: UBIQ_LUPAL (Ubiquitin OS=Lupinus albus PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 3.322e-14
Identity = 38/38 (100.00%), Postives = 38/38 (100.00%), Query Frame = -1 
Query:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP 114
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP 38
[Close]
BLAST of CN181562 vs. ExPASy Swiss-Prot
Match: UBIQ_LINUS (Ubiquitin OS=Linum usitatissimum PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 3.322e-14
Identity = 38/38 (100.00%), Postives = 38/38 (100.00%), Query Frame = -1 
Query:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP 114
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP 38
[Close]
BLAST of CN181562 vs. ExPASy Swiss-Prot
Match: UBIQ_HORVU (Ubiquitin OS=Hordeum vulgare GN=MUB1 PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 3.322e-14
Identity = 38/38 (100.00%), Postives = 38/38 (100.00%), Query Frame = -1 
Query:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP 114
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP 38
[Close]
BLAST of CN181562 vs. ExPASy Swiss-Prot
Match: UBIQ_HELAN (Ubiquitin OS=Helianthus annuus PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 3.322e-14
Identity = 38/38 (100.00%), Postives = 38/38 (100.00%), Query Frame = -1 
Query:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP 114
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP 38
[Close]
BLAST of CN181562 vs. ExPASy Swiss-Prot
Match: UBIQ_DESAN (Ubiquitin OS=Deschampsia antarctica PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 3.322e-14
Identity = 38/38 (100.00%), Postives = 38/38 (100.00%), Query Frame = -1 
Query:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP 114
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP 38
[Close]
BLAST of CN181562 vs. ExPASy Swiss-Prot
Match: UBIQ_DAUCA (Ubiquitin OS=Daucus carota PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 3.322e-14
Identity = 38/38 (100.00%), Postives = 38/38 (100.00%), Query Frame = -1 
Query:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP 114
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP 38
[Close]
BLAST of CN181562 vs. ExPASy Swiss-Prot
Match: UBIQ_COPCO (Ubiquitin OS=Coprinus congregatus PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 3.322e-14
Identity = 38/38 (100.00%), Postives = 38/38 (100.00%), Query Frame = -1 
Query:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP 114
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP 38
[Close]
BLAST of CN181562 vs. ExPASy Swiss-Prot
Match: UBIQ_BRARA (Ubiquitin OS=Brassica rapa PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 3.322e-14
Identity = 38/38 (100.00%), Postives = 38/38 (100.00%), Query Frame = -1 
Query:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP 114
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP 38
[Close]
BLAST of CN181562 vs. ExPASy Swiss-Prot
Match: UBIQ_AVESA (Ubiquitin OS=Avena sativa PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 3.322e-14
Identity = 38/38 (100.00%), Postives = 38/38 (100.00%), Query Frame = -1 
Query:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP 114
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP 38
[Close]
BLAST of CN181562 vs. ExPASy Swiss-Prot
Match: UBIQ_AVEFA (Ubiquitin OS=Avena fatua PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 3.322e-14
Identity = 38/38 (100.00%), Postives = 38/38 (100.00%), Query Frame = -1 
Query:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP 114
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP 38
The following BLAST results are available for this feature:
BLAST of CN181562 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 72
Match NameE-valueIdentityDescription
UBIQ_LUPAL3.322e-14100.00Ubiquitin OS=Lupinus albus PE=3 SV=1[more]
UBIQ_LINUS3.322e-14100.00Ubiquitin OS=Linum usitatissimum PE=3 SV=1[more]
UBIQ_HORVU3.322e-14100.00Ubiquitin OS=Hordeum vulgare GN=MUB1 PE=3 SV=1[more]
UBIQ_HELAN3.322e-14100.00Ubiquitin OS=Helianthus annuus PE=3 SV=1[more]
UBIQ_DESAN3.322e-14100.00Ubiquitin OS=Deschampsia antarctica PE=2 SV=1[more]
UBIQ_DAUCA3.322e-14100.00Ubiquitin OS=Daucus carota PE=3 SV=1[more]
UBIQ_COPCO3.322e-14100.00Ubiquitin OS=Coprinus congregatus PE=1 SV=1[more]
UBIQ_BRARA3.322e-14100.00Ubiquitin OS=Brassica rapa PE=3 SV=1[more]
UBIQ_AVESA3.322e-14100.00Ubiquitin OS=Avena sativa PE=1 SV=1[more]
UBIQ_AVEFA3.322e-14100.00Ubiquitin OS=Avena fatua PE=3 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001C02_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001C02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181562 ID=CN181562; Name=CN181562; organism=Citrus sinensis; type=EST; length=144bp
TGGTGGGATCCCTTCCTTGTCCTGGATCTTGGCTTTTACATTATCAATGG
TGTCGGAGCTTTCAACCTCAAGGGTTATTGTCTTGCCGGTGAGAGTTTTC
ACAAAGATTTGCATCTTGACAGAGAGAACAGAAGGAGGCCTTTT
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