CN181562

Overview
NameCN181562
Unique NameCN181562
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length144
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12712 contig Csv1_Contig12712:695..838. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CN181562 vs. ExPASy Swiss-Prot
Match: UBIQ_ASPOF (Ubiquitin OS=Asparagus officinalis PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 3.322e-14
Identity = 38/38 (100.00%), Postives = 38/38 (100.00%), Query Frame = -1 
Query:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP 114
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP 38
[Close]
BLAST of CN181562 vs. ExPASy Swiss-Prot
Match: UBIQ_ARATH (Ubiquitin OS=Arabidopsis thaliana GN=UBQ1 PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 3.322e-14
Identity = 38/38 (100.00%), Postives = 38/38 (100.00%), Query Frame = -1 
Query:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP 114
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP 38
[Close]
BLAST of CN181562 vs. ExPASy Swiss-Prot
Match: UBIQ_YEAST (Ubiquitin OS=Saccharomyces cerevisiae GN=UBI1 PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.401e-14
Identity = 37/38 (97.37%), Postives = 38/38 (100.00%), Query Frame = -1 
Query:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP 114
            MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPP
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPP 38
[Close]
BLAST of CN181562 vs. ExPASy Swiss-Prot
Match: UBIQ_SCHPO (Ubiquitin OS=Schizosaccharomyces pombe GN=ubi1 PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.401e-14
Identity = 37/38 (97.37%), Postives = 38/38 (100.00%), Query Frame = -1 
Query:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP 114
            MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPP
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPP 38
[Close]
BLAST of CN181562 vs. ExPASy Swiss-Prot
Match: UBIQ_KLULA (Ubiquitin OS=Kluyveromyces lactis GN=ubi3 PE=1 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 7.401e-14
Identity = 37/38 (97.37%), Postives = 38/38 (100.00%), Query Frame = -1 
Query:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP 114
            MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPP
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPP 38
[Close]
BLAST of CN181562 vs. ExPASy Swiss-Prot
Match: UBIQ_CRYNE (Ubiquitin OS=Cryptococcus neoformans GN=UBI1 PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.401e-14
Identity = 37/38 (97.37%), Postives = 38/38 (100.00%), Query Frame = -1 
Query:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP 114
            MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPP
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPP 38
[Close]
BLAST of CN181562 vs. ExPASy Swiss-Prot
Match: UBIQ_CANAL (Ubiquitin OS=Candida albicans GN=UBI1 PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.401e-14
Identity = 37/38 (97.37%), Postives = 38/38 (100.00%), Query Frame = -1 
Query:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP 114
            MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPP
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPP 38
[Close]
BLAST of CN181562 vs. ExPASy Swiss-Prot
Match: UBIQ_CHLRE (Ubiquitin OS=Chlamydomonas reinhardtii GN=UBI1 PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 9.666e-14
Identity = 37/38 (97.37%), Postives = 38/38 (100.00%), Query Frame = -1 
Query:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP 114
            MQIFVKTLTGKTITLEVESSDTI+NVKAKIQDKEGIPP
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIENVKAKIQDKEGIPP 38
[Close]
BLAST of CN181562 vs. ExPASy Swiss-Prot
Match: UBIQ_NEUCR (Ubiquitin OS=Neurospora crassa GN=ubi-1 PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.262e-13
Identity = 37/38 (97.37%), Postives = 37/38 (97.37%), Query Frame = -1 
Query:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP 114
            MQIFVKTLTGKTITLEVESSDTIDNVK KIQDKEGIPP
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKQKIQDKEGIPP 38
[Close]
BLAST of CN181562 vs. ExPASy Swiss-Prot
Match: UBL1_ORYSJ (Ubiquitin-like protein 1 OS=Oryza sativa subsp. japonica GN=UBL1 PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.153e-13
Identity = 36/38 (94.74%), Postives = 37/38 (97.37%), Query Frame = -1 
Query:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP 114
            MQIFVKTLTGKTITLEVESSDTI NVKAK+QDKEGIPP
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIQNVKAKVQDKEGIPP 38
The following BLAST results are available for this feature:
BLAST of CN181562 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 72
Match NameE-valueIdentityDescription
UBIQ_ASPOF3.322e-14100.00Ubiquitin OS=Asparagus officinalis PE=3 SV=1[more]
UBIQ_ARATH3.322e-14100.00Ubiquitin OS=Arabidopsis thaliana GN=UBQ1 PE=1 SV=... [more]
UBIQ_YEAST7.401e-1497.37Ubiquitin OS=Saccharomyces cerevisiae GN=UBI1 PE=1... [more]
UBIQ_SCHPO7.401e-1497.37Ubiquitin OS=Schizosaccharomyces pombe GN=ubi1 PE=... [more]
UBIQ_KLULA7.401e-1497.37Ubiquitin OS=Kluyveromyces lactis GN=ubi3 PE=1 SV=... [more]
UBIQ_CRYNE7.401e-1497.37Ubiquitin OS=Cryptococcus neoformans GN=UBI1 PE=1 ... [more]
UBIQ_CANAL7.401e-1497.37Ubiquitin OS=Candida albicans GN=UBI1 PE=1 SV=1[more]
UBIQ_CHLRE9.666e-1497.37Ubiquitin OS=Chlamydomonas reinhardtii GN=UBI1 PE=... [more]
UBIQ_NEUCR1.262e-1397.37Ubiquitin OS=Neurospora crassa GN=ubi-1 PE=1 SV=1[more]
UBL1_ORYSJ2.153e-1394.74Ubiquitin-like protein 1 OS=Oryza sativa subsp. ja... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001C02_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001C02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181562 ID=CN181562; Name=CN181562; organism=Citrus sinensis; type=EST; length=144bp
TGGTGGGATCCCTTCCTTGTCCTGGATCTTGGCTTTTACATTATCAATGG
TGTCGGAGCTTTCAACCTCAAGGGTTATTGTCTTGCCGGTGAGAGTTTTC
ACAAAGATTTGCATCTTGACAGAGAGAACAGAAGGAGGCCTTTT
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