CN181562

Overview
NameCN181562
Unique NameCN181562
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length144
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12712 contig Csv1_Contig12712:695..838. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CN181562 vs. ExPASy Swiss-Prot
Match: UBIQ_PONPY (Ubiquitin OS=Pongo pygmaeus GN=UBA52 PE=3 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 3.673e-13
Identity = 36/38 (94.74%), Postives = 37/38 (97.37%), Query Frame = -1 
Query:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP 114
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPP
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP 38
[Close]
BLAST of CN181562 vs. ExPASy Swiss-Prot
Match: UBIQ_PLUXY (Ubiquitin OS=Plutella xylostella PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.673e-13
Identity = 36/38 (94.74%), Postives = 37/38 (97.37%), Query Frame = -1 
Query:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP 114
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPP
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP 38
[Close]
BLAST of CN181562 vs. ExPASy Swiss-Prot
Match: UBIQ_PIG (Ubiquitin OS=Sus scrofa GN=UBA52 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.673e-13
Identity = 36/38 (94.74%), Postives = 37/38 (97.37%), Query Frame = -1 
Query:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP 114
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPP
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP 38
[Close]
BLAST of CN181562 vs. ExPASy Swiss-Prot
Match: UBIQ_PANTR (Ubiquitin OS=Pan troglodytes GN=UBB PE=1 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 3.673e-13
Identity = 36/38 (94.74%), Postives = 37/38 (97.37%), Query Frame = -1 
Query:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP 114
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPP
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP 38
[Close]
BLAST of CN181562 vs. ExPASy Swiss-Prot
Match: UBIQ_OPHHA (Ubiquitin OS=Ophiophagus hannah PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.673e-13
Identity = 36/38 (94.74%), Postives = 37/38 (97.37%), Query Frame = -1 
Query:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP 114
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPP
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP 38
[Close]
BLAST of CN181562 vs. ExPASy Swiss-Prot
Match: UBIQ_MOUSE (Ubiquitin OS=Mus musculus GN=Rps27a PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.673e-13
Identity = 36/38 (94.74%), Postives = 37/38 (97.37%), Query Frame = -1 
Query:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP 114
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPP
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP 38
[Close]
BLAST of CN181562 vs. ExPASy Swiss-Prot
Match: UBIQ_MANSE (Ubiquitin OS=Manduca sexta PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.673e-13
Identity = 36/38 (94.74%), Postives = 37/38 (97.37%), Query Frame = -1 
Query:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP 114
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPP
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP 38
[Close]
BLAST of CN181562 vs. ExPASy Swiss-Prot
Match: UBIQ_MACFA (Ubiquitin OS=Macaca fascicularis GN=UBA52 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.673e-13
Identity = 36/38 (94.74%), Postives = 37/38 (97.37%), Query Frame = -1 
Query:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP 114
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPP
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP 38
[Close]
BLAST of CN181562 vs. ExPASy Swiss-Prot
Match: UBIQ_ICTPU (Ubiquitin OS=Ictalurus punctatus GN=rps27a PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.673e-13
Identity = 36/38 (94.74%), Postives = 37/38 (97.37%), Query Frame = -1 
Query:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP 114
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPP
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP 38
[Close]
BLAST of CN181562 vs. ExPASy Swiss-Prot
Match: UBIQ_HUMAN (Ubiquitin OS=Homo sapiens GN=RPS27A PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.673e-13
Identity = 36/38 (94.74%), Postives = 37/38 (97.37%), Query Frame = -1 
Query:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP 114
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPP
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP 38
The following BLAST results are available for this feature:
BLAST of CN181562 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 72
Match NameE-valueIdentityDescription
UBIQ_PONPY3.673e-1394.74Ubiquitin OS=Pongo pygmaeus GN=UBA52 PE=3 SV=2[more]
UBIQ_PLUXY3.673e-1394.74Ubiquitin OS=Plutella xylostella PE=3 SV=1[more]
UBIQ_PIG3.673e-1394.74Ubiquitin OS=Sus scrofa GN=UBA52 PE=3 SV=1[more]
UBIQ_PANTR3.673e-1394.74Ubiquitin OS=Pan troglodytes GN=UBB PE=1 SV=2[more]
UBIQ_OPHHA3.673e-1394.74Ubiquitin OS=Ophiophagus hannah PE=3 SV=1[more]
UBIQ_MOUSE3.673e-1394.74Ubiquitin OS=Mus musculus GN=Rps27a PE=1 SV=1[more]
UBIQ_MANSE3.673e-1394.74Ubiquitin OS=Manduca sexta PE=3 SV=1[more]
UBIQ_MACFA3.673e-1394.74Ubiquitin OS=Macaca fascicularis GN=UBA52 PE=3 SV=... [more]
UBIQ_ICTPU3.673e-1394.74Ubiquitin OS=Ictalurus punctatus GN=rps27a PE=3 SV... [more]
UBIQ_HUMAN3.673e-1394.74Ubiquitin OS=Homo sapiens GN=RPS27A PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001C02_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001C02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181562 ID=CN181562; Name=CN181562; organism=Citrus sinensis; type=EST; length=144bp
TGGTGGGATCCCTTCCTTGTCCTGGATCTTGGCTTTTACATTATCAATGG
TGTCGGAGCTTTCAACCTCAAGGGTTATTGTCTTGCCGGTGAGAGTTTTC
ACAAAGATTTGCATCTTGACAGAGAGAACAGAAGGAGGCCTTTT
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