CN181562

Overview
NameCN181562
Unique NameCN181562
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length144
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CN181562 vs. ExPASy Swiss-Prot
Match: UBIQ_HORSE (Ubiquitin OS=Equus caballus GN=UBB PE=3 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 3.673e-13
Identity = 36/38 (94.74%), Postives = 37/38 (97.37%), Query Frame = -1 
Query:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP 114
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPP
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP 38
[Close]
BLAST of CN181562 vs. ExPASy Swiss-Prot
Match: UBIQ_GORGO (Ubiquitin OS=Gorilla gorilla gorilla GN=UBB PE=3 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 3.673e-13
Identity = 36/38 (94.74%), Postives = 37/38 (97.37%), Query Frame = -1 
Query:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP 114
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPP
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP 38
[Close]
BLAST of CN181562 vs. ExPASy Swiss-Prot
Match: UBIQ_FELCA (Ubiquitin OS=Felis catus GN=UBA52 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.673e-13
Identity = 36/38 (94.74%), Postives = 37/38 (97.37%), Query Frame = -1 
Query:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP 114
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPP
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP 38
[Close]
BLAST of CN181562 vs. ExPASy Swiss-Prot
Match: UBIQ_DROME (Ubiquitin OS=Drosophila melanogaster GN=RpL40 PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.673e-13
Identity = 36/38 (94.74%), Postives = 37/38 (97.37%), Query Frame = -1 
Query:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP 114
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPP
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP 38
[Close]
BLAST of CN181562 vs. ExPASy Swiss-Prot
Match: UBIQ_CRIGR (Ubiquitin OS=Cricetulus griseus PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.673e-13
Identity = 36/38 (94.74%), Postives = 37/38 (97.37%), Query Frame = -1 
Query:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP 114
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPP
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP 38
[Close]
BLAST of CN181562 vs. ExPASy Swiss-Prot
Match: UBIQ_CHICK (Ubiquitin OS=Gallus gallus GN=UBA52 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.673e-13
Identity = 36/38 (94.74%), Postives = 37/38 (97.37%), Query Frame = -1 
Query:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP 114
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPP
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP 38
[Close]
BLAST of CN181562 vs. ExPASy Swiss-Prot
Match: UBIQ_CERCA (Ubiquitin OS=Ceratitis capitata PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.673e-13
Identity = 36/38 (94.74%), Postives = 37/38 (97.37%), Query Frame = -1 
Query:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP 114
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPP
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP 38
[Close]
BLAST of CN181562 vs. ExPASy Swiss-Prot
Match: UBIQ_CAVPO (Ubiquitin OS=Cavia porcellus GN=RPS27A PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.673e-13
Identity = 36/38 (94.74%), Postives = 37/38 (97.37%), Query Frame = -1 
Query:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP 114
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPP
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP 38
[Close]
BLAST of CN181562 vs. ExPASy Swiss-Prot
Match: UBIQ_CANFA (Ubiquitin OS=Canis familiaris GN=UBA52 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.673e-13
Identity = 36/38 (94.74%), Postives = 37/38 (97.37%), Query Frame = -1 
Query:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP 114
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPP
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP 38
[Close]
BLAST of CN181562 vs. ExPASy Swiss-Prot
Match: UBIQ_CAMDR (Ubiquitin OS=Camelus dromedarius PE=3 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 3.673e-13
Identity = 36/38 (94.74%), Postives = 37/38 (97.37%), Query Frame = -1 
Query:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP 114
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPP
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP 38
The following BLAST results are available for this feature:
BLAST of CN181562 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 72
Match NameE-valueIdentityDescription
UBIQ_HORSE3.673e-1394.74Ubiquitin OS=Equus caballus GN=UBB PE=3 SV=2[more]
UBIQ_GORGO3.673e-1394.74Ubiquitin OS=Gorilla gorilla gorilla GN=UBB PE=3 S... [more]
UBIQ_FELCA3.673e-1394.74Ubiquitin OS=Felis catus GN=UBA52 PE=3 SV=1[more]
UBIQ_DROME3.673e-1394.74Ubiquitin OS=Drosophila melanogaster GN=RpL40 PE=1... [more]
UBIQ_CRIGR3.673e-1394.74Ubiquitin OS=Cricetulus griseus PE=3 SV=1[more]
UBIQ_CHICK3.673e-1394.74Ubiquitin OS=Gallus gallus GN=UBA52 PE=3 SV=1[more]
UBIQ_CERCA3.673e-1394.74Ubiquitin OS=Ceratitis capitata PE=1 SV=1[more]
UBIQ_CAVPO3.673e-1394.74Ubiquitin OS=Cavia porcellus GN=RPS27A PE=3 SV=1[more]
UBIQ_CANFA3.673e-1394.74Ubiquitin OS=Canis familiaris GN=UBA52 PE=3 SV=1[more]
UBIQ_CAMDR3.673e-1394.74Ubiquitin OS=Camelus dromedarius PE=3 SV=2[more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001C02_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001C02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181562 ID=CN181562; Name=CN181562; organism=Citrus sinensis; type=EST; length=144bp
TGGTGGGATCCCTTCCTTGTCCTGGATCTTGGCTTTTACATTATCAATGG
TGTCGGAGCTTTCAACCTCAAGGGTTATTGTCTTGCCGGTGAGAGTTTTC
ACAAAGATTTGCATCTTGACAGAGAGAACAGAAGGAGGCCTTTT
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