CN181562

Overview
NameCN181562
Unique NameCN181562
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length144
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12712 contig Csv1_Contig12712:695..838. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN181562 vs. ExPASy Swiss-Prot
Match: UBIQ_BOVIN (Ubiquitin OS=Bos taurus GN=RPS27A PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.673e-13
Identity = 36/38 (94.74%), Postives = 37/38 (97.37%), Query Frame = -1
Query:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP 114
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPP
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP 38          
BLAST of CN181562 vs. ExPASy Swiss-Prot
Match: UBIQ_ACACA (Ubiquitin OS=Acanthamoeba castellanii PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.673e-13
Identity = 36/38 (94.74%), Postives = 37/38 (97.37%), Query Frame = -1
Query:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP 114
            MQIFVKTLTGKTITLEVESSDTI+NVK KIQDKEGIPP
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIENVKQKIQDKEGIPP 38          
BLAST of CN181562 vs. ExPASy Swiss-Prot
Match: UBIQ_TETPY (Ubiquitin OS=Tetrahymena pyriformis GN=TUF11 PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.797e-13
Identity = 35/38 (92.11%), Postives = 38/38 (100.00%), Query Frame = -1
Query:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP 114
            MQIFVKTLTGKTITL+VE+SDTI+NVKAKIQDKEGIPP
Sbjct:    1 MQIFVKTLTGKTITLDVEASDTIENVKAKIQDKEGIPP 38          
BLAST of CN181562 vs. ExPASy Swiss-Prot
Match: UBIQ_EUPEU (Ubiquitin OS=Euplotes eurystomus PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.265e-13
Identity = 35/38 (92.11%), Postives = 36/38 (94.74%), Query Frame = -1
Query:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP 114
            MQIFVKTLTGKTITL+VE SDTIDNVK KIQDKEGIPP
Sbjct:    1 MQIFVKTLTGKTITLDVEQSDTIDNVKTKIQDKEGIPP 38          
BLAST of CN181562 vs. ExPASy Swiss-Prot
Match: UBIQ_TRYBB (Ubiquitin OS=Trypanosoma brucei brucei PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 8.183e-13
Identity = 35/38 (92.11%), Postives = 37/38 (97.37%), Query Frame = -1
Query:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP 114
            MQIFVKTLTGKTI LEVE+SDTI+NVKAKIQDKEGIPP
Sbjct:    1 MQIFVKTLTGKTIALEVEASDTIENVKAKIQDKEGIPP 38          
BLAST of CN181562 vs. ExPASy Swiss-Prot
Match: UBIQ_EIMBO (Ubiquitin OS=Eimeria bovis PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 8.183e-13
Identity = 35/38 (92.11%), Postives = 37/38 (97.37%), Query Frame = -1
Query:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP 114
            MQIFVKTLTGKTITL+VE SDTI+NVKAKIQDKEGIPP
Sbjct:    1 MQIFVKTLTGKTITLDVEPSDTIENVKAKIQDKEGIPP 38          
BLAST of CN181562 vs. ExPASy Swiss-Prot
Match: UBIQ_STRPU (Ubiquitin OS=Strongylocentrotus purpuratus PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.069e-12
Identity = 35/38 (92.11%), Postives = 37/38 (97.37%), Query Frame = -1
Query:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP 114
            MQIFVKTLTGKTITLEVE SD+I+NVKAKIQDKEGIPP
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDSIENVKAKIQDKEGIPP 38          
BLAST of CN181562 vs. ExPASy Swiss-Prot
Match: UBIQ_ENCCU (Ubiquitin OS=Encephalitozoon cuniculi GN=ECU02_0740i PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.069e-12
Identity = 35/38 (92.11%), Postives = 37/38 (97.37%), Query Frame = -1
Query:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP 114
            MQIFVKTLTGKTITLEVE SD+I+NVKAKIQDKEGIPP
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDSIENVKAKIQDKEGIPP 38          
BLAST of CN181562 vs. ExPASy Swiss-Prot
Match: UBIQ_DICDI (Ubiquitin OS=Dictyostelium discoideum GN=ubqA PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.069e-12
Identity = 35/38 (92.11%), Postives = 36/38 (94.74%), Query Frame = -1
Query:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP 114
            MQIFVKTLTGKTITLEVE SD I+NVKAKIQDKEGIPP
Sbjct:    1 MQIFVKTLTGKTITLEVEGSDNIENVKAKIQDKEGIPP 38          
BLAST of CN181562 vs. ExPASy Swiss-Prot
Match: UBIQ_LEIMA (Ubiquitin OS=Leishmania major GN=UB-EP52 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.396e-12
Identity = 35/38 (92.11%), Postives = 36/38 (94.74%), Query Frame = -1
Query:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP 114
            MQIFVKTLTGKTI LEVE SDTI+NVKAKIQDKEGIPP
Sbjct:    1 MQIFVKTLTGKTIALEVEPSDTIENVKAKIQDKEGIPP 38          
The following BLAST results are available for this feature:
BLAST of CN181562 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 72
Match NameE-valueIdentityDescription
UBIQ_BOVIN3.673e-1394.74Ubiquitin OS=Bos taurus GN=RPS27A PE=1 SV=1[more]
UBIQ_ACACA3.673e-1394.74Ubiquitin OS=Acanthamoeba castellanii PE=3 SV=1[more]
UBIQ_TETPY4.797e-1392.11Ubiquitin OS=Tetrahymena pyriformis GN=TUF11 PE=3 ... [more]
UBIQ_EUPEU6.265e-1392.11Ubiquitin OS=Euplotes eurystomus PE=3 SV=1[more]
UBIQ_TRYBB8.183e-1392.11Ubiquitin OS=Trypanosoma brucei brucei PE=3 SV=1[more]
UBIQ_EIMBO8.183e-1392.11Ubiquitin OS=Eimeria bovis PE=2 SV=1[more]
UBIQ_STRPU1.069e-1292.11Ubiquitin OS=Strongylocentrotus purpuratus PE=3 SV... [more]
UBIQ_ENCCU1.069e-1292.11Ubiquitin OS=Encephalitozoon cuniculi GN=ECU02_074... [more]
UBIQ_DICDI1.069e-1292.11Ubiquitin OS=Dictyostelium discoideum GN=ubqA PE=1... [more]
UBIQ_LEIMA1.396e-1292.11Ubiquitin OS=Leishmania major GN=UB-EP52 PE=3 SV=1[more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS04_0001C02_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001C02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181562 ID=CN181562; Name=CN181562; organism=Citrus sinensis; type=EST; length=144bp
TGGTGGGATCCCTTCCTTGTCCTGGATCTTGGCTTTTACATTATCAATGG
TGTCGGAGCTTTCAACCTCAAGGGTTATTGTCTTGCCGGTGAGAGTTTTC
ACAAAGATTTGCATCTTGACAGAGAGAACAGAAGGAGGCCTTTT
back to top