CN181562

Overview
NameCN181562
Unique NameCN181562
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length144
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12712 contig Csv1_Contig12712:695..838. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CN181562 vs. ExPASy Swiss-Prot
Match: UBIQ_PHYIN (Ubiquitin OS=Phytophthora infestans PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.109e-12
Identity = 34/38 (89.47%), Postives = 36/38 (94.74%), Query Frame = -1 
Query:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP 114
            MQIFVKTLTGKTITL+VE SD+IDNVK KIQDKEGIPP
Sbjct:    1 MQIFVKTLTGKTITLDVEPSDSIDNVKQKIQDKEGIPP 38
[Close]
BLAST of CN181562 vs. ExPASy Swiss-Prot
Match: UBIQ_LEITA (Ubiquitin OS=Leishmania tarentolae GN=UB-EP52 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.927e-12
Identity = 34/38 (89.47%), Postives = 35/38 (92.11%), Query Frame = -1 
Query:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP 114
            MQIFVKTLTG TI LEVE SDTI+NVKAKIQDKEGIPP
Sbjct:    1 MQIFVKTLTGTTIALEVEPSDTIENVKAKIQDKEGIPP 38
The following BLAST results are available for this feature:
BLAST of CN181562 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 72
Match NameE-valueIdentityDescription
UBIQ_PHYIN3.109e-1289.47Ubiquitin OS=Phytophthora infestans PE=1 SV=1[more]
UBIQ_LEITA6.927e-1289.47Ubiquitin OS=Leishmania tarentolae GN=UB-EP52 PE=3... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001C02_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001C02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181562 ID=CN181562; Name=CN181562; organism=Citrus sinensis; type=EST; length=144bp
TGGTGGGATCCCTTCCTTGTCCTGGATCTTGGCTTTTACATTATCAATGG
TGTCGGAGCTTTCAACCTCAAGGGTTATTGTCTTGCCGGTGAGAGTTTTC
ACAAAGATTTGCATCTTGACAGAGAGAACAGAAGGAGGCCTTTT
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