CN181561

Overview
NameCN181561
Unique NameCN181561
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length658
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1756 contig Csv1_Contig1756:275..932. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN181561 vs. ExPASy Swiss-Prot
Match: NUOF1_RHIME (NADH-quinone oxidoreductase subunit F 1 OS=Rhizobium meliloti GN=nuoF1 PE=3 SV=1)

HSP 1 Score: 342.813 bits (878), Expect = 9.200e-94
Identity = 156/217 (71.89%), Postives = 184/217 (84.79%), Query Frame = 2
Query:    5 GCPTTVTNVETVAVSPTILRRGPDWFAGFGRKNNSGTKLFCVSGHVNKPCTVEEEMSIPLKELIDRHCGGVRGGWDNLLAVIPGGSSVPLLPKHICDDVLMDYDALKAVQSGLGTAAVIVMDKSTDVVDAIARLSYFYKHESCGRCTPCREGTGWLWMIMERLKVGNAKLEEIDMLQEVTKQIEGHTICALGDAAAWPVQGLIRHFRPELERRIKEH 655
            GCPTTV NVE++AV+PTILRRG  W+  FGR NN GTKL+ VSGHVN+PCTVE+ MSIP  ELI++HCGG+RGGWDNLLAVIPGGSSVP +P     D +MDYD L+ + SGLGTAAVIVMDKSTD++ AI RLS FYKHESCG+CTPCREGTGW+  +MER+  G A+  EIDML +VTKQ+EGHTICALGDAAAWP+QGLI+HFRPE+E+RI E+
Sbjct:  203 GCPTTVNNVESIAVTPTILRRGAGWYTSFGRPNNHGTKLYSVSGHVNRPCTVEDAMSIPFHELIEKHCGGIRGGWDNLLAVIPGGSSVPCVPGAQMKDAIMDYDGLRELGSGLGTAAVIVMDKSTDIIKAIWRLSAFYKHESCGQCTPCREGTGWMMRVMERMVQGRAQKREIDMLFDVTKQVEGHTICALGDAAAWPIQGLIKHFRPEMEKRIDEY 419          
BLAST of CN181561 vs. ExPASy Swiss-Prot
Match: NUOF_RICBR (NADH-quinone oxidoreductase subunit F OS=Rickettsia bellii (strain RML369-C) GN=nuoF PE=3 SV=1)

HSP 1 Score: 342.043 bits (876), Expect = 1.569e-93
Identity = 154/215 (71.63%), Postives = 181/215 (84.19%), Query Frame = 2
Query:    5 GCPTTVTNVETVAVSPTILRRGPDWFAGFGRKNNSGTKLFCVSGHVNKPCTVEEEMSIPLKELIDRHCGGVRGGWDNLLAVIPGGSSVPLLPKHICDDVLMDYDALKAVQSGLGTAAVIVMDKSTDVVDAIARLSYFYKHESCGRCTPCREGTGWLWMIMERLKVGNAKLEEIDMLQEVTKQIEGHTICALGDAAAWPVQGLIRHFRPELERRIK 649
            GCPTT+ NVE++AV PTILRRG  WFA  G+ NN+GTK+FC+SGHVNKPC VEE M IPLKE+I++H GGVRGGWDNL A+IPGGSSVPLLPK +C+   MD+D+LKA  S LGT  +IVMDKSTD++ AIARLS FY HESCG+CTPCREGTGW+W +M RL  G+AK  EID L EVTK+IEGHTICALGDAAAWP+QGLI+HFR E+E RI+
Sbjct:  203 GCPTTINNVESIAVVPTILRRGASWFASIGKPNNTGTKIFCISGHVNKPCNVEEAMGIPLKEIIEKHAGGVRGGWDNLKAIIPGGSSVPLLPKSLCETADMDFDSLKAAGSSLGTGGIIVMDKSTDIIYAIARLSKFYMHESCGQCTPCREGTGWMWRVMMRLVKGDAKKSEIDQLLEVTKEIEGHTICALGDAAAWPIQGLIKHFRNEIESRIQ 417          
BLAST of CN181561 vs. ExPASy Swiss-Prot
Match: NUOF_RICB8 (NADH-quinone oxidoreductase subunit F OS=Rickettsia bellii (strain OSU 85-389) GN=nuoF PE=3 SV=1)

HSP 1 Score: 342.043 bits (876), Expect = 1.569e-93
Identity = 154/215 (71.63%), Postives = 181/215 (84.19%), Query Frame = 2
Query:    5 GCPTTVTNVETVAVSPTILRRGPDWFAGFGRKNNSGTKLFCVSGHVNKPCTVEEEMSIPLKELIDRHCGGVRGGWDNLLAVIPGGSSVPLLPKHICDDVLMDYDALKAVQSGLGTAAVIVMDKSTDVVDAIARLSYFYKHESCGRCTPCREGTGWLWMIMERLKVGNAKLEEIDMLQEVTKQIEGHTICALGDAAAWPVQGLIRHFRPELERRIK 649
            GCPTT+ NVE++AV PTILRRG  WFA  G+ NN+GTK+FC+SGHVNKPC VEE M IPLKE+I++H GGVRGGWDNL A+IPGGSSVPLLPK +C+   MD+D+LKA  S LGT  +IVMDKSTD++ AIARLS FY HESCG+CTPCREGTGW+W +M RL  G+AK  EID L EVTK+IEGHTICALGDAAAWP+QGLI+HFR E+E RI+
Sbjct:  203 GCPTTINNVESIAVVPTILRRGASWFASIGKPNNTGTKIFCISGHVNKPCNVEEAMGIPLKEIIEKHAGGVRGGWDNLKAIIPGGSSVPLLPKSLCETADMDFDSLKAAGSSLGTGGIIVMDKSTDIIYAIARLSKFYMHESCGQCTPCREGTGWMWRVMMRLVKGDAKKSEIDQLLEVTKEIEGHTICALGDAAAWPIQGLIKHFRNEIESRIQ 417          
BLAST of CN181561 vs. ExPASy Swiss-Prot
Match: NUOF_RICM5 (NADH-quinone oxidoreductase subunit F OS=Rickettsia massiliae (strain Mtu5) GN=nuoF PE=3 SV=1)

HSP 1 Score: 339.732 bits (870), Expect = 7.789e-93
Identity = 156/218 (71.56%), Postives = 183/218 (83.94%), Query Frame = 2
Query:    5 GCPTTVTNVETVAVSPTILRRGPDWFAGFGRKNNSGTKLFCVSGHVNKPCTVEEEMSIPLKELIDRHCGGVRGGWDNLLAVIPGGSSVPLLPKHICDDVLMDYDALKAVQSGLGTAAVIVMDKSTDVVDAIARLSYFYKHESCGRCTPCREGTGWLWMIMERLKVGNAKLEEIDMLQEVTKQIEGHTICALGDAAAWPVQGLIRHFRPELERRIKEHA 658
            GCPTT+ NVE++AV PTILRRG  WFAG G+ NN+GTK+FC+SGHVNKPC VEE M I LKELI+++ GGVRGGWDNL A+IPGGSSVPLLPK +C+ V MD+D+L+   SGLGT  +IVMDKSTD++ AIARLS FY HESCG+CTPCREGTGW+W +M RL  GNAK  EID L  VTK+IEGHTICALGDAAAWP+QGLIRHFR E+E RIK ++
Sbjct:  203 GCPTTINNVESIAVVPTILRRGASWFAGIGKPNNTGTKIFCISGHVNKPCNVEEAMGISLKELIEKYAGGVRGGWDNLKAIIPGGSSVPLLPKLLCE-VEMDFDSLRTAGSGLGTGGIIVMDKSTDIIYAIARLSKFYMHESCGQCTPCREGTGWMWRVMMRLVKGNAKKSEIDELLNVTKEIEGHTICALGDAAAWPIQGLIRHFRSEIEARIKSYS 419          
BLAST of CN181561 vs. ExPASy Swiss-Prot
Match: NUOF_RICPR (NADH-quinone oxidoreductase subunit F OS=Rickettsia prowazekii GN=nuoF PE=3 SV=1)

HSP 1 Score: 337.806 bits (865), Expect = 2.960e-92
Identity = 153/215 (71.16%), Postives = 183/215 (85.12%), Query Frame = 2
Query:    5 GCPTTVTNVETVAVSPTILRRGPDWFAGFGRKNNSGTKLFCVSGHVNKPCTVEEEMSIPLKELIDRHCGGVRGGWDNLLAVIPGGSSVPLLPKHICDDVLMDYDALKAVQSGLGTAAVIVMDKSTDVVDAIARLSYFYKHESCGRCTPCREGTGWLWMIMERLKVGNAKLEEIDMLQEVTKQIEGHTICALGDAAAWPVQGLIRHFRPELERRIK 649
            GCPTT+ NVE++AV PTILRRG  WFA  G+ NN+GTK+FC+SGHVNKPC +EE M +PLKELI+++ GGVRGGW+NL A+IPGG+SVPLLPK +C+ V MD+D+L+ V SGLGT  +IVMDKSTD++ AIARLS FY HESCG+CTPCREGTGW+W +M RL  GNAK  EID L  VTK+IEGHTICALGDAAAWP+QGLIRHFR E+E+RIK
Sbjct:  203 GCPTTINNVESIAVVPTILRRGASWFAAIGKPNNTGTKVFCISGHVNKPCNIEEVMGVPLKELIEKYAGGVRGGWNNLKAIIPGGASVPLLPKSLCE-VEMDFDSLRTVGSGLGTGGIIVMDKSTDIIYAIARLSKFYMHESCGQCTPCREGTGWMWRVMMRLVNGNAKKNEIDTLLNVTKEIEGHTICALGDAAAWPIQGLIRHFRDEIEQRIK 416          
BLAST of CN181561 vs. ExPASy Swiss-Prot
Match: NUOF_RICTY (NADH-quinone oxidoreductase subunit F OS=Rickettsia typhi GN=nuoF PE=3 SV=1)

HSP 1 Score: 337.421 bits (864), Expect = 3.865e-92
Identity = 153/215 (71.16%), Postives = 182/215 (84.65%), Query Frame = 2
Query:    5 GCPTTVTNVETVAVSPTILRRGPDWFAGFGRKNNSGTKLFCVSGHVNKPCTVEEEMSIPLKELIDRHCGGVRGGWDNLLAVIPGGSSVPLLPKHICDDVLMDYDALKAVQSGLGTAAVIVMDKSTDVVDAIARLSYFYKHESCGRCTPCREGTGWLWMIMERLKVGNAKLEEIDMLQEVTKQIEGHTICALGDAAAWPVQGLIRHFRPELERRIK 649
            GCPTT+ NVE++AV PTILRRG  WFA  G+ NN+GTK+FC+SGHVNKPC +EE M IPLKELI+++ GGVRGGWDNL A+IPGG+SVPLLPK +C+ V MD+D+L+ V SGLGT  +IVMD+STD++ AIARLS FY HESCG+CTPCREGTGW+W +M RL  GNAK  EI+ L  VTK+IEGHTICALGDAAAWP+QGLIRHFR E+E RIK
Sbjct:  203 GCPTTINNVESIAVVPTILRRGASWFAAIGKPNNTGTKIFCISGHVNKPCNIEEAMGIPLKELIEKYAGGVRGGWDNLKAIIPGGASVPLLPKSLCE-VEMDFDSLRTVGSGLGTGGIIVMDRSTDIIYAIARLSKFYMHESCGQCTPCREGTGWMWRVMMRLVNGNAKKTEIETLLNVTKEIEGHTICALGDAAAWPIQGLIRHFRDEIEERIK 416          
BLAST of CN181561 vs. ExPASy Swiss-Prot
Match: NUOF_RICCN (NADH-quinone oxidoreductase subunit F OS=Rickettsia conorii GN=nuoF PE=3 SV=1)

HSP 1 Score: 335.88 bits (860), Expect = 1.125e-91
Identity = 154/215 (71.63%), Postives = 180/215 (83.72%), Query Frame = 2
Query:    5 GCPTTVTNVETVAVSPTILRRGPDWFAGFGRKNNSGTKLFCVSGHVNKPCTVEEEMSIPLKELIDRHCGGVRGGWDNLLAVIPGGSSVPLLPKHICDDVLMDYDALKAVQSGLGTAAVIVMDKSTDVVDAIARLSYFYKHESCGRCTPCREGTGWLWMIMERLKVGNAKLEEIDMLQEVTKQIEGHTICALGDAAAWPVQGLIRHFRPELERRIK 649
            GCPTT+ NVE++AV PTILRRG  WFAG G+ NN+GTK+FC+SGHVNKPC VEE M I LKELI+++ GGVRGGWDNL A+IPGGSSVPLLPK +C+ V MD+D+L+   SGLGT  +IVMD+STD++ AIARLS FY HESCG+CTPCREGTGW+W +M RL  GN K  EID L  VTK+IEGHTICALGDAAAWP+QGLIRHFR E+E RIK
Sbjct:  203 GCPTTINNVESIAVVPTILRRGASWFAGIGKPNNTGTKIFCISGHVNKPCNVEEAMGISLKELIEKYAGGVRGGWDNLKAIIPGGSSVPLLPKSLCE-VDMDFDSLRTAGSGLGTGGIIVMDQSTDIIYAIARLSKFYMHESCGQCTPCREGTGWMWRVMMRLVKGNVKKSEIDELLNVTKEIEGHTICALGDAAAWPIQGLIRHFRSEIEARIK 416          
BLAST of CN181561 vs. ExPASy Swiss-Prot
Match: NUOF_RICFE (NADH-quinone oxidoreductase subunit F OS=Rickettsia felis GN=nuoF PE=3 SV=1)

HSP 1 Score: 335.495 bits (859), Expect = 1.469e-91
Identity = 154/215 (71.63%), Postives = 180/215 (83.72%), Query Frame = 2
Query:    5 GCPTTVTNVETVAVSPTILRRGPDWFAGFGRKNNSGTKLFCVSGHVNKPCTVEEEMSIPLKELIDRHCGGVRGGWDNLLAVIPGGSSVPLLPKHICDDVLMDYDALKAVQSGLGTAAVIVMDKSTDVVDAIARLSYFYKHESCGRCTPCREGTGWLWMIMERLKVGNAKLEEIDMLQEVTKQIEGHTICALGDAAAWPVQGLIRHFRPELERRIK 649
            GCPTT+ NVE++AV PTILRRG  WFA  G+ NN+GTK+FC+SGHVNKPC VEE M I LKELI+++ GGVRGGWDNL A+IPGGSSVPLLPK +C+ V MD+D+L+   SGLGT  +IVMDKSTD++ AIARLS FY HESCG+CTPCREGTGW+W +M RL  GNA+  EID L  VTK+IEGHTICALGDAAAWP+QGLIRHFR E+E RIK
Sbjct:  203 GCPTTINNVESIAVVPTILRRGASWFASIGKPNNTGTKIFCISGHVNKPCNVEEAMGISLKELIEKYAGGVRGGWDNLKAIIPGGSSVPLLPKSLCE-VDMDFDSLRTAGSGLGTGGIIVMDKSTDIIYAIARLSKFYMHESCGQCTPCREGTGWMWRVMMRLVKGNAQKSEIDELLNVTKEIEGHTICALGDAAAWPIQGLIRHFRSEIEERIK 416          
BLAST of CN181561 vs. ExPASy Swiss-Prot
Match: NUOF_RICAH (NADH-quinone oxidoreductase subunit F OS=Rickettsia akari (strain Hartford) GN=nuoF PE=3 SV=1)

HSP 1 Score: 335.495 bits (859), Expect = 1.469e-91
Identity = 155/218 (71.10%), Postives = 182/218 (83.49%), Query Frame = 2
Query:    5 GCPTTVTNVETVAVSPTILRRGPDWFAGFGRKNNSGTKLFCVSGHVNKPCTVEEEMSIPLKELIDRHCGGVRGGWDNLLAVIPGGSSVPLLPKHICDDVLMDYDALKAVQSGLGTAAVIVMDKSTDVVDAIARLSYFYKHESCGRCTPCREGTGWLWMIMERLKVGNAKLEEIDMLQEVTKQIEGHTICALGDAAAWPVQGLIRHFRPELERRIKEHA 658
            GCPTT+ NVE++AV PTILRR   WFA  G+ NN+GTK+FC+SGHVNKPC VEE M I LKELI+++ GGVRGGWDNL A+IPGGSSVPLLPK +C+ V MD+D+L+ V SGLGT  +IVMDKSTD++ AIARLS FY HESCG+CTPCREGTGW+W +M RL  GNAK  EID L  VTK+IEGHTICALGDAAAWP+QGLIRHFR E+E RIK ++
Sbjct:  203 GCPTTINNVESIAVVPTILRRRASWFASIGKPNNTGTKIFCISGHVNKPCNVEEAMGISLKELIEKYAGGVRGGWDNLKAIIPGGSSVPLLPKSLCE-VDMDFDSLRTVGSGLGTGGIIVMDKSTDIIYAIARLSKFYMHESCGQCTPCREGTGWMWRVMIRLVKGNAKKSEIDELLNVTKEIEGHTICALGDAAAWPIQGLIRHFRSEIEDRIKSYS 419          
BLAST of CN181561 vs. ExPASy Swiss-Prot
Match: NUOF_RICCK (NADH-quinone oxidoreductase subunit F OS=Rickettsia canadensis (strain McKiel) GN=nuoF PE=3 SV=1)

HSP 1 Score: 335.109 bits (858), Expect = 1.918e-91
Identity = 152/214 (71.03%), Postives = 180/214 (84.11%), Query Frame = 2
Query:    5 GCPTTVTNVETVAVSPTILRRGPDWFAGFGRKNNSGTKLFCVSGHVNKPCTVEEEMSIPLKELIDRHCGGVRGGWDNLLAVIPGGSSVPLLPKHICDDVLMDYDALKAVQSGLGTAAVIVMDKSTDVVDAIARLSYFYKHESCGRCTPCREGTGWLWMIMERLKVGNAKLEEIDMLQEVTKQIEGHTICALGDAAAWPVQGLIRHFRPELERRI 646
            GCPTT+ NVE++AV PTILRRG +WFA  G+ NN+GTK+FC+SGHVNKPC VEE M IPLKELI+++ GGV+GGW+NL A+IPGGSSVPL+PK IC+ V MD+D+L+   SGLGT  +IVM++STD+V AIARLS FY HESCG+CTPCREGTGW+W +M RL  GNAK  EID L  VTK IEGHTICALGDAAAWP+QGLIRHFR E+E RI
Sbjct:  203 GCPTTINNVESIAVVPTILRRGANWFASIGKPNNTGTKVFCISGHVNKPCNVEEVMGIPLKELIEKYAGGVQGGWNNLKAIIPGGSSVPLIPKSICETVDMDFDSLRTAGSGLGTGGIIVMNQSTDIVYAIARLSKFYMHESCGQCTPCREGTGWMWRVMMRLVKGNAKKSEIDQLLSVTKAIEGHTICALGDAAAWPIQGLIRHFRDEIEERI 416          
The following BLAST results are available for this feature:
BLAST of CN181561 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
NUOF1_RHIME9.200e-9471.89NADH-quinone oxidoreductase subunit F 1 OS=Rhizobi... [more]
NUOF_RICBR1.569e-9371.63NADH-quinone oxidoreductase subunit F OS=Rickettsi... [more]
NUOF_RICB81.569e-9371.63NADH-quinone oxidoreductase subunit F OS=Rickettsi... [more]
NUOF_RICM57.789e-9371.56NADH-quinone oxidoreductase subunit F OS=Rickettsi... [more]
NUOF_RICPR2.960e-9271.16NADH-quinone oxidoreductase subunit F OS=Rickettsi... [more]
NUOF_RICTY3.865e-9271.16NADH-quinone oxidoreductase subunit F OS=Rickettsi... [more]
NUOF_RICCN1.125e-9171.63NADH-quinone oxidoreductase subunit F OS=Rickettsi... [more]
NUOF_RICFE1.469e-9171.63NADH-quinone oxidoreductase subunit F OS=Rickettsi... [more]
NUOF_RICAH1.469e-9171.10NADH-quinone oxidoreductase subunit F OS=Rickettsi... [more]
NUOF_RICCK1.918e-9171.03NADH-quinone oxidoreductase subunit F OS=Rickettsi... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001C01_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001C01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181561 ID=CN181561; Name=CN181561; organism=Citrus sinensis; type=EST; length=658bp
GAGGGGTTGTCCCACCACTGTCACCAATGTGGAAACTGTGGCCGTTTCTC
CCACCATTTTAAGGCGTGGACCGGACTGGTTTGCCGGTTTTGGCAGGAAG
AACAATTCTGGTACAAAATTGTTTTGTGTGTCGGGCCATGTGAATAAGCC
TTGCACAGTTGAAGAGGAGATGAGTATTCCCCTCAAGGAGTTGATAGATA
GACACTGTGGTGGTGTTCGAGGTGGATGGGATAATTTACTTGCAGTAATA
CCAGGGGGTTCTTCAGTTCCTTTGCTTCCCAAACATATATGTGATGATGT
GCTGATGGATTATGATGCTCTGAAGGCTGTTCAATCAGGATTGGGAACTG
CTGCTGTGATTGTCATGGACAAATCAACTGATGTTGTCGATGCAATTGCT
AGGCTCTCATACTTCTATAAGCACGAAAGCTGTGGGCGGTGCACTCCATG
CAGGGAGGGAACAGGATGGCTTTGGATGATCATGGAAAGATTGAAGGTTG
GAAATGCAAAGTTGGAGGAGATTGATATGCTTCAGGAGGTGACCAAGCAG
ATTGAAGGGCACACAATCTGTGCACTGGGTGATGCAGCTGCTTGGCCTGT
TCAGGGTCTCATACGACATTTTAGGCCTGAGCTTGAGAGAAGGATCAAAG
AGCATGCT
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