CN181561

Overview
NameCN181561
Unique NameCN181561
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length658
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1756 contig Csv1_Contig1756:275..932. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN181561 vs. ExPASy Swiss-Prot
Match: NUOF_ECOLI (NADH-quinone oxidoreductase subunit F OS=Escherichia coli (strain K12) GN=nuoF PE=1 SV=3)

HSP 1 Score: 130.954 bits (328), Expect = 5.495e-30
Identity = 74/218 (33.94%), Postives = 116/218 (53.21%), Query Frame = 2
Query:    5 GCPTTVTNVETVAVSPTILRRGPDWFAGFGRKNNSGTKLFCVSGHVNKPCTVEEEMSIPLKELIDRHCGGVRGGWDNLLAVIPGGSSVPLLPK-HICDDVLMDYDALKAVQSGLGTAAVIVMDKSTDVVDAIARLSYFYKHESCGRCTPCREGTGWLWMIMERLKVGNAKLEEIDMLQEVTKQI-EGHTICALGDAAAWPVQGLIRHFRPELERRIKE 652
            G PT V NVET+   P IL  G +W+    +  ++GTKL   SG V  P   E       +E+++ + GG+R G     A  PGG+    L + H+  D+ M+++++    S LGTA  + +D   ++V  +  L  F+  ESCG CTPCR+G  W   I+  L+ G  +  +I+ L+++ + +  G T CA    A  P+Q  I++FR E E  IK+
Sbjct:  211 GKPTCVNNVETLCNVPAILANGVEWYQNISKSKDAGTKLMGFSGRVKNPGLWELPFGTTAREILEDYAGGMRDGL-KFKAWQPGGAGTDFLTEAHL--DLPMEFESIGKAGSRLGTALAMAVDHEINMVSLVRNLEEFFARESCGWCTPCRDGLPWSVKILRALERGEGQPGDIETLEQLCRFLGPGKTFCAHAPGAVEPLQSAIKYFREEFEAGIKQ 425          
BLAST of CN181561 vs. ExPASy Swiss-Prot
Match: NUOF_SALTY (NADH-quinone oxidoreductase subunit F OS=Salmonella typhimurium GN=nuoF PE=3 SV=2)

HSP 1 Score: 130.183 bits (326), Expect = 9.373e-30
Identity = 74/218 (33.94%), Postives = 115/218 (52.75%), Query Frame = 2
Query:    5 GCPTTVTNVETVAVSPTILRRGPDWFAGFGRKNNSGTKLFCVSGHVNKPCTVEEEMSIPLKELIDRHCGGVRGGWDNLLAVIPGGSSVPLLPK-HICDDVLMDYDALKAVQSGLGTAAVIVMDKSTDVVDAIARLSYFYKHESCGRCTPCREGTGWLWMIMERLKVGNAKLEEIDMLQEVTKQI-EGHTICALGDAAAWPVQGLIRHFRPELERRIKE 652
            G PT V NVET+   P IL  G +W+    +  ++GTKL   SG V  P   E       +E+++ + GG+R G     A  PGG+    L + H+  D+ M+++++    S LGTA  + +D    +V  +  L  F+  ESCG CTPCR+G  W   I+  L+ G  +  +I+ L+++ + +  G T CA    A  P+Q  I++FR E E  IK+
Sbjct:  211 GKPTCVNNVETLCNVPAILANGVEWYQNISKSKDAGTKLMGFSGRVKNPGLWELPFGTTAREILEDYAGGMRDGL-KFKAWQPGGAGTDFLTEAHL--DLPMEFESIGKAGSRLGTALAMAVDHEIGMVSLVRNLEEFFARESCGWCTPCRDGLPWSVKILRALERGEGQPGDIETLEQLCRFLGPGKTFCAHAPGAVEPLQSAIKYFREEFEAGIKQ 425          
BLAST of CN181561 vs. ExPASy Swiss-Prot
Match: NUOF_BUCAI (NADH-quinone oxidoreductase subunit F OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=nuoF PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 4.652e-29
Identity = 71/216 (32.87%), Postives = 115/216 (53.24%), Query Frame = 2
Query:    5 GCPTTVTNVETVAVSPTILRRGPDWFAGFGRKNNSGTKLFCVSGHVNKPCTVEEEMSIPLKELIDRHCGGVRGGWDNLLAVIPGGSSVP-LLPKHICDDVLMDYDALKAVQSGLGTAAVIVMDKSTDVVDAIARLSYFYKHESCGRCTPCREGTGWLWMIMERLKVGNAKLEEIDMLQEVTKQIE-GHTICALGDAAAWPVQGLIRHFRPELERRI 646
            G PT V NVET++  P I+  G  W+    + +++GTKL   SG+V  P   E       +E+++ +  G++ G+ +L A  PGG+    LL +H+  D+ MD+  +    S LGTA  + +D  T +V  +  +  F+  ESCG CTPCR+G  W+  I++ L+       ++  L+++   +  G T CA    A  P+Q  I++FR E E  I
Sbjct:  213 GKPTCVNNVETLSNVPCIILNGVSWYKNLSKSSDTGTKLMGFSGNVRNPGVWELPFGTTAREILEDYAHGMKSGF-SLKAWQPGGAGTDFLLEEHL--DLPMDFKNISQAGSRLGTALSMAVDNKTSMVSLVYNIEKFFSRESCGLCTPCRDGLPWIVKILKSLEQNKGHKNDVKNLEKLCSHLSPGKTFCAHAPGAIEPLQSAIKYFRSEFESGI 425          
BLAST of CN181561 vs. ExPASy Swiss-Prot
Match: NUOF_BUCAP (NADH-quinone oxidoreductase subunit F OS=Buchnera aphidicola subsp. Schizaphis graminum GN=nuoF PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 6.717e-28
Identity = 72/217 (33.18%), Postives = 115/217 (53.00%), Query Frame = 2
Query:    5 GCPTTVTNVETVAVSPTILRRGPDWFAGFGRKNNS-GTKLFCVSGHVNKPCTVEEEMSIPLKELIDRHCGGVRGGWDNLLAVIPGGSSVP-LLPKHICDDVLMDYDALKAVQSGLGTAAVIVMDKSTDVVDAIARLSYFYKHESCGRCTPCREGTGWLWMIMERLKVGNAKLEEIDMLQEVTKQIE-GHTICALGDAAAWPVQGLIRHFRPELERRI 646
            G PT V NVET++  P+I+  G +W+    +  ++ GTKL   SG VN P   E       +E+++ +  G++ G   L +  PGG+    L+ KH+  D+ MD+ ++    S LGTA  + +D  T+++  +  +  F+  ESCG CTPCREG  W+  I+E L+       ++  L+ +   +  G T CA    A  P+Q  I++FR E E  I
Sbjct:  211 GKPTCVNNVETLSNVPSIVLHGVNWYKKLSKSTDTTGTKLMGFSGKVNNPGVWELPFGTTAREILEDYARGMKSGLF-LKSWQPGGAGTDFLIEKHL--DLPMDFTSIAKAGSRLGTAIAMAVDNKTNMISLVCNIEKFFSRESCGLCTPCREGLPWIVKILESLEKKEGHKNDVKNLERLCLDLSPGKTFCAHAPGAVEPLQSAIKYFRLEFEAGI 424          
BLAST of CN181561 vs. ExPASy Swiss-Prot
Match: NUOF_PSEAE (NADH-quinone oxidoreductase subunit F OS=Pseudomonas aeruginosa GN=nuoF PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.161e-26
Identity = 72/218 (33.03%), Postives = 111/218 (50.92%), Query Frame = 2
Query:    5 GCPTTVTNVETVAVSPTILRRGPDWFAGFGRKNNS--GTKLFCVSGHVNKPCTVEEEMSIPLKELIDRHCGGVRGGWDNLLAVIPGGSSVP-LLPKHICDDVLMDYDALKAVQSGLGTAAVIVMDKSTDVVDAIARLSYFYKHESCGRCTPCREGTGWLWMIMERLKVGNAKLEEIDMLQEVTKQI-EGHTICALGDAAAWPVQGLIRHFRPELERRI 646
            G PT V NVET+   P I+  G DW+    R  +   GTKL   SG V  P   E    +  +EL + + GG+R G+  L A  PGG+    LLP+H+  D  M    +  V + +GT   + +D S ++V  +  +  F+  ESCG CTPCR+G  W   ++  L+ G  +  +++ L+++   +  G T CA    A  P+   +++FR E E  I
Sbjct:  219 GKPTCVNNVETLCNVPAIVGNGVDWYKTLARPGSEDMGTKLMGFSGKVKNPGLWELPFGVSARELFEDYAGGMRDGFQ-LKAWQPGGAGTGFLLPEHL--DAQMFAGGIAKVGTRMGTGLAMAVDDSINMVSLLRNMEEFFARESCGWCTPCRDGLPWSVKLLRALERGEGQPGDLETLEQLVNFLGPGKTFCAHAPGAVEPLGSALKYFRAEFEAGI 433          
BLAST of CN181561 vs. ExPASy Swiss-Prot
Match: NUOF_AQUAE (NADH-quinone oxidoreductase subunit F OS=Aquifex aeolicus GN=nuoF PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.075e-25
Identity = 77/222 (34.68%), Postives = 115/222 (51.80%), Query Frame = 2
Query:    5 GCPTTVTNVETVAVSPTILRRGPDWFAGFGRKNNSGTKLFCVSGHVNKPCTVEEEMSIPLKELIDRHCGGVRGGWDNLLAVIPGG----SSVPLLPKHICDDVLMDYDALKAVQSGLGTAAVIVMDKSTDVVDAIARLSYFYKHESCGRCTPCREGTGWLWMIMERLKVGNAKLEEIDMLQEVTKQIEGHTICALGDAAAWPVQGLIRHFRPELERRIKEHA 658
            G PT V NVET+A  P I+  G + +   G  + +G KLF VSG V KP   E  M+  L+E+I ++ GG  G    + AV  G     SS  L       D+ MDY  L       GT  VIV+ +  D+V+A  +++ FY+HE+CG+CTPCR G      ++E++  G A  ++ +    V + I+  +IC LG  A   ++  +  F  E E+  K+ A
Sbjct:  213 GKPTVVNNVETIANVPFIISMGWEEYRYIGPSDYAGPKLFPVSGKVKKPGVYELPMNTTLREVIFKYAGGTLGN-KKVKAVFSGALDCFSSEEL-------DIPMDYSPLGFG----GTGTVIVLTEEDDIVEAALKIAEFYEHETCGQCTPCRVGCYEQANLLEKIYKGEATEQDWEGFDFVNRNIQPTSICGLGAVAGRLIRQTLEKFPEEWEKYRKKSA 422          
BLAST of CN181561 vs. ExPASy Swiss-Prot
Match: HOXF_RALEH (NAD-reducing hydrogenase hoxS subunit alpha OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=hoxF PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.516e-16
Identity = 58/217 (26.73%), Postives = 93/217 (42.86%), Query Frame = 2
Query:    5 GCPTTVTNVETVAVSPTILRRGPDWFAGFGRKNNSGTKLFCVSGHVNKPCTVEEEMSIPLKELIDRHCGGVRGGWDNLLAVIPGGSSVPLLPKHICDDVLMDYDALKAVQSGLGTAAVIVMDKSTDVVDAIARLSYFYKHESCGRCTPCREGTGWLWMIMERLKVGNAKLEEIDMLQEVTKQIEGHTICALGDAAAWPVQGLIRHFRPELERRIKEH 655
            G PT+V NVET A    I+  G DWF   G  +++GT+L  V+G  +KP   E E  + L E++      + G  D     I G       P   C  V  D +   A +      A  + +   D+++ +     F+  ESCG C PCR G   L   +E +  G A  +++D +      +   + C LG  +  P+   +  F    + ++  H
Sbjct:  369 GKPTSVNNVETFAAVSRIMEEGADWFRAMGTPDSAGTRLLSVAGDCSKPGIYEVEWGVTLNEVL-----AMVGARDARAVQISG-------PSGECVSVAKDGERKLAYEDLSCNGAFTIFNCKRDLLEIVRDHMQFFVEESCGICVPCRAGNVDLHRKVEWVIAGKACQKDLDDMVSWGALVRRTSRCGLGATSPKPILTTLEKFPEIYQNKLVRH 573          
The following BLAST results are available for this feature:
BLAST of CN181561 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
NUOF_ECOLI5.495e-3033.94NADH-quinone oxidoreductase subunit F OS=Escherich... [more]
NUOF_SALTY9.373e-3033.94NADH-quinone oxidoreductase subunit F OS=Salmonell... [more]
NUOF_BUCAI4.652e-2932.87NADH-quinone oxidoreductase subunit F OS=Buchnera ... [more]
NUOF_BUCAP6.717e-2833.18NADH-quinone oxidoreductase subunit F OS=Buchnera ... [more]
NUOF_PSEAE2.161e-2633.03NADH-quinone oxidoreductase subunit F OS=Pseudomon... [more]
NUOF_AQUAE4.075e-2534.68NADH-quinone oxidoreductase subunit F OS=Aquifex a... [more]
HOXF_RALEH4.516e-1626.73NAD-reducing hydrogenase hoxS subunit alpha OS=Ral... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS04_0001C01_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001C01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181561 ID=CN181561; Name=CN181561; organism=Citrus sinensis; type=EST; length=658bp
GAGGGGTTGTCCCACCACTGTCACCAATGTGGAAACTGTGGCCGTTTCTC
CCACCATTTTAAGGCGTGGACCGGACTGGTTTGCCGGTTTTGGCAGGAAG
AACAATTCTGGTACAAAATTGTTTTGTGTGTCGGGCCATGTGAATAAGCC
TTGCACAGTTGAAGAGGAGATGAGTATTCCCCTCAAGGAGTTGATAGATA
GACACTGTGGTGGTGTTCGAGGTGGATGGGATAATTTACTTGCAGTAATA
CCAGGGGGTTCTTCAGTTCCTTTGCTTCCCAAACATATATGTGATGATGT
GCTGATGGATTATGATGCTCTGAAGGCTGTTCAATCAGGATTGGGAACTG
CTGCTGTGATTGTCATGGACAAATCAACTGATGTTGTCGATGCAATTGCT
AGGCTCTCATACTTCTATAAGCACGAAAGCTGTGGGCGGTGCACTCCATG
CAGGGAGGGAACAGGATGGCTTTGGATGATCATGGAAAGATTGAAGGTTG
GAAATGCAAAGTTGGAGGAGATTGATATGCTTCAGGAGGTGACCAAGCAG
ATTGAAGGGCACACAATCTGTGCACTGGGTGATGCAGCTGCTTGGCCTGT
TCAGGGTCTCATACGACATTTTAGGCCTGAGCTTGAGAGAAGGATCAAAG
AGCATGCT
back to top