CN181560

Overview
NameCN181560
Unique NameCN181560
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length636
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN181560 vs. ExPASy Swiss-Prot
Match: NDUV1_GORGO (NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial OS=Gorilla gorilla gorilla GN=NDUFV1 PE=2 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 9.696e-37
Identity = 71/103 (68.93%), Postives = 84/103 (81.55%), Query Frame = -3
Query:  326 VIVMDKSTDVVDAIARLSYFYKHESCGRCTPCREGTGWLWMIMERLKVGNAKLEEIDMLQEVTKQIEGHTICALGDAAAWPVQGLIRHFRPELERRIKEHAER 634
            VIVMD+STD+V AIARL  FYKHESCG+CTPCREG  W+  +M R   G+A+  EID L E++KQIEGHTICALGD AAWPVQGLIRHFRPELE R++  A++
Sbjct:  354 VIVMDRSTDIVKAIARLIEFYKHESCGQCTPCREGVDWMNKVMARFVRGDARPAEIDSLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPELEERMQRFAQQ 456          
BLAST of CN181560 vs. ExPASy Swiss-Prot
Match: NDUV1_MOUSE (NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial OS=Mus musculus GN=Ndufv1 PE=1 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.266e-36
Identity = 71/103 (68.93%), Postives = 84/103 (81.55%), Query Frame = -3
Query:  326 VIVMDKSTDVVDAIARLSYFYKHESCGRCTPCREGTGWLWMIMERLKVGNAKLEEIDMLQEVTKQIEGHTICALGDAAAWPVQGLIRHFRPELERRIKEHAER 634
            VIVMD+STD+V AIARL  FYKHESCG+CTPCREG  W+  +M R   G+A+  EID L E++KQIEGHTICALGD AAWPVQGLIRHFRPELE R++  A++
Sbjct:  354 VIVMDRSTDIVKAIARLIEFYKHESCGQCTPCREGVDWMNKVMARFVKGDARPAEIDSLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPELEDRMQRFAQQ 456          
BLAST of CN181560 vs. ExPASy Swiss-Prot
Match: NDUV1_MACFA (NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial OS=Macaca fascicularis GN=NDUFV1 PE=2 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 4.812e-36
Identity = 70/103 (67.96%), Postives = 84/103 (81.55%), Query Frame = -3
Query:  326 VIVMDKSTDVVDAIARLSYFYKHESCGRCTPCREGTGWLWMIMERLKVGNAKLEEIDMLQEVTKQIEGHTICALGDAAAWPVQGLIRHFRPELERRIKEHAER 634
            VIVMD+STD+V AIARL  FYK+ESCG+CTPCREG  W+  +M R   G+A+  EID L E++KQIEGHTICALGD AAWPVQGLIRHFRPELE R++  A++
Sbjct:  354 VIVMDRSTDIVKAIARLIEFYKYESCGQCTPCREGVDWMNKVMARFVRGDARPAEIDSLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPELEERMQRFAQQ 456          
BLAST of CN181560 vs. ExPASy Swiss-Prot
Match: NUOF_MYCTU (NADH-quinone oxidoreductase subunit F OS=Mycobacterium tuberculosis GN=nuoF PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 3.955e-22
Identity = 49/90 (54.44%), Postives = 62/90 (68.89%), Query Frame = -3
Query:  359 VMDKSTDVVDAIARLSYFYKHESCGRCTPCREGTGWLWMIMERLKVGNAKLEEIDMLQEVTKQIEGHTICALGDAAAWPVQGLIRHFRPE 628
            + D++T VV A+ R + FYKHESCG+CTPCREGT WL  I ERL+ G    E+ID L +++  I G + CALGD AA PV   I+HFR E
Sbjct:  330 IFDETTCVVRAVRRWTEFYKHESCGKCTPCREGTFWLDKIYERLETGRGSHEDIDKLLDISDSILGKSFCALGDGAASPVMSSIKHFRDE 419          
BLAST of CN181560 vs. ExPASy Swiss-Prot
Match: NUOF_MYCBO (NADH-quinone oxidoreductase subunit F OS=Mycobacterium bovis GN=nuoF PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 3.955e-22
Identity = 49/90 (54.44%), Postives = 62/90 (68.89%), Query Frame = -3
Query:  359 VMDKSTDVVDAIARLSYFYKHESCGRCTPCREGTGWLWMIMERLKVGNAKLEEIDMLQEVTKQIEGHTICALGDAAAWPVQGLIRHFRPE 628
            + D++T VV A+ R + FYKHESCG+CTPCREGT WL  I ERL+ G    E+ID L +++  I G + CALGD AA PV   I+HFR E
Sbjct:  330 IFDETTCVVRAVRRWTEFYKHESCGKCTPCREGTFWLDKIYERLETGRGSHEDIDKLLDISDSILGKSFCALGDGAASPVMSSIKHFRDE 419          
BLAST of CN181560 vs. ExPASy Swiss-Prot
Match: NUOF_STRCO (NADH-quinone oxidoreductase subunit F OS=Streptomyces coelicolor GN=nuoF PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 8.247e-20
Identity = 41/93 (44.09%), Postives = 61/93 (65.59%), Query Frame = -3
Query:  344 DKSTDVVDAIARLSYFYKHESCGRCTPCREGTGWLWMIMERLKVGNAKLEEIDMLQEVTKQIEGHTICALGDAAAWPVQGLIRHFRPELERRI 622
            D++T VV A+ R + FY HESCG+CTPCREGT WL  ++  ++ G  ++ ++D L ++   I G + CALGD AA P+   +++FR E E  I
Sbjct:  334 DETTCVVRAVTRWTEFYAHESCGKCTPCREGTYWLVQLLRDIEAGKGQMSDLDKLNDIADNINGKSFCALGDGAASPIFSSLKYFREEYEEHI 426          
BLAST of CN181560 vs. ExPASy Swiss-Prot
Match: NUOF2_RHIME (NADH-quinone oxidoreductase subunit F 2 OS=Rhizobium meliloti GN=nuoF2 PE=3 SV=2)

HSP 1 Score: 93.9745 bits (232), Expect = 6.981e-19
Identity = 41/99 (41.41%), Postives = 63/99 (63.64%), Query Frame = -3
Query:  338 VIVMDKSTDVVDAIARLSYFYKHESCGRCTPCREGTGWLWMIMERLKVGNAKLEEIDMLQEVTKQIEGHTICALGDAAAWPVQGLIRHFRPELERRIKE 634
            V+V+D ST +V    R+  F+ HESCG+CTPCREG  W   ++ R++ G  +  +++ L+ + K I G+T CALGD AA  ++  ++HFR E    I+E
Sbjct:  317 VVVIDDSTCMVKLATRIIEFFHHESCGKCTPCREGLDWTVKVLRRIEAGEGETGDLEQLEMLCKGIFGNTFCALGDGAAMGLRAALKHFRAEFVAHIEE 415          
BLAST of CN181560 vs. ExPASy Swiss-Prot
Match: NQO1_THET8 (NADH-quinone oxidoreductase subunit 1 OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=nqo1 PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 3.831e-17
Identity = 38/93 (40.86%), Postives = 62/93 (66.67%), Query Frame = -3
Query:  359 VIVMDKSTDVVDAIARLSYFYKHESCGRCTPCREG-TGWLWMIMERLKVGNAKLEEIDMLQEVTKQIEGHTICALGDAAAWPVQGLIRHFRPE 634
            VI++ +   +VDA+  L+ FY HESCG+CTPCREG  G++  +  ++  G  + ++++ L+ +   IEG + C L DAA WPV+G +RHF+ +
Sbjct:  328 VILIPERVSMVDAMWNLTRFYAHESCGKCTPCREGVAGFMVNLFAKIGTGQGEEKDVENLEALLPLIEGRSFCPLADAAVWPVKGSLRHFKDQ 420          
BLAST of CN181560 vs. ExPASy Swiss-Prot
Match: NUOF_ECOLI (NADH-quinone oxidoreductase subunit F OS=Escherichia coli (strain K12) GN=nuoF PE=1 SV=3)

HSP 1 Score: 69.707 bits (169), Expect = 1.410e-11
Identity = 34/99 (34.34%), Postives = 55/99 (55.56%), Query Frame = -3
Query:  338 IVMDKSTDVVDAIARLSYFYKHESCGRCTPCREGTGWLWMIMERLKVGNAKLEEIDMLQEVTKQI-EGHTICALGDAAAWPVQGLIRHFRPELERRIKE 631
            + +D   ++V  +  L  F+  ESCG CTPCR+G  W   I+  L+ G  +  +I+ L+++ + +  G T CA    A  P+Q  I++FR E E  IK+
Sbjct:  327 MAVDHEINMVSLVRNLEEFFARESCGWCTPCRDGLPWSVKILRALERGEGQPGDIETLEQLCRFLGPGKTFCAHAPGAVEPLQSAIKYFREEFEAGIKQ 425          
BLAST of CN181560 vs. ExPASy Swiss-Prot
Match: NUOF_SALTY (NADH-quinone oxidoreductase subunit F OS=Salmonella typhimurium GN=nuoF PE=3 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 2.405e-11
Identity = 34/99 (34.34%), Postives = 54/99 (54.55%), Query Frame = -3
Query:  338 IVMDKSTDVVDAIARLSYFYKHESCGRCTPCREGTGWLWMIMERLKVGNAKLEEIDMLQEVTKQI-EGHTICALGDAAAWPVQGLIRHFRPELERRIKE 631
            + +D    +V  +  L  F+  ESCG CTPCR+G  W   I+  L+ G  +  +I+ L+++ + +  G T CA    A  P+Q  I++FR E E  IK+
Sbjct:  327 MAVDHEIGMVSLVRNLEEFFARESCGWCTPCRDGLPWSVKILRALERGEGQPGDIETLEQLCRFLGPGKTFCAHAPGAVEPLQSAIKYFREEFEAGIKQ 425          
The following BLAST results are available for this feature:
BLAST of CN181560 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
NDUV1_GORGO9.696e-3768.93NADH dehydrogenase [ubiquinone] flavoprotein 1, mi... [more]
NDUV1_MOUSE1.266e-3668.93NADH dehydrogenase [ubiquinone] flavoprotein 1, mi... [more]
NDUV1_MACFA4.812e-3667.96NADH dehydrogenase [ubiquinone] flavoprotein 1, mi... [more]
NUOF_MYCTU3.955e-2254.44NADH-quinone oxidoreductase subunit F OS=Mycobacte... [more]
NUOF_MYCBO3.955e-2254.44NADH-quinone oxidoreductase subunit F OS=Mycobacte... [more]
NUOF_STRCO8.247e-2044.09NADH-quinone oxidoreductase subunit F OS=Streptomy... [more]
NUOF2_RHIME6.981e-1941.41NADH-quinone oxidoreductase subunit F 2 OS=Rhizobi... [more]
NQO1_THET83.831e-1740.86NADH-quinone oxidoreductase subunit 1 OS=Thermus t... [more]
NUOF_ECOLI1.410e-1134.34NADH-quinone oxidoreductase subunit F OS=Escherich... [more]
NUOF_SALTY2.405e-1134.34NADH-quinone oxidoreductase subunit F OS=Salmonell... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001C01_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001C01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181560 ID=CN181560; Name=CN181560; organism=Citrus sinensis; type=EST; length=636bp
TCCTCAGATGAGCCAGAATGTCATGTTCAAGAAATACATGAAACAACTTT
TTTAAGTATCCGTGCCCAGCTCATAAAAAAAAAAAAAAAAGGTAGCATCC
ATGCCCAGATACAGAGGATACATACACCATCATTTCTCCAGGACAGTAAA
TGAAGAATCCATAATTCATACAGCTTAAAACAAACCAAATTCTAACAAAA
TCTTCAGATGCTTGAATTACTCCCAATATCTGGGATGCTTTCCTCAGTTT
TATTCCACAATATCGACCATTTGAAGAAAAAAATTACCTGAGAAGAAAAA
TTTAAGCTGTGGCCTCCAGCAGCTCCCTCTCAGCATGCTCTTTGATCCTT
CTCTCAAGCTCAGGCCTAAAATGTCGTATGAGACCCTGAACAGGCCAAGC
AGCTGCATCACCCAGTGCACAGATTGTGTGCCCTTCAATCTGCTTGGTCA
CCTCCTGAAGCATATCAATCTCCTCCAACTTTGCATTTCCAACCTTCAAT
CTTTCCATGATCATCCAAAGCCATCCTGTTCCCTCCCTGCATGGAGTGCA
CCGCCCACAGCTTTCGTGCTTATAGAAGTATGAGAGCCTAGCAATTGCAT
CGACAACATCAGTTGATTTGTCCATGACAATCACAG
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