CN181560

Overview
NameCN181560
Unique NameCN181560
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length636
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN181560 vs. ExPASy Swiss-Prot
Match: NUOF_BUCAP (NADH-quinone oxidoreductase subunit F OS=Buchnera aphidicola subsp. Schizaphis graminum GN=nuoF PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.141e-11
Identity = 32/97 (32.99%), Postives = 51/97 (52.58%), Query Frame = -3
Query:  344 IVMDKSTDVVDAIARLSYFYKHESCGRCTPCREGTGWLWMIMERLKVGNAKLEEIDMLQEVTKQIE-GHTICALGDAAAWPVQGLIRHFRPELERRI 631
            + +D  T+++  +  +  F+  ESCG CTPCREG  W+  I+E L+       ++  L+ +   +  G T CA    A  P+Q  I++FR E E  I
Sbjct:  328 MAVDNKTNMISLVCNIEKFFSRESCGLCTPCREGLPWIVKILESLEKKEGHKNDVKNLERLCLDLSPGKTFCAHAPGAVEPLQSAIKYFRLEFEAGI 424          
BLAST of CN181560 vs. ExPASy Swiss-Prot
Match: NUOF_BUCBP (NADH-quinone oxidoreductase subunit F OS=Buchnera aphidicola subsp. Baizongia pistaciae GN=nuoF PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.358e-11
Identity = 31/94 (32.98%), Postives = 55/94 (58.51%), Query Frame = -3
Query:  353 IVMDKSTDVVDAIARLSYFYKHESCGRCTPCREGTGWLWMIMERLKVGNAKLEEIDMLQEVTKQI-EGHTICALGDAAAWPVQGLIRHFRPELE 631
            + +D S  +V  +  +  F+  ESCG CTPCR+G  W+  I++ L+      E+I++L+++ +Q+  G T CA    A  P++  +++FR E E
Sbjct:  330 MAVDDSVSIVSLVRNIEEFFSRESCGFCTPCRDGLPWIVKILKVLEQKIGVPEDIEILEQLCEQLGPGRTFCAHAPGAIEPLKSALKYFRLEFE 423          
BLAST of CN181560 vs. ExPASy Swiss-Prot
Match: NUOF_BUCAI (NADH-quinone oxidoreductase subunit F OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=nuoF PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.997e-11
Identity = 31/97 (31.96%), Postives = 51/97 (52.58%), Query Frame = -3
Query:  344 IVMDKSTDVVDAIARLSYFYKHESCGRCTPCREGTGWLWMIMERLKVGNAKLEEIDMLQEVTKQIE-GHTICALGDAAAWPVQGLIRHFRPELERRI 631
            + +D  T +V  +  +  F+  ESCG CTPCR+G  W+  I++ L+       ++  L+++   +  G T CA    A  P+Q  I++FR E E  I
Sbjct:  329 MAVDNKTSMVSLVYNIEKFFSRESCGLCTPCRDGLPWIVKILKSLEQNKGHKNDVKNLEKLCSHLSPGKTFCAHAPGAIEPLQSAIKYFRSEFESGI 425          
BLAST of CN181560 vs. ExPASy Swiss-Prot
Match: NUOF_AQUAE (NADH-quinone oxidoreductase subunit F OS=Aquifex aeolicus GN=nuoF PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 9.139e-11
Identity = 34/105 (32.38%), Postives = 59/105 (56.19%), Query Frame = -3
Query:  320 VIVMDKSTDVVDAIARLSYFYKHESCGRCTPCREGTGWLWMIMERLKVGNAKLEEIDMLQEVTKQIEGHTICALGDAAAWPVQGLIRHFRPELERRIKEHAEREL 634
            VIV+ +  D+V+A  +++ FY+HE+CG+CTPCR G      ++E++  G A  ++ +    V + I+  +IC LG  A   ++  +  F  E E+  K+ A   L
Sbjct:  322 VIVLTEEDDIVEAALKIAEFYEHETCGQCTPCRVGCYEQANLLEKIYKGEATEQDWEGFDFVNRNIQPTSICGLGAVAGRLIRQTLEKFPEEWEKYRKKSASLPL 426          
The following BLAST results are available for this feature:
BLAST of CN181560 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
NUOF_BUCAP3.141e-1132.99NADH-quinone oxidoreductase subunit F OS=Buchnera ... [more]
NUOF_BUCBP5.358e-1132.98NADH-quinone oxidoreductase subunit F OS=Buchnera ... [more]
NUOF_BUCAI6.997e-1131.96NADH-quinone oxidoreductase subunit F OS=Buchnera ... [more]
NUOF_AQUAE9.139e-1132.38NADH-quinone oxidoreductase subunit F OS=Aquifex a... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS04_0001C01_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001C01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181560 ID=CN181560; Name=CN181560; organism=Citrus sinensis; type=EST; length=636bp
TCCTCAGATGAGCCAGAATGTCATGTTCAAGAAATACATGAAACAACTTT
TTTAAGTATCCGTGCCCAGCTCATAAAAAAAAAAAAAAAAGGTAGCATCC
ATGCCCAGATACAGAGGATACATACACCATCATTTCTCCAGGACAGTAAA
TGAAGAATCCATAATTCATACAGCTTAAAACAAACCAAATTCTAACAAAA
TCTTCAGATGCTTGAATTACTCCCAATATCTGGGATGCTTTCCTCAGTTT
TATTCCACAATATCGACCATTTGAAGAAAAAAATTACCTGAGAAGAAAAA
TTTAAGCTGTGGCCTCCAGCAGCTCCCTCTCAGCATGCTCTTTGATCCTT
CTCTCAAGCTCAGGCCTAAAATGTCGTATGAGACCCTGAACAGGCCAAGC
AGCTGCATCACCCAGTGCACAGATTGTGTGCCCTTCAATCTGCTTGGTCA
CCTCCTGAAGCATATCAATCTCCTCCAACTTTGCATTTCCAACCTTCAAT
CTTTCCATGATCATCCAAAGCCATCCTGTTCCCTCCCTGCATGGAGTGCA
CCGCCCACAGCTTTCGTGCTTATAGAAGTATGAGAGCCTAGCAATTGCAT
CGACAACATCAGTTGATTTGTCCATGACAATCACAG
back to top