CN181559

Overview
NameCN181559
Unique NameCN181559
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length626
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2575 contig Csv1_Contig2575:261..887. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN181559 vs. ExPASy Swiss-Prot
Match: FBRL_ENCCU (rRNA 2'-O-methyltransferase fibrillarin OS=Encephalitozoon cuniculi GN=NOP1 PE=3 SV=1)

HSP 1 Score: 273.092 bits (697), Expect = 8.142e-73
Identity = 134/204 (65.69%), Postives = 169/204 (82.84%), Query Frame = 1
Query:   13 GVFIAKGKEDALVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGVRVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQV 624
            GV+I++GKED L+T+NLV G +VY EKR++V  E G KVEYR+WN +RSKLAA ++ G +NI ++PG +VLYLGA+SGTTVSHVSDIVG +GVVYAVEFS RSGRDL+NM+ KR N++PIIEDAR+P++YRMLV +VD IFSDV+QPDQ RI+ALNA YFLK GG   +SIKANC++S VPAE VF  EV  L+++  +P EQV
Sbjct:   57 GVYISRGKEDLLLTRNLVPGVSVYGEKRVAVDLE-GMKVEYRVWNAYRSKLAAGIVCGAENIHMEPGSKVLYLGASSGTTVSHVSDIVGKDGVVYAVEFSERSGRDLINMSMKRPNIVPIIEDARYPSRYRMLVPIVDCIFSDVSQPDQTRIVALNAQYFLKEGGGVDVSIKANCVNSAVPAETVFADEVNILRKNSIRPKEQV 259          
BLAST of CN181559 vs. ExPASy Swiss-Prot
Match: FBRL_LEIMA (rRNA 2'-O-methyltransferase fibrillarin OS=Leishmania major PE=3 SV=1)

HSP 1 Score: 267.7 bits (683), Expect = 3.421e-71
Identity = 136/208 (65.38%), Postives = 164/208 (78.85%), Query Frame = 1
Query:    7 HEGVFIAKGKEDALVTKNLVAGEAVYNEKRISVQNEDG--TKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGVRVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQV 624
            H GVFI+K K D+L T N+V G +VY EKRI +    G   K EYR+WNP+RSKLA+A+  GV +I + PG +VLYLG A+GTTVSHVSD+VGP G+VYAVEFSHR GRDLV M+K+R  ++PI+EDAR+P KYRMLV MVD IF DVAQPDQARILALNA  FL+ GGH+VISIKANCIDST+ A  V  SE+ KL++D+ KP EQV
Sbjct:   67 HPGVFISKAKTDSLCTLNMVPGISVYGEKRIELGATQGGDDKKEYRLWNPYRSKLASAIYAGVSSIHMGPGSKVLYLGGATGTTVSHVSDLVGPEGMVYAVEFSHRVGRDLVEMSKRRP-IVPIVEDARYPMKYRMLVPMVDCIFMDVAQPDQARILALNAQAFLQNGGHYVISIKANCIDSTLEAPVVIASELNKLKKDKLKPLEQV 273          
BLAST of CN181559 vs. ExPASy Swiss-Prot
Match: FBRL_GIALA (rRNA 2'-O-methyltransferase fibrillarin OS=Giardia lamblia PE=3 SV=1)

HSP 1 Score: 258.455 bits (659), Expect = 2.075e-68
Identity = 135/206 (65.53%), Postives = 162/206 (78.64%), Query Frame = 1
Query:    7 HEGVFIAKGKEDALVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGVRVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQV 624
            ++G+FI+ G+ D LVTK+L  G AVY EKRISV+  + +K+EYR WNPFRSKL AAV   V ++ IKPG +VLYLGAASGTTVSHVSDIVGP G VYAVEFS RSGRDL+ +AK RTNV PII DARHP KYRM+V  VD IFSDVAQPDQARI+A NA Y+LKA G  +ISIKA+ +DST+  EAVF  E++ L++  FK  EQ+
Sbjct:  102 YDGIFISHGRGDVLVTKSLAPGVAVYGEKRISVEGTE-SKIEYREWNPFRSKLGAAVRLNVLDMPIKPGAKVLYLGAASGTTVSHVSDIVGPTGAVYAVEFSQRSGRDLLEVAKARTNVYPIIADARHPYKYRMIVPEVDCIFSDVAQPDQARIVAENARYYLKANGGMLISIKASSVDSTLKPEAVFAREIETLREHDFKCKEQL 306          
BLAST of CN181559 vs. ExPASy Swiss-Prot
Match: FLPA_PYRAE (Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase OS=Pyrobaculum aerophilum GN=flpA PE=3 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 6.941e-48
Identity = 105/212 (49.53%), Postives = 138/212 (65.09%), Query Frame = 1
Query:    1 EGHEGVFIAKGKE--DALVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGVRVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVN--MAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQV 624
            E H GV++ K ++  + + TKNL  G  VY E+ I    +     EYR WNP+RSKLAAA+L G+  + IK G  +LYLGAASGTT SH+SDIVG NG++Y+VEFS R  R+ +   + + R NV+PI+ DAR P +Y   V  VDV++ DVAQP QA+ILA NA YFLK GGH ++ IKA  ID T PA   F+ E+  L++  F   E V
Sbjct:   12 ERHYGVYVVKFEDGTERIATKNLTPGRRVYGERLIKWGGD-----EYREWNPYRSKLAAAILNGLKLVPIKEGTHILYLGAASGTTPSHISDIVGENGLIYSVEFSPRVFREFMEKLVDQGRRNVVPILGDARFPYQYAHYVKGVDVVYIDVAQPAQAKILADNADYFLKPGGHVMLVIKAMSIDVTAPATETFKQEINTLKERGFDILETV 218          
BLAST of CN181559 vs. ExPASy Swiss-Prot
Match: FLPA_THEON (Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase OS=Thermococcus onnurineus (strain NA1) GN=flpA PE=3 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 2.019e-47
Identity = 103/192 (53.65%), Postives = 129/192 (67.19%), Query Frame = 1
Query:   16 VFIAKGKEDALVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGVRVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKL 591
            VFI +   + + TKNLV G+ VY E+ I  + E     EYR+WNP RSKL AA+L G+ +  IKPG  VLYLG ASGTT SHVSDIVG  G V+ VEFS R  R+LV + ++R N++PI+ DA  P  YR LV  VDVIF DVAQP QA+IL  NA  FLK+GG+ +IS+K+  ID T   E VF+   K+L
Sbjct:   13 VFIDEDGSEKIATKNLVPGQKVYGERLIKFEGE-----EYRVWNPRRSKLGAAILNGLKHFPIKPGSTVLYLGVASGTTASHVSDIVGWEGKVFGVEFSPRVLRELVPIVEERRNIVPILGDATKPEGYRALVPKVDVIFEDVAQPTQAKILIDNAKVFLKSGGYGMISVKSRSIDVTKEPEQVFKEVEKEL 199          
BLAST of CN181559 vs. ExPASy Swiss-Prot
Match: FLPA_PYRIL (Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=flpA PE=3 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 2.638e-47
Identity = 104/212 (49.06%), Postives = 141/212 (66.51%), Query Frame = 1
Query:    1 EGHEGVFIAKGKE--DALVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGVRVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVN--MAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQV 624
            E H GV++ K ++  + L TKNL  G+ VY E+ I  ++E     EYR WNP+RSKLAAA++ G+  I I+ G  +LYLGAASGTT SH+SDIVG  G++Y+VEFS R  R+ +   + + R NV+PI+ DAR P +Y   V  VDV++ DVAQP QA+ILA NA YFLK GG+ ++ IKA  ID T PA   F+ E+  L++  F+  E V
Sbjct:   12 EHHFGVYVVKFEDGTERLATKNLTPGKRVYGERLIKWRDE-----EYREWNPYRSKLAAAIVNGIKFIPIQEGTHMLYLGAASGTTPSHISDIVGERGLIYSVEFSPRVFREFIEKLVDQGRRNVVPILGDARFPYQYAHYVKGVDVVYIDVAQPAQAKILADNADYFLKPGGYVMLVIKAMSIDVTAPATETFKQEINTLKERGFEILETV 218          
BLAST of CN181559 vs. ExPASy Swiss-Prot
Match: FLPA_PYRKO (Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase OS=Pyrococcus kodakaraensis GN=flpA PE=3 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 7.674e-47
Identity = 106/206 (51.46%), Postives = 136/206 (66.02%), Query Frame = 1
Query:   13 GVFIAKGKE--DALVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGVRVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQV 624
            GV+I    +  + + TKNLV G+ VY E+ +  + E     EYRIWNP RSKL AA+L G+ N  IKPG  VLYLG ASGTT SHVSDIVG  G V+ VEFS R  R+LV + ++R N++PI+ DA  P  YR LV  VDVIF DVAQP QA+IL  NA  +LK+GG+ +IS+K+  ID T   E VF+ EV+K     F+  E++
Sbjct:   10 GVYIVIDDDGSEKIATKNLVPGQRVYGERVVKFEGE-----EYRIWNPTRSKLGAAILNGLKNFPIKPGSTVLYLGVASGTTASHVSDIVGWEGKVFGVEFSPRVLRELVPLVEERRNIVPILGDATKPEGYRALVPKVDVIFEDVAQPTQAKILIDNAKVYLKSGGYGMISVKSRSIDVTKEPEQVFK-EVEKELSTYFEVVERL 209          
BLAST of CN181559 vs. ExPASy Swiss-Prot
Match: FLPA_THESM (Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase OS=Thermococcus sibiricus (strain MM 739 / DSM 12597) GN=flpA PE=3 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 1.309e-46
Identity = 101/195 (51.79%), Postives = 133/195 (68.21%), Query Frame = 1
Query:   40 DALVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGVRVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQV 624
            + + TKNLV G+ VY E+ +  + E     EYRIWNP RSKLAAA+L  + N  IKPG  VLYLG ASGTT SHVSDI+G  G ++ +EFS R  R+LV + ++R N++PI+ DA  P +YR LV  VDVIF DVAQP QA+IL  NA  +LK+GG+ +ISIK+  ID T   E VF+ EV+K   + F+  E++
Sbjct:   21 ERIATKNLVPGQKVYGERIVKWKGE-----EYRIWNPNRSKLAAAILNDLKNFPIKPGTTVLYLGIASGTTASHVSDIIGWEGKIFGIEFSPRVLRELVPLVEERRNIVPILGDATKPEEYRALVTKVDVIFEDVAQPTQAKILIDNAKAYLKSGGYGMISIKSRSIDVTKEPEEVFR-EVEKELSEYFEVVERI 209          
BLAST of CN181559 vs. ExPASy Swiss-Prot
Match: FLPA_THEGJ (Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=flpA PE=3 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 1.309e-46
Identity = 106/206 (51.46%), Postives = 136/206 (66.02%), Query Frame = 1
Query:   13 GVFIAKGKE--DALVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGVRVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQV 624
            GV+I    +  + + TKNLV G+ VY E+ I  + E     EYRIWNP RSKL AA+L G+ N  IKPG  VLYLG ASGTT SHVSDIVG  G ++ VEFS R  R+LV + ++R N++PI+ DA  P  YR LV  VDVIF DVAQP QA+IL  NA  FLK+GG+ +IS+K+  ID T   E VF+ EV++     F+  E++
Sbjct:   10 GVYIVIDDDGSEKIATKNLVPGQRVYGERVIKFEGE-----EYRIWNPSRSKLGAAILNGLKNFPIKPGSTVLYLGIASGTTASHVSDIVGWEGKIFGVEFSPRVLRELVPIVEERRNIVPILGDATKPEGYRALVPKVDVIFEDVAQPTQAKILIDNAKVFLKSGGYGMISVKSRSIDVTKEPEEVFK-EVERELASYFEVVERL 209          
BLAST of CN181559 vs. ExPASy Swiss-Prot
Match: FLPA_PYRFU (Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase OS=Pyrococcus furiosus GN=flpA PE=1 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 2.233e-46
Identity = 103/203 (50.74%), Postives = 134/203 (66.01%), Query Frame = 1
Query:   16 VFIAKGKEDALVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGVRVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQV 624
            V I     + + TKNLV G+ VY E+ I  + E     EYRIWNP RSKL AA++ G+ N  IKPG  VLYLG ASGTT SHVSDIVG  G +Y +EFS R  R+LV + ++R N+IPI+ DA  P +YR LV  VDVIF DVAQP QA+IL  NA  +LK GG+ +I++K+  ID T   E VF+ EV++   + F+  E++
Sbjct:   14 VVIDDDGSEKIATKNLVPGQRVYGERVIKWEGE-----EYRIWNPHRSKLGAAIVNGLKNFPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIYGIEFSPRVLRELVPIVEERRNIIPILGDATKPEEYRALVTKVDVIFEDVAQPTQAKILIDNAKAYLKRGGYGMIAVKSRSIDVTKEPEQVFK-EVERELSEYFEVIERL 210          
The following BLAST results are available for this feature:
BLAST of CN181559 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 73
Match NameE-valueIdentityDescription
FBRL_ENCCU8.142e-7365.69rRNA 2'-O-methyltransferase fibrillarin OS=Encepha... [more]
FBRL_LEIMA3.421e-7165.38rRNA 2'-O-methyltransferase fibrillarin OS=Leishma... [more]
FBRL_GIALA2.075e-6865.53rRNA 2'-O-methyltransferase fibrillarin OS=Giardia... [more]
FLPA_PYRAE6.941e-4849.53Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase ... [more]
FLPA_THEON2.019e-4753.65Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase ... [more]
FLPA_PYRIL2.638e-4749.06Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase ... [more]
FLPA_PYRKO7.674e-4751.46Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase ... [more]
FLPA_THESM1.309e-4651.79Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase ... [more]
FLPA_THEGJ1.309e-4651.46Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase ... [more]
FLPA_PYRFU2.233e-4650.74Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001B24_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001B24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181559 ID=CN181559; Name=CN181559; organism=Citrus sinensis; type=EST; length=626bp
GAGGGACACGAAGGAGTGTTCATTGCCAAGGGCAAAGAAGACGCCCTTGT
CACTAAGAATCTCGTCGCCGGTGAGGCTGTCTACAATGAGAAGAGGATCT
CCGTCCAGAATGAAGATGGAACCAAAGTTGAGTATAGAATTTGGAATCCC
TTCCGTTCCAAATTAGCTGCAGCTGTTCTTGGTGGTGTTGATAATATTTG
GATTAAACCTGGTGTTAGGGTTCTATACCTTGGTGCTGCTTCCGGCACAA
CTGTCTCACATGTTTCGGACATTGTTGGCCCTAATGGAGTAGTTTATGCA
GTGGAATTTTCTCATAGAAGTGGTAGAGACTTGGTCAATATGGCAAAGAA
GAGAACCAATGTTATACCCATAATTGAAGATGCTAGACATCCTGCCAAGT
ACCGTATGTTGGTCGGTATGGTAGATGTAATATTTTCTGACGTTGCCCAA
CCGGATCAGGCGAGGATTTTAGCCCTGAATGCATCATATTTTCTCAAAGC
TGGAGGTCATTTTGTTATTTCTATCAAGGCAAACTGCATAGATTCCACTG
TTCCTGCTGAGGCAGTGTTCCAGAGTGAAGTTAAGAAGCTGCAACAGGAT
CAGTTCAAACCCTTTGAGCAAGTGAC
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