CN181559

Overview
NameCN181559
Unique NameCN181559
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length626
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2575 contig Csv1_Contig2575:261..887. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN181559 vs. ExPASy Swiss-Prot
Match: FLPA_METJA (Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase OS=Methanocaldococcus jannaschii GN=flpA PE=1 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 6.292e-41
Identity = 89/193 (46.11%), Postives = 132/193 (68.39%), Query Frame = 1
Query:   46 LVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGVRVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQV 624
            + TK++V G+ VY+EK I + +E     EYRIWNP +SKLAAA++ G+  + IK   ++LYLGA++GTT SHV+DI    G+VYA+E++ R  R+L++   +R N+IPI+ DA  P +Y  +V  VDVI+ DVAQP+QA IL  NA +FLK GG+ +I+IKA  ID T   + +F+ + + L+   FK  ++V
Sbjct:   25 IATKSIVKGKKVYDEKIIKIGDE-----EYRIWNPNKSKLAAAIIKGLKVMPIKRDSKILYLGASAGTTPSHVADIAD-KGIVYAIEYAPRIMRELLDACAERENIIPILGDANKPQEYANIVEKVDVIYEDVAQPNQAEILIKNAKWFLKKGGYGMIAIKARSIDVTKDPKEIFKEQKEILEAGGFKIVDEV 211          
BLAST of CN181559 vs. ExPASy Swiss-Prot
Match: FLPA_METM5 (Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=flpA PE=3 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 1.073e-40
Identity = 87/193 (45.08%), Postives = 125/193 (64.77%), Query Frame = 1
Query:   46 LVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGVRVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQV 624
            + TK+L+ G+ VY EK +   N     +EYR+WNP +SKL AA++ G+  + IK G +VLYLGA++GTT SHV+DI   N +VYA+EF+ R  R+ ++   +R N+IP++ DA  P  Y  +V  VDVIF DVAQP+QA IL  NA +FLK  G+ +ISIKA  +D T     +F  + K L +  F+  ++V
Sbjct:   25 IATKSLIPGKRVYGEKLVYSDN-----IEYRVWNPNKSKLGAAIINGLKKMPIKKGTKVLYLGASAGTTPSHVADIA-ENSLVYALEFAPRIMREFIDSCNERKNLIPVLGDANRPQDYSNIVEKVDVIFEDVAQPNQAEILVKNAKWFLKENGYAMISIKARSVDVTKNPREIFAEQKKILIEGGFEIVDEV 211          
BLAST of CN181559 vs. ExPASy Swiss-Prot
Match: FLPA_METWO (Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase OS=Methanobacterium wolfei GN=flpA PE=3 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 1.831e-40
Identity = 93/208 (44.71%), Postives = 126/208 (60.58%), Query Frame = 1
Query:    1 EGHEGVFIAKGKEDALVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGVRVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQV 624
            +G +GVFI +   D+LVT NL  G  VY EK I          EYR+W+P RSK+AAAVL G+    + P  RVLYLGA++GTT SH+SDIV   G VY VEFS R  R+L+ + + R N++P++EDA  P  Y  +V   D+++ DVAQPDQ  +   N   FLK  G+ +I +KA  ID T     +F+ E  KL+   F+  +QV
Sbjct:    6 KGMDGVFIMR---DSLVTVNLTPGVRVYGEKLIEWGGS-----EYRVWDPRRSKMAAAVLNGLRGFQLNPESRVLYLGASAGTTASHISDIV-TMGRVYCVEFSPRMMRELIEVCRVRGNMVPLLEDASRPLDYMRMVENADLVYCDVAQPDQTGLFIRNMDCFLKDDGYGLIMVKARSIDVTRSPRKIFREEAGKLRDSGFRIIDQV 204          
BLAST of CN181559 vs. ExPASy Swiss-Prot
Match: FLPA_METVO (Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase OS=Methanococcus voltae GN=flpA PE=3 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 1.831e-40
Identity = 87/186 (46.77%), Postives = 125/186 (67.20%), Query Frame = 1
Query:   52 TKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGVRVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFK 609
            TK+LV  + VY EK ++V+N      EYR+WNP +SKL A+++ G+  + IK G +VLYLGA++GTT SHV+D V  +  VYAVEF+ R  R+ +   + R N+ PI+ DA  P +Y  +V  VDVIF DVAQP+QA IL  NA +FLK GG+ +ISIKA  +D T     +F+++ + ++Q+ FK
Sbjct:   25 TKSLVPNKRVYGEKLVNVKN-----TEYRVWNPNKSKLGASIINGLKEMPIKKGSKVLYLGASAGTTPSHVAD-VAEDSPVYAVEFAPRIMREFIESCEGRKNLFPILGDANKPEEYANIVEKVDVIFEDVAQPNQAEILIKNAKWFLKKGGYGMISIKARSVDVTENPRVIFEAQKEIMEQNGFK 204          
BLAST of CN181559 vs. ExPASy Swiss-Prot
Match: FLPA_METMP (Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase OS=Methanococcus maripaludis GN=flpA PE=3 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 4.079e-40
Identity = 88/193 (45.60%), Postives = 125/193 (64.77%), Query Frame = 1
Query:   46 LVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGVRVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQV 624
            + TK+LV G+ VY EK +   +     +EYRIWNP +SKL AA++ G+  + IK G +VLYLGA++GTT SHV+DI   N +VYA+EF+ R  R+ ++   +R N+IP++ DA  P  Y  +V  VDVIF DVAQP+QA IL  NA +FLK  G+ +ISIKA  +D T     +F  + K L +  F+  ++V
Sbjct:   25 IATKSLVPGKRVYGEKLVYSDS-----IEYRIWNPNKSKLGAAIINGLKKMPIKKGEKVLYLGASAGTTPSHVADIA-ENSLVYALEFAPRIMREFIDSCNERKNLIPVLGDANRPQDYSNIVEKVDVIFEDVAQPNQAEILVKNAKWFLKENGYAMISIKARSVDVTKNPREIFAEQKKILIEGGFEIVDEV 211          
BLAST of CN181559 vs. ExPASy Swiss-Prot
Match: FLPA_METM6 (Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=flpA PE=3 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 4.079e-40
Identity = 87/193 (45.08%), Postives = 124/193 (64.25%), Query Frame = 1
Query:   46 LVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGVRVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQV 624
            + TK+LV G+ VY EK +   N     +EYR+WNP +SKL AA++ G+  + IK G +VLYLGA++GTT SHV+DI     +VYA+EF+ R  R+ ++   +R N+IP++ DA  P  Y  +V  VDVIF DVAQP+QA IL  NA +FLK  G+ +ISIKA  +D T     +F  + K L +  F+  ++V
Sbjct:   25 IATKSLVPGKRVYGEKLVYSDN-----IEYRVWNPNKSKLGAAIINGLKKMPIKKGTKVLYLGASAGTTPSHVADIA-ETSLVYALEFAPRIMREFIDSCNERKNLIPVLGDANRPQDYSNIVEKVDVIFEDVAQPNQAEILVKNAKWFLKENGYAMISIKARSVDVTKNPREIFAEQKKILIEGGFEIVDEV 211          
BLAST of CN181559 vs. ExPASy Swiss-Prot
Match: FLPA_METM7 (Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=flpA PE=3 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 5.327e-40
Identity = 86/193 (44.56%), Postives = 125/193 (64.77%), Query Frame = 1
Query:   46 LVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGVRVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQV 624
            + TK+LV G+ VY EK +   +     +EYR+WNP +SKL AA++ G+  + IK G +VLYLGA++GTT SHV+DI   N +VYA+EF+ R  R+ ++   +R N+IP++ DA  P  Y  +V  VDVIF DVAQP+QA IL  NA +FLK  G+ +ISIKA  +D T     +F  + K L +  F+  +++
Sbjct:   25 IATKSLVPGKRVYGEKLVYSDS-----IEYRVWNPNKSKLGAAIINGLKKMPIKKGTKVLYLGASAGTTPSHVADIA-ENSLVYALEFAPRIMREFIDSCNERKNLIPVLGDANRPQDYSNIVEKVDVIFEDVAQPNQAEILVKNARWFLKENGYAMISIKARSVDVTKNPREIFAEQKKILIEGGFEIVDEI 211          
BLAST of CN181559 vs. ExPASy Swiss-Prot
Match: FLPA_NANEQ (Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase OS=Nanoarchaeum equitans GN=flpA PE=3 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 1.550e-39
Identity = 88/205 (42.93%), Postives = 124/205 (60.49%), Query Frame = 1
Query:   10 EGVFIAKGKEDALVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGVRVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQV 624
            EGV+I   K   L+TKNLV G+ VY E+    + E     EYR W PFRSKLA+A+  G+     K G  VLYLG ASGTT SH+SDI+G  G+++ VEF+ R  R+L+ +AKKR N++PI+ DA  P  Y+ +V   DVI+ DVAQP Q  I   N  +F K      +++KA  ID T   + +F+   +KL++ + +  E +
Sbjct:   15 EGVYIGNNK--FLLTKNLVKGQKVYTERIFKSKGE-----EYREWIPFRSKLASAIKKGLKTWPFKKGTIVLYLGIASGTTASHISDIIGEEGIIFGVEFAPRVLRELMFVAKKRKNIVPILADANQPETYQHIVVQSDVIYQDVAQPHQVEIFLKNLRFFAKPNAIGFLAVKARSIDVTKDPKVIFREVERKLREAKLQLLESI 212          
BLAST of CN181559 vs. ExPASy Swiss-Prot
Match: FLPA_META3 (Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=flpA PE=3 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 2.644e-39
Identity = 88/193 (45.60%), Postives = 129/193 (66.84%), Query Frame = 1
Query:   46 LVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGVRVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQV 624
            + TK+LV  + +Y EK I+ ++     +EYRIWNP RSKL AA++ G+  + IK G +VLYLG ++GTT SHV+DI   N  VY+VEF+ R  R+ ++++K R N+IPI+ DA +P +Y  +V  VDVIF DVAQP QA IL  NA +FLK GG+ +ISIKA  +D     + +F+ + + L +  F+  ++V
Sbjct:   25 IATKSLVPSKRIYGEKLITGEDN----LEYRIWNPNRSKLGAAIVNGLKTMPIKKGSKVLYLGVSAGTTPSHVADIT-ENSPVYSVEFAPRIMREFLDVSKDRKNLIPILGDATNPVEYSNVVEEVDVIFEDVAQPKQAEILVNNAKWFLKEGGYGMISIKARSVDVLRNPKEIFEEQKQILIEGGFEIVDEV 212          
BLAST of CN181559 vs. ExPASy Swiss-Prot
Match: FLPA_SULAC (Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase OS=Sulfolobus acidocaldarius GN=flpA PE=3 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 4.509e-39
Identity = 88/187 (47.06%), Postives = 118/187 (63.10%), Query Frame = 1
Query:   46 LVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGVRVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQF 606
            L TKNL  G  VY E+ I         VEYR WN FRSKLA A++ G+    I  G ++LYLGAASGTT SH+SDIV   G VY+VEFS R  R+L+ +A+ R N+ PI+ DAR P  Y+ LV  VD+++ D+AQP++  I   NA +FLK  G+ +I+IK+  ID T     ++ +E KKL+   F
Sbjct:   27 LCTKNLSPGHNVYGERLIKYGG-----VEYREWNAFRSKLAGAIVKGLKYNPIVKGSKILYLGAASGTTPSHISDIVELQGKVYSVEFSPRVIRELLLVAQYRPNMFPILADARFPQYYKSLVENVDIVYVDIAQPNETEIAMYNARFFLKKNGYMMIAIKSRSIDVTKDPREIYNAEAKKLEDAGF 208          
The following BLAST results are available for this feature:
BLAST of CN181559 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 73
Match NameE-valueIdentityDescription
FLPA_METJA6.292e-4146.11Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase ... [more]
FLPA_METM51.073e-4045.08Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase ... [more]
FLPA_METWO1.831e-4044.71Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase ... [more]
FLPA_METVO1.831e-4046.77Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase ... [more]
FLPA_METMP4.079e-4045.60Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase ... [more]
FLPA_METM64.079e-4045.08Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase ... [more]
FLPA_METM75.327e-4044.56Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase ... [more]
FLPA_NANEQ1.550e-3942.93Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase ... [more]
FLPA_META32.644e-3945.60Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase ... [more]
FLPA_SULAC4.509e-3947.06Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001B24_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001B24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181559 ID=CN181559; Name=CN181559; organism=Citrus sinensis; type=EST; length=626bp
GAGGGACACGAAGGAGTGTTCATTGCCAAGGGCAAAGAAGACGCCCTTGT
CACTAAGAATCTCGTCGCCGGTGAGGCTGTCTACAATGAGAAGAGGATCT
CCGTCCAGAATGAAGATGGAACCAAAGTTGAGTATAGAATTTGGAATCCC
TTCCGTTCCAAATTAGCTGCAGCTGTTCTTGGTGGTGTTGATAATATTTG
GATTAAACCTGGTGTTAGGGTTCTATACCTTGGTGCTGCTTCCGGCACAA
CTGTCTCACATGTTTCGGACATTGTTGGCCCTAATGGAGTAGTTTATGCA
GTGGAATTTTCTCATAGAAGTGGTAGAGACTTGGTCAATATGGCAAAGAA
GAGAACCAATGTTATACCCATAATTGAAGATGCTAGACATCCTGCCAAGT
ACCGTATGTTGGTCGGTATGGTAGATGTAATATTTTCTGACGTTGCCCAA
CCGGATCAGGCGAGGATTTTAGCCCTGAATGCATCATATTTTCTCAAAGC
TGGAGGTCATTTTGTTATTTCTATCAAGGCAAACTGCATAGATTCCACTG
TTCCTGCTGAGGCAGTGTTCCAGAGTGAAGTTAAGAAGCTGCAACAGGAT
CAGTTCAAACCCTTTGAGCAAGTGAC
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