CN181559

Overview
NameCN181559
Unique NameCN181559
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length626
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2575 contig Csv1_Contig2575:261..887. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN181559 vs. ExPASy Swiss-Prot
Match: FLPA_HALWD (Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase OS=Haloquadratum walsbyi (strain DSM 16790) GN=flpA PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 4.240e-21
Identity = 69/177 (38.98%), Postives = 96/177 (54.24%), Query Frame = 1
Query:   70 GEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGVRVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGM-VDVIFSDVAQPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQ 597
            G  VY E R    + DG    +R+W+  RSKL A     ++   +  G  +LYLGAASGTTVSHV+D  GP    YA+EF+ R  RDL+ +A  R N+IP++ DAR P  Y  +V   ++ +  DVA   QA + AL    FL   G  ++ IKA   D     E VF + +  L++
Sbjct:   26 GTTVYGEPR----DTDG----WRLWDAGRSKLGAMFKLDIET-GLTGGESILYLGAASGTTVSHVADFAGPT---YAIEFAPRPVRDLLEVATTRPNLIPLLCDARQPETYAHVVETDIEYLIQDVATRGQATV-ALRNRQFLAPDGKLILMIKARSEDVLSDPEDVFDTIISTLRE 189          
BLAST of CN181559 vs. ExPASy Swiss-Prot
Match: FLPA_HALSA (Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase OS=Halobacterium salinarium GN=flpA PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 4.240e-21
Identity = 75/189 (39.68%), Postives = 100/189 (52.91%), Query Frame = 1
Query:   31 GKEDALVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGVRVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLV-GMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQ 594
            G ED ++      GE  Y E  +     DG    +R W+  RSKL A    G+D   +  G  VLYLGAA+GTTVSHV+D  GP    YAVEF+ R   DL+ +A  R  + P+++DAR P  Y  +V   VD I  DVA   QA + AL+   FL   G  V ++KA   D T    AVF+  + +L+
Sbjct:   13 GDEDGVLATR---GEPAYGEPVV-----DG----WRRWDAHRSKLGATFELGLDT-GLSGGDAVLYLGAANGTTVSHVADFAGP---TYAVEFAPRPVTDLLAVADSRERLFPLLKDARAPETYAHVVESGVDAIVQDVATRGQADV-ALSNRQFLADDGRLVAALKARSEDVTADPAAVFEDLLGRLR 184          
BLAST of CN181559 vs. ExPASy Swiss-Prot
Match: FLPA_HALS3 (Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=flpA PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 4.240e-21
Identity = 75/189 (39.68%), Postives = 100/189 (52.91%), Query Frame = 1
Query:   31 GKEDALVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGVRVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLV-GMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQ 594
            G ED ++      GE  Y E  +     DG    +R W+  RSKL A    G+D   +  G  VLYLGAA+GTTVSHV+D  GP    YAVEF+ R   DL+ +A  R  + P+++DAR P  Y  +V   VD I  DVA   QA + AL+   FL   G  V ++KA   D T    AVF+  + +L+
Sbjct:   13 GDEDGVLATR---GEPAYGEPVV-----DG----WRRWDAHRSKLGATFELGLDT-GLSGGDAVLYLGAANGTTVSHVADFAGP---TYAVEFAPRPVTDLLAVADSRERLFPLLKDARAPETYAHVVESGVDAIVQDVATRGQADV-ALSNRQFLADDGRLVAALKARSEDVTADPAAVFEDLLGRLR 184          
The following BLAST results are available for this feature:
BLAST of CN181559 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 73
Match NameE-valueIdentityDescription
FLPA_HALWD4.240e-2138.98Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase ... [more]
FLPA_HALSA4.240e-2139.68Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase ... [more]
FLPA_HALS34.240e-2139.68Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001B24_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001B24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181559 ID=CN181559; Name=CN181559; organism=Citrus sinensis; type=EST; length=626bp
GAGGGACACGAAGGAGTGTTCATTGCCAAGGGCAAAGAAGACGCCCTTGT
CACTAAGAATCTCGTCGCCGGTGAGGCTGTCTACAATGAGAAGAGGATCT
CCGTCCAGAATGAAGATGGAACCAAAGTTGAGTATAGAATTTGGAATCCC
TTCCGTTCCAAATTAGCTGCAGCTGTTCTTGGTGGTGTTGATAATATTTG
GATTAAACCTGGTGTTAGGGTTCTATACCTTGGTGCTGCTTCCGGCACAA
CTGTCTCACATGTTTCGGACATTGTTGGCCCTAATGGAGTAGTTTATGCA
GTGGAATTTTCTCATAGAAGTGGTAGAGACTTGGTCAATATGGCAAAGAA
GAGAACCAATGTTATACCCATAATTGAAGATGCTAGACATCCTGCCAAGT
ACCGTATGTTGGTCGGTATGGTAGATGTAATATTTTCTGACGTTGCCCAA
CCGGATCAGGCGAGGATTTTAGCCCTGAATGCATCATATTTTCTCAAAGC
TGGAGGTCATTTTGTTATTTCTATCAAGGCAAACTGCATAGATTCCACTG
TTCCTGCTGAGGCAGTGTTCCAGAGTGAAGTTAAGAAGCTGCAACAGGAT
CAGTTCAAACCCTTTGAGCAAGTGAC
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