CN181558

Overview
NameCN181558
Unique NameCN181558
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length619
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN181558 vs. ExPASy Swiss-Prot
Match: FBRL_ENCCU (rRNA 2'-O-methyltransferase fibrillarin OS=Encephalitozoon cuniculi GN=NOP1 PE=3 SV=1)

HSP 1 Score: 268.855 bits (686), Expect = 1.488e-71
Identity = 131/200 (65.50%), Postives = 166/200 (83.00%), Query Frame = -3
Query:    9 GVFIAKGKEDALVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGVRVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKP 608
            GV+I++GKED L+T+NLV G +VY EKR++V  E G KVEYR+WN +RSKLAA ++ G +NI ++PG +VLYLGA+SGTTVSHVSDIVG +GVVYAVEFS RSGRDL+NM+ KR N++PIIEDAR+P++YRMLV +VD IFSDV+QPDQ RI+ALNA YFLK GG   +SIKANC++S VPAE VF  EV  L+++  +P
Sbjct:   57 GVYISRGKEDLLLTRNLVPGVSVYGEKRVAVDLE-GMKVEYRVWNAYRSKLAAGIVCGAENIHMEPGSKVLYLGASSGTTVSHVSDIVGKDGVVYAVEFSERSGRDLINMSMKRPNIVPIIEDARYPSRYRMLVPIVDCIFSDVSQPDQTRIVALNAQYFLKEGGGVDVSIKANCVNSAVPAETVFADEVNILRKNSIRP 255          
BLAST of CN181558 vs. ExPASy Swiss-Prot
Match: FBRL_LEIMA (rRNA 2'-O-methyltransferase fibrillarin OS=Leishmania major PE=3 SV=1)

HSP 1 Score: 263.848 bits (673), Expect = 4.785e-70
Identity = 134/205 (65.37%), Postives = 162/205 (79.02%), Query Frame = -3
Query:    6 HEGVFIAKGKEDALVTKNLVAGEAVYNEKRISVQNEDG--TKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGVRVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPL 614
            H GVFI+K K D+L T N+V G +VY EKRI +    G   K EYR+WNP+RSKLA+A+  GV +I + PG +VLYLG A+GTTVSHVSD+VGP G+VYAVEFSHR GRDLV M+K+R  ++PI+EDAR+P KYRMLV MVD IF DVAQPDQARILALNA  FL+ GGH+VISIKANCIDST+ A  V  SE+ KL++D+ KPL
Sbjct:   67 HPGVFISKAKTDSLCTLNMVPGISVYGEKRIELGATQGGDDKKEYRLWNPYRSKLASAIYAGVSSIHMGPGSKVLYLGGATGTTVSHVSDLVGPEGMVYAVEFSHRVGRDLVEMSKRRP-IVPIVEDARYPMKYRMLVPMVDCIFMDVAQPDQARILALNAQAFLQNGGHYVISIKANCIDSTLEAPVVIASELNKLKKDKLKPL 270          
BLAST of CN181558 vs. ExPASy Swiss-Prot
Match: FBRL_GIALA (rRNA 2'-O-methyltransferase fibrillarin OS=Giardia lamblia PE=3 SV=1)

HSP 1 Score: 256.529 bits (654), Expect = 7.640e-68
Identity = 133/201 (66.17%), Postives = 159/201 (79.10%), Query Frame = -3
Query:   12 HEGVFIAKGKEDALVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGVRVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFK 614
            ++G+FI+ G+ D LVTK+L  G AVY EKRISV+  + +K+EYR WNPFRSKL AAV   V ++ IKPG +VLYLGAASGTTVSHVSDIVGP G VYAVEFS RSGRDL+ +AK RTNV PII DARHP KYRM+V  VD IFSDVAQPDQARI+A NA Y+LKA G  +ISIKA+ +DST+  EAVF  E++ L++  FK
Sbjct:  102 YDGIFISHGRGDVLVTKSLAPGVAVYGEKRISVEGTE-SKIEYREWNPFRSKLGAAVRLNVLDMPIKPGAKVLYLGAASGTTVSHVSDIVGPTGAVYAVEFSQRSGRDLLEVAKARTNVYPIIADARHPYKYRMIVPEVDCIFSDVAQPDQARIVAENARYYLKANGGMLISIKASSVDSTLKPEAVFAREIETLREHDFK 301          
BLAST of CN181558 vs. ExPASy Swiss-Prot
Match: FLPA_THEON (Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase OS=Thermococcus onnurineus (strain NA1) GN=flpA PE=3 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 1.956e-47
Identity = 103/192 (53.65%), Postives = 129/192 (67.19%), Query Frame = -3
Query:   30 VFIAKGKEDALVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGVRVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKL 605
            VFI +   + + TKNLV G+ VY E+ I  + E     EYR+WNP RSKL AA+L G+ +  IKPG  VLYLG ASGTT SHVSDIVG  G V+ VEFS R  R+LV + ++R N++PI+ DA  P  YR LV  VDVIF DVAQP QA+IL  NA  FLK+GG+ +IS+K+  ID T   E VF+   K+L
Sbjct:   13 VFIDEDGSEKIATKNLVPGQKVYGERLIKFEGE-----EYRVWNPRRSKLGAAILNGLKHFPIKPGSTVLYLGVASGTTASHVSDIVGWEGKVFGVEFSPRVLRELVPIVEERRNIVPILGDATKPEGYRALVPKVDVIFEDVAQPTQAKILIDNAKVFLKSGGYGMISVKSRSIDVTKEPEQVFKEVEKEL 199          
BLAST of CN181558 vs. ExPASy Swiss-Prot
Match: FLPA_PYRAE (Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase OS=Pyrobaculum aerophilum GN=flpA PE=3 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 4.358e-47
Identity = 102/204 (50.00%), Postives = 135/204 (66.18%), Query Frame = -3
Query:   15 HEGVFIAKGKE--DALVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGVRVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVN--MAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQF 614
            H GV++ K ++  + + TKNL  G  VY E+ I    +     EYR WNP+RSKLAAA+L G+  + IK G  +LYLGAASGTT SH+SDIVG NG++Y+VEFS R  R+ +   + + R NV+PI+ DAR P +Y   V  VDV++ DVAQP QA+ILA NA YFLK GGH ++ IKA  ID T PA   F+ E+  L++  F
Sbjct:   14 HYGVYVVKFEDGTERIATKNLTPGRRVYGERLIKWGGD-----EYREWNPYRSKLAAAILNGLKLVPIKEGTHILYLGAASGTTPSHISDIVGENGLIYSVEFSPRVFREFMEKLVDQGRRNVVPILGDARFPYQYAHYVKGVDVVYIDVAQPAQAKILADNADYFLKPGGHVMLVIKAMSIDVTAPATETFKQEINTLKERGF 212          
BLAST of CN181558 vs. ExPASy Swiss-Prot
Match: FLPA_PYRKO (Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase OS=Pyrococcus kodakaraensis GN=flpA PE=3 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 9.709e-47
Identity = 103/195 (52.82%), Postives = 130/195 (66.67%), Query Frame = -3
Query:   30 GVFIAKGKE--DALVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGVRVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKL 608
            GV+I    +  + + TKNLV G+ VY E+ +  + E     EYRIWNP RSKL AA+L G+ N  IKPG  VLYLG ASGTT SHVSDIVG  G V+ VEFS R  R+LV + ++R N++PI+ DA  P  YR LV  VDVIF DVAQP QA+IL  NA  +LK+GG+ +IS+K+  ID T   E VF+   K+L
Sbjct:   10 GVYIVIDDDGSEKIATKNLVPGQRVYGERVVKFEGE-----EYRIWNPTRSKLGAAILNGLKNFPIKPGSTVLYLGVASGTTASHVSDIVGWEGKVFGVEFSPRVLRELVPLVEERRNIVPILGDATKPEGYRALVPKVDVIFEDVAQPTQAKILIDNAKVYLKSGGYGMISVKSRSIDVTKEPEQVFKEVEKEL 199          
BLAST of CN181558 vs. ExPASy Swiss-Prot
Match: FLPA_THEGJ (Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=flpA PE=3 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 1.656e-46
Identity = 103/195 (52.82%), Postives = 130/195 (66.67%), Query Frame = -3
Query:   30 GVFIAKGKE--DALVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGVRVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKL 608
            GV+I    +  + + TKNLV G+ VY E+ I  + E     EYRIWNP RSKL AA+L G+ N  IKPG  VLYLG ASGTT SHVSDIVG  G ++ VEFS R  R+LV + ++R N++PI+ DA  P  YR LV  VDVIF DVAQP QA+IL  NA  FLK+GG+ +IS+K+  ID T   E VF+   ++L
Sbjct:   10 GVYIVIDDDGSEKIATKNLVPGQRVYGERVIKFEGE-----EYRIWNPSRSKLGAAILNGLKNFPIKPGSTVLYLGIASGTTASHVSDIVGWEGKIFGVEFSPRVLRELVPIVEERRNIVPILGDATKPEGYRALVPKVDVIFEDVAQPTQAKILIDNAKVFLKSGGYGMISVKSRSIDVTKEPEEVFKEVEREL 199          
BLAST of CN181558 vs. ExPASy Swiss-Prot
Match: FLPA_PYRIL (Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=flpA PE=3 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 1.656e-46
Identity = 102/207 (49.28%), Postives = 139/207 (67.15%), Query Frame = -3
Query:    6 HEGVFIAKGKE--DALVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGVRVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVN--MAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPL 614
            H GV++ K ++  + L TKNL  G+ VY E+ I  ++E     EYR WNP+RSKLAAA++ G+  I I+ G  +LYLGAASGTT SH+SDIVG  G++Y+VEFS R  R+ +   + + R NV+PI+ DAR P +Y   V  VDV++ DVAQP QA+ILA NA YFLK GG+ ++ IKA  ID T PA   F+ E+  L++  F+ L
Sbjct:   14 HFGVYVVKFEDGTERLATKNLTPGKRVYGERLIKWRDE-----EYREWNPYRSKLAAAIVNGIKFIPIQEGTHMLYLGAASGTTPSHISDIVGERGLIYSVEFSPRVFREFIEKLVDQGRRNVVPILGDARFPYQYAHYVKGVDVVYIDVAQPAQAKILADNADYFLKPGGYVMLVIKAMSIDVTAPATETFKQEINTLKERGFEIL 215          
BLAST of CN181558 vs. ExPASy Swiss-Prot
Match: FLPA_THESM (Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase OS=Thermococcus sibiricus (strain MM 739 / DSM 12597) GN=flpA PE=3 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 3.690e-46
Identity = 98/186 (52.69%), Postives = 127/186 (68.28%), Query Frame = -3
Query:   24 DALVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGVRVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQ 581
            + + TKNLV G+ VY E+ +  + E     EYRIWNP RSKLAAA+L  + N  IKPG  VLYLG ASGTT SHVSDI+G  G ++ +EFS R  R+LV + ++R N++PI+ DA  P +YR LV  VDVIF DVAQP QA+IL  NA  +LK+GG+ +ISIK+  ID T   E VF+   K+L +
Sbjct:   21 ERIATKNLVPGQKVYGERIVKWKGE-----EYRIWNPNRSKLAAAILNDLKNFPIKPGTTVLYLGIASGTTASHVSDIIGWEGKIFGIEFSPRVLRELVPLVEERRNIVPILGDATKPEEYRALVTKVDVIFEDVAQPTQAKILIDNAKAYLKSGGYGMISIKSRSIDVTKEPEEVFREVEKELSE 201          
BLAST of CN181558 vs. ExPASy Swiss-Prot
Match: FLPA_PYRFU (Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase OS=Pyrococcus furiosus GN=flpA PE=1 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 4.819e-46
Identity = 100/194 (51.55%), Postives = 128/194 (65.98%), Query Frame = -3
Query:   24 VFIAKGKEDALVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGVRVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQ 605
            V I     + + TKNLV G+ VY E+ I  + E     EYRIWNP RSKL AA++ G+ N  IKPG  VLYLG ASGTT SHVSDIVG  G +Y +EFS R  R+LV + ++R N+IPI+ DA  P +YR LV  VDVIF DVAQP QA+IL  NA  +LK GG+ +I++K+  ID T   E VF+   ++L +
Sbjct:   14 VVIDDDGSEKIATKNLVPGQRVYGERVIKWEGE-----EYRIWNPHRSKLGAAIVNGLKNFPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIYGIEFSPRVLRELVPIVEERRNIIPILGDATKPEEYRALVTKVDVIFEDVAQPTQAKILIDNAKAYLKRGGYGMIAVKSRSIDVTKEPEQVFKEVERELSE 202          
The following BLAST results are available for this feature:
BLAST of CN181558 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 73
Match NameE-valueIdentityDescription
FBRL_ENCCU1.488e-7165.50rRNA 2'-O-methyltransferase fibrillarin OS=Encepha... [more]
FBRL_LEIMA4.785e-7065.37rRNA 2'-O-methyltransferase fibrillarin OS=Leishma... [more]
FBRL_GIALA7.640e-6866.17rRNA 2'-O-methyltransferase fibrillarin OS=Giardia... [more]
FLPA_THEON1.956e-4753.65Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase ... [more]
FLPA_PYRAE4.358e-4750.00Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase ... [more]
FLPA_PYRKO9.709e-4752.82Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase ... [more]
FLPA_THEGJ1.656e-4652.82Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase ... [more]
FLPA_PYRIL1.656e-4649.28Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase ... [more]
FLPA_THESM3.690e-4652.69Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase ... [more]
FLPA_PYRFU4.819e-4651.55Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001B24_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001B24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181558 ID=CN181558; Name=CN181558; organism=Citrus sinensis; type=EST; length=619bp
TTGCTCAAGGGTTTGAACTGATCCTGTTGCAGCTTCTTAACCTCACTCTG
GAACACTGCCTCAGCAGGAACAGTGGAATCTATGCAGTTTGCCTTGATAG
AAATAACAAAATGACCTCCAGCTTTGAGAAAATATGATGCATTCAGGGCT
AAAATCCTCGCCTGATCCGGTTGGGCAACGTCAGAAAATATTACATCTAC
CATACCGACCAACATACGGTACTTGGCAGGATGTCTAGCATCTTCAATTA
TGGGTATAACATTGGTTCTCTTCTTTGCCATATTGACCAAGTCTCTACCA
CTTCTATGAGAAAATTCCACTGCATAAACTACTCCATTAGGGCCAACAAT
GTCCGAAACATGTGAGACAGTTGTGCCGGAAGCAGCACCAAGGTATAGAA
CCCTAACACCAGGTTTAATCCAAATATTATCAACACCACCAAGAACAGCT
GCAGCTAATTTGGAACGGAAGGGATTCCAAATTCTATACTCAACTTTGGT
TCCATCTTCATTCTGGACGGAGATCCTCTTCTCATTGTAGACAGCCTCAC
CGGCGACGAGATTCTTAGTGACAAGGGCGTCTTCTTTGCCCTTGGCAATG
AACACTCCTTCGTGTCCCT
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