CN181558

Overview
NameCN181558
Unique NameCN181558
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length619
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN181558 vs. ExPASy Swiss-Prot
Match: FLPA_SULIK (Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase OS=Sulfolobus islandicus (strain M.16.4 / Kamchatka #3) GN=flpA PE=3 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 7.693e-44
Identity = 91/190 (47.89%), Postives = 127/190 (66.84%), Query Frame = -3
Query:    6 LVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGVRVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPL 575
            L T+NLV+G  VY E+ I  +      VEYR WN FRSKLA A+L G+    I+ G +VLYLGAASGTT+SHVSDI+  NG  Y VEFS R  R+L+ +A++R N+ P++ DAR P  Y+ +V  VDV++ D+AQPDQ  I   NA +FLK  G+ ++ IKA  ID T   + ++++EV+KL+   F+ +
Sbjct:   27 LCTRNLVSGFNVYGERLIKYEG-----VEYREWNAFRSKLAGAILKGLKTNPIRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRRPNIFPLLADARFPQSYKSVVENVDVLYVDIAQPDQTDIAIYNARFFLKVNGYMLLVIKARSIDVTKDPKEIYKAEVEKLENSNFETI 211          
BLAST of CN181558 vs. ExPASy Swiss-Prot
Match: FLPA_SULIA (Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase OS=Sulfolobus islandicus (strain M.16.27) GN=flpA PE=3 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 7.693e-44
Identity = 91/190 (47.89%), Postives = 127/190 (66.84%), Query Frame = -3
Query:    6 LVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGVRVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPL 575
            L T+NLV+G  VY E+ I  +      VEYR WN FRSKLA A+L G+    I+ G +VLYLGAASGTT+SHVSDI+  NG  Y VEFS R  R+L+ +A++R N+ P++ DAR P  Y+ +V  VDV++ D+AQPDQ  I   NA +FLK  G+ ++ IKA  ID T   + ++++EV+KL+   F+ +
Sbjct:   27 LCTRNLVSGFNVYGERLIKYEG-----VEYREWNAFRSKLAGAILKGLKTNPIRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRRPNIFPLLADARFPQSYKSVVENVDVLYVDIAQPDQTDIAIYNARFFLKVNGYMLLVIKARSIDVTKDPKEIYKAEVEKLENSNFETI 211          
BLAST of CN181558 vs. ExPASy Swiss-Prot
Match: FLPA_METMA (Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase OS=Methanosarcina mazei GN=flpA PE=3 SV=2)

HSP 1 Score: 176.792 bits (447), Expect = 7.693e-44
Identity = 104/201 (51.74%), Postives = 130/201 (64.68%), Query Frame = -3
Query:    9 EGVFIAKGKEDALVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGVRVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKP 611
            EG+F     +  L T NL  G+ VY EK ISV+ +     EYR W+P RSKL A VL   D I +K   +VLYLGAASGTTVSHVSDIV   G VY+VEF+ RS RD + +A +R N+ PI+ DA  P  Y  +V  VDVIF DVAQP+QA I A NA  FLK  G+ ++SIKA  ID+    + +F+ EVKKL+Q  F+P
Sbjct:    9 EGIFEVTKDKKQLSTLNLDPGKVVYGEKLISVEGD-----EYRTWDPRRSKLGAMVLKKFD-IPLKRNSKVLYLGAASGTTVSHVSDIVS-EGAVYSVEFAPRSMRDFIGLASRRKNIFPILADAGKPDSYAHIVEPVDVIFQDVAQPNQAEIAARNAVRFLKKDGYLLLSIKARSIDTAASPKEIFKEEVKKLEQ-AFEP 201          
BLAST of CN181558 vs. ExPASy Swiss-Prot
Match: FLPA_THENV (Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase OS=Thermoproteus neutrophilus (strain DSM 2338 / JCM 9278 / V24Sta) GN=flpA PE=3 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 2.238e-43
Identity = 98/207 (47.34%), Postives = 133/207 (64.25%), Query Frame = -3
Query:    6 HEGVFIAKGKE--DALVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGVRVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVN--MAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPL 614
            H GV+  K ++  + L T+NL  G+ VY E+ +          EYR WNP+RSKLAAA+  G+  + I+ G  +LYLGAASGTT SH+SDIVG  G++Y+VEFS R  R+ +   + + R NV+PI+ DAR P +Y   V  VDV + DVAQP QA+ILA NA YFLK GG+ ++ IKA  ID T PA   F+ E+  L++  F+ L
Sbjct:   14 HFGVYALKFEDGSERLATRNLTPGKRVYGERLVKWGG-----AEYREWNPYRSKLAAAIANGIKFVPIQEGTHILYLGAASGTTPSHMSDIVGERGLIYSVEFSPRVFREFMEKLVDQGRRNVVPILGDARFPYQYAHYVKGVDVAYIDVAQPAQAKILADNADYFLKPGGYVMLVIKAMSIDVTAPATETFKQEINTLKERGFEIL 215          
BLAST of CN181558 vs. ExPASy Swiss-Prot
Match: FLPA_SULSO (Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase OS=Sulfolobus solfataricus GN=flpA PE=1 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 1.111e-42
Identity = 90/190 (47.37%), Postives = 124/190 (65.26%), Query Frame = -3
Query:    6 LVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGVRVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPL 575
            L T+NLV    VY E+ I  +      VEYR WN FRSKLA A+L G+    I+ G +VLYLGAASGTT+SHVSDI+  NG  Y VEFS R  R+L+ +A++R N+ P++ DAR P  Y+ +V  VDV++ D+AQPDQ  I   NA +FLK  G  ++ IKA  ID T   + ++++EV+KL+   F+ +
Sbjct:   27 LCTRNLVPNFNVYGERLIKYEG-----VEYREWNAFRSKLAGAILKGLKTNPIRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRRPNIFPLLADARFPQSYKSVVENVDVLYVDIAQPDQTDIAIYNAKFFLKVNGDMLLVIKARSIDVTKDPKEIYKTEVEKLENSNFETI 211          
BLAST of CN181558 vs. ExPASy Swiss-Prot
Match: FLPA_METAC (Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase OS=Methanosarcina acetivorans GN=flpA PE=3 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 3.232e-42
Identity = 100/201 (49.75%), Postives = 127/201 (63.18%), Query Frame = -3
Query:    9 EGVFIAKGKEDALVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGVRVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKP 611
            EG+F     +  L T NL  G+ VY EK ISV+       EYR W+P RSKL A VL    NI +    +VLYLGAASGTTVSHVSDI    G VY+VEF+ RS RD + +A +R N+ PI+ DA  P  Y  +V  VD+IF DVAQP+QA I A NA+ FL   G+ ++SIKA  ID+    + +F+ EVKKL+Q  F+P
Sbjct:    9 EGIFEIMKDKRQLATLNLDPGKVVYGEKLISVEG-----AEYRTWDPRRSKLGAMVLKKF-NIPLSKDSKVLYLGAASGTTVSHVSDIAS-EGAVYSVEFASRSMRDFIRLASRRKNIFPILADAGKPDSYAHIVEPVDLIFQDVAQPNQAEIAARNAARFLNKNGYLLLSIKARSIDTAASPKEIFKEEVKKLEQ-AFEP 201          
BLAST of CN181558 vs. ExPASy Swiss-Prot
Match: FLPA_SULTO (Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase OS=Sulfolobus tokodaii GN=flpA PE=3 SV=2)

HSP 1 Score: 170.244 bits (430), Expect = 7.201e-42
Identity = 93/187 (49.73%), Postives = 120/187 (64.17%), Query Frame = -3
Query:   15 LVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGVRVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQF 575
            L TKNL  G +VY E+   V+      VEYR WN FRSKL  A+L G+    I  G +VLYLGAASGTT SHVSDIV   G VY VEFS R  R+ + +A+ R N+ PI+ DAR P  YR LV  VDV++ D+AQPD+  I   NA +FLK GG+ +++IKA  ID T     +++ EV KL+++ F
Sbjct:   27 LCTKNLAPGFSVYGERLFKVEG-----VEYREWNAFRSKLGGAILKGLKQNPIVKGTKVLYLGAASGTTPSHVSDIVELEGKVYGVEFSPRVVREFLLVAQHRPNLFPILADARFPQYYRTLVEDVDVLYVDIAQPDETDIAIYNAKFFLKNGGYMMMAIKARSIDVTKEPTEIYEMEVNKLKENNF 208          
BLAST of CN181558 vs. ExPASy Swiss-Prot
Match: FLPA_METKA (Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase OS=Methanopyrus kandleri GN=flpA PE=3 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 7.201e-42
Identity = 88/188 (46.81%), Postives = 124/188 (65.96%), Query Frame = -3
Query:    6 TKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGVRVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPL 569
            T+NLV G  VY E+ +    +     EYR+W P RSKLAA ++ G++    + G +VLYLGAA+GTT SHVSDI+  +GV Y VEF+ R  ++L+ + +KR N+IPI+ DA  P  Y  LV  VDVI+ D+AQP QA ++A NA  FL+ GG+ +++IKA  ID T   E VF+ E +KL++  F+ L
Sbjct:   29 TENLVPGHQVYGERLVEYDGK-----EYRVWEPRRSKLAAMIMNGMEYFPFEEGSKVLYLGAAAGTTPSHVSDIIKESGVEYCVEFASRMMQELIPVCEKRPNMIPILGDATKPHGYAPLVEQVDVIYQDIAQPKQAEVVADNAEAFLRPGGYVIVAIKARSIDVTKEPEEVFEDEERKLEERGFEVL 211          
BLAST of CN181558 vs. ExPASy Swiss-Prot
Match: FLPA_STAMF (Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=flpA PE=3 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 4.667e-41
Identity = 92/201 (45.77%), Postives = 130/201 (64.68%), Query Frame = -3
Query:   12 GVFIAKGKEDA--LVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGVRVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFK 608
            GV+I + ++ +  L TKNLV G  VY E+      E     EYR WN +RSKLA A+  G+    I+ G  +LYLG A+GTT SH+SDIVGP G +++VEF+ R  R+ V +A  R N+ PI+ DAR P +YR LV MVD I++D+AQP+QA I+A NA YFLK  G+ +++IKA  ID T     +++ E+  L++  F+
Sbjct:   15 GVYIVELEDGSVKLATKNLVPGHRVYGERLYRWGGE-----EYREWNLYRSKLAGALANGLAEQPIREGHSILYLGVATGTTASHISDIVGPTGRIFSVEFAPRVMREFVLVADIRKNLYPILGDARKPKEYRHLVEMVDGIYADIAQPEQAAIVADNADYFLKDNGYLLLAIKARSIDVTKEPSEIYRREINTLKERGFE 210          
BLAST of CN181558 vs. ExPASy Swiss-Prot
Match: FLPA_METVS (Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=flpA PE=3 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 1.040e-40
Identity = 91/187 (48.66%), Postives = 123/187 (65.78%), Query Frame = -3
Query:   15 LVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGVRVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQF 575
            + TK+L  G+ VY EK I  +N+     EYRIWNP +SKL AA++ G+  + IK G +VLYLGA++GTT SHVSDI   + +VYAVEF+ R  R+ ++   +R N+IPI+ DA  P +Y  +VG VDVIF DVAQP+QA IL  NA +FL   G+ +ISIKA  ID T   + +F  + K L +  F
Sbjct:   25 IATKSLAPGKRVYGEKLIYSENK-----EYRIWNPNKSKLGAAIINGLKKMPIKKGTKVLYLGASAGTTPSHVSDI-SEDTIVYAVEFAPRIMREFIDSCNERINLIPILGDANRPFEYSNIVGKVDVIFEDVAQPNQAEILVKNAKWFLNKDGYAMISIKARSIDVTKNPKEIFLEQKKILIEGGF 205          
The following BLAST results are available for this feature:
BLAST of CN181558 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 73
Match NameE-valueIdentityDescription
FLPA_SULIK7.693e-4447.89Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase ... [more]
FLPA_SULIA7.693e-4447.89Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase ... [more]
FLPA_METMA7.693e-4451.74Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase ... [more]
FLPA_THENV2.238e-4347.34Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase ... [more]
FLPA_SULSO1.111e-4247.37Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase ... [more]
FLPA_METAC3.232e-4249.75Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase ... [more]
FLPA_SULTO7.201e-4249.73Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase ... [more]
FLPA_METKA7.201e-4246.81Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase ... [more]
FLPA_STAMF4.667e-4145.77Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase ... [more]
FLPA_METVS1.040e-4048.66Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001B24_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001B24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181558 ID=CN181558; Name=CN181558; organism=Citrus sinensis; type=EST; length=619bp
TTGCTCAAGGGTTTGAACTGATCCTGTTGCAGCTTCTTAACCTCACTCTG
GAACACTGCCTCAGCAGGAACAGTGGAATCTATGCAGTTTGCCTTGATAG
AAATAACAAAATGACCTCCAGCTTTGAGAAAATATGATGCATTCAGGGCT
AAAATCCTCGCCTGATCCGGTTGGGCAACGTCAGAAAATATTACATCTAC
CATACCGACCAACATACGGTACTTGGCAGGATGTCTAGCATCTTCAATTA
TGGGTATAACATTGGTTCTCTTCTTTGCCATATTGACCAAGTCTCTACCA
CTTCTATGAGAAAATTCCACTGCATAAACTACTCCATTAGGGCCAACAAT
GTCCGAAACATGTGAGACAGTTGTGCCGGAAGCAGCACCAAGGTATAGAA
CCCTAACACCAGGTTTAATCCAAATATTATCAACACCACCAAGAACAGCT
GCAGCTAATTTGGAACGGAAGGGATTCCAAATTCTATACTCAACTTTGGT
TCCATCTTCATTCTGGACGGAGATCCTCTTCTCATTGTAGACAGCCTCAC
CGGCGACGAGATTCTTAGTGACAAGGGCGTCTTCTTTGCCCTTGGCAATG
AACACTCCTTCGTGTCCCT
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