CN181555

Overview
NameCN181555
Unique NameCN181555
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length637
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN181555 vs. ExPASy Swiss-Prot
Match: RUVB1_ASHGO (RuvB-like helicase 1 OS=Ashbya gossypii GN=RVB1 PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 6.363e-28
Identity = 73/185 (39.46%), Postives = 104/185 (56.22%), Query Frame = 2
Query:   95 RIGAHSHIRGLGLDSSLEARDVSEGMVGQLPARKAAGVILQMIKEGKIAGRAVLIAGQPGTGKTAIAMGMAKSLGLETPFAMISASEIFSLEMSKTEALMQAFRKAIGVRI---KXXXXXXXXXXXXXQIDRPATSXXXXXXXXXXXXXXEMET-VYDLGGKMIEALGKEKVQSGDVIAIDKVSG 637
            R  AH+HI+GLGLD    A+ V  G VGQ+ AR+A GVI+ +IK  +++GRA+L+AG P TGKTA+A+ + + LG + PF  +  SE+FS+E+ KTE LM+ FR+AIG+RI   K             + + P                    T    L   + E++ +EKV  GDVI I+  SG
Sbjct:   19 RTAAHTHIKGLGLDEFGAAKQVEGGFVGQVEAREACGVIVDLIKAKRMSGRAILLAGGPSTGKTALALAITQELGPKVPFCPLVGSELFSVEVKKTETLMENFRRAIGLRIKEVKEVYEGEVTELTPEEAENPLGGYGKTISHVIVGLKSAKGTKTLRLDPTIYESIQREKVSVGDVIYIESNSG 203          
BLAST of CN181555 vs. ExPASy Swiss-Prot
Match: RUVB1_CANAL (RuvB-like helicase 1 OS=Candida albicans GN=RVB1 PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 4.125e-27
Identity = 62/129 (48.06%), Postives = 92/129 (71.32%), Query Frame = 2
Query:   44 RMAELKLSESRDLTRIERIGAHSHIRGLGLDSSLEARDVSEGMVGQLPARKAAGVILQMIKEGKIAGRAVLIAGQPGTGKTAIAMGMAKSLGLETPFAMISASEIFSLEMSKTEALMQAFRKAIGVRIK 430
            ++ E+K ++S   +R  R  AH+HI+GLGL+    A+ +  G VGQ  AR+A G+I+ +IK  K++G+AVLIAG P TGKTA+A+ +++ LG + PF  I  SE++S E+ KT ALM+ FR+AIG+RIK
Sbjct:    3 QITEVKENQS---SRESRTAAHTHIKGLGLNEQGIAKPIEGGFVGQNEAREACGIIVDLIKSKKMSGKAVLIAGPPATGKTALALAISQELGPKVPFCPIVGSELYSAEVKKTSALMENFRRAIGLRIK 128          
BLAST of CN181555 vs. ExPASy Swiss-Prot
Match: RUVB1_GIBZE (RuvB-like helicase 1 OS=Gibberella zeae GN=RVB1 PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 5.387e-27
Identity = 73/198 (36.87%), Postives = 110/198 (55.56%), Query Frame = 2
Query:   56 LKLSESRDLTRIERIGAHSHIRGLGLDSSLEARDVSEGMVGQLPARKAAGVILQMIKEGKIAGRAVLIAGQPGTGKTAIAMGMAKSLGLETPFAMISASEIFSLEMSKTEALMQAFRKAIGVRI---KXXXXXXXXXXXXXQIDRPATS-XXXXXXXXXXXXXXEMETVYDLGGKMIEALGKEKVQSGDVIAIDKVSG 637
            +++SE +   R  R  AH+HI+GLGL S   A   + G VGQ  AR++ GV++ +I+  K+AGR VL+AG PGTGKTA+A+ +++ LG + PF  I  SEI+S E+ KTE LM+ FR+AIG+++   K             + + P                  + +    L   + EA+ KE+V  GDVI I+  +G
Sbjct:    2 VQISEVKGNKRDNRTAAHTHIKGLGLKSDGYAEKQAAGFVGQAAARESCGVVVDLIRAQKMAGRGVLLAGGPGTGKTALALAISQELGTKIPFCPIVGSEIYSAEVKKTEMLMENFRRAIGLKVRETKEVYEGEVTELTPEEAENPLGGYGKTISTLLIGLKSAKGQKKLRLDPSIYEAIQKERVTVGDVIYIEANTG 199          
BLAST of CN181555 vs. ExPASy Swiss-Prot
Match: RUVB1_USTMA (RuvB-like helicase 1 OS=Ustilago maydis GN=RVB1 PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 3.492e-26
Identity = 70/195 (35.90%), Postives = 107/195 (54.87%), Query Frame = 2
Query:   65 SESRDLTRIERIGAHSHIRGLGLDSSLEARDVSEGMVGQLPARKAAGVILQMIKEGKIAGRAVLIAGQPGTGKTAIAMGMAKSLGLETPFAMISASEIFSLEMSKTEALMQAFRKAIGVRI---KXXXXXXXXXXXXXQIDRPATSXXXXXXXXXXXXXXEMET-VYDLGGKMIEALGKEKVQSGDVIAIDKVSG 637
            S +   +R  RI  HSHI+GLGL     A   ++G VGQ  AR+A G++L +I+  K AG+A+L+AG PGTGKTA+A+ +++ LG + PF  +  SE++S E+ KTE LM+ FR+AIG+R+   K             + + P +                  T    L   + E++ KE++  GDVI I+  +G
Sbjct:   21 SSTSGASREARIATHSHIKGLGLSDDGTALPSAQGFVGQKAAREACGLVLDLIRMKKFAGKALLLAGGPGTGKTALALAVSQELGHKVPFCPMVGSEVYSSEVKKTEVLMENFRRAIGLRVRETKEVYEGEITELTPTEAENPLSGYGKTIAHVVIALKTVKGTKQLRLDPSIYESIMKERISVGDVIYIEANTG 215          
BLAST of CN181555 vs. ExPASy Swiss-Prot
Match: RUVB1_SCHPO (RuvB-like helicase 1 OS=Schizosaccharomyces pombe GN=rvb1 PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 4.560e-26
Identity = 72/199 (36.18%), Postives = 106/199 (53.27%), Query Frame = 2
Query:   56 LKLSESRDLTRIERIGAHSHIRGLGLDSSLEARDVSEGMVGQLPARKAAGVILQMIKEGKIAGRAVLIAGQPGTGKTAIAMGMAKSLGLETPFAMISASEIFSLEMSKTEALMQAFRKAIGVRIKXXXXXXXXXXXXXQIDRPATSXXXXXXXXXXXXXXEMET-----VYDLGGKMIEALGKEKVQSGDVIAIDKVSG 637
            +++SE +   R  RI  HSHI+GLGL        V  G +GQ  AR+A G+I  +IK  K  G+ VL AG  GTGKTA+A+ +A+ LG + PF  +  SE++S E+ KTEALM+ FR+AIG+R+K              +   A +               ++T        L   + E+L +E+V +GDVI I+  +G
Sbjct:    2 VQISEVKGNGRDNRITTHSHIKGLGLKEDGTCESVGGGFIGQEKAREACGIITDLIKSKKFGGKGVLFAGGAGTGKTALALAIAQELGPKVPFCPMVGSEVYSSEIKKTEALMENFRRAIGLRVK-ETKEVYEGEVTEMVPEEAENPLGGYGKTISHVLLGLKTHKGTKQLKLDPSIYESLQREQVSTGDVIYIEANTG 199          
BLAST of CN181555 vs. ExPASy Swiss-Prot
Match: RUVB1_CRYNE (RuvB-like helicase 1 OS=Cryptococcus neoformans GN=RVB1 PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.263e-25
Identity = 56/115 (48.70%), Postives = 80/115 (69.57%), Query Frame = 2
Query:   86 RIERIGAHSHIRGLGLDSSLEARDVSEGMVGQLPARKAAGVILQMIKEGKIAGRAVLIAGQPGTGKTAIAMGMAKSLGLETPFAMISASEIFSLEMSKTEALMQAFRKAIGVRIK 430
            R +RI  HSHI+GLGL     A   S+G +GQ+ AR+A G+ L ++K GK +GR +L+ G PGTGKTA+A+ +++ LG + PF  +  SE++S E+ KTE L   FR+AIG+RIK
Sbjct:   28 REQRIATHSHIKGLGLADDGTAMSSSQGFIGQILAREALGLHLSLLKGGKYSGRPLLLVGPPGTGKTALALALSQELGSKVPFCAMVGSEVYSGEVKKTEVLGSCFRRAIGLRIK 142          
BLAST of CN181555 vs. ExPASy Swiss-Prot
Match: RUVB1_ENCCU (RuvB-like protein 1 OS=Encephalitozoon cuniculi GN=RVB1 PE=1 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 2.502e-24
Identity = 64/190 (33.68%), Postives = 108/190 (56.84%), Query Frame = 2
Query:   80 LTRIERIGAHSHIRGLGLDSSLEARDVSEGMVGQLPARKAAGVILQMIKEGKIAGRAVLIAGQPGTGKTAIAMGMAKSLGLETPFAMISASEIFSLEMSKTEALMQAFRKAIGVRIKXXXXXXXXXXXXXQI---DRPATSXXXXXXXXXXXXXXEMET-VYDLGGKMIEALGKEKVQSGDVIAIDKVSG 637
            + +   I  HSH+R LGLD      +  + ++GQ  AR+AAG+I++M++  +++GRAVLI+G  G+GKTA+A+G+++ LG  TPF  +S SE++S E+ KTE L +A R++I VR++             +I   + P +S                E+    L   + E + K+++ +GDV+ I+  SG
Sbjct:    1 MVKSSNIAIHSHVRSLGLDDCGNPVEKPDAVIGQENAREAAGLIVEMVRTKRMSGRAVLISGPVGSGKTALAVGISEELGAGTPFTSMSGSEVYSNEVKKTEVLEEALRRSILVRMRELKDVYEGEVVELRIVDEENPLSSYPKRIKEMFVILKTSKESKKLKLAPSLYEQIDKQRIVNGDVVYIEVNSG 190          
The following BLAST results are available for this feature:
BLAST of CN181555 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 47
Match NameE-valueIdentityDescription
RUVB1_ASHGO6.363e-2839.46RuvB-like helicase 1 OS=Ashbya gossypii GN=RVB1 PE... [more]
RUVB1_CANAL4.125e-2748.06RuvB-like helicase 1 OS=Candida albicans GN=RVB1 P... [more]
RUVB1_GIBZE5.387e-2736.87RuvB-like helicase 1 OS=Gibberella zeae GN=RVB1 PE... [more]
RUVB1_USTMA3.492e-2635.90RuvB-like helicase 1 OS=Ustilago maydis GN=RVB1 PE... [more]
RUVB1_SCHPO4.560e-2636.18RuvB-like helicase 1 OS=Schizosaccharomyces pombe ... [more]
RUVB1_CRYNE2.263e-2548.70RuvB-like helicase 1 OS=Cryptococcus neoformans GN... [more]
RUVB1_ENCCU2.502e-2433.68RuvB-like protein 1 OS=Encephalitozoon cuniculi GN... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001B22_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001B22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181555 ID=CN181555; Name=CN181555; organism=Citrus sinensis; type=EST; length=637bp
GAGGAAACCCTAAACCACACGCTATCAAACCACAACCATCACCAGAATGG
CGGAGCTAAAGCTATCGGAAAGCCGAGACCTAACACGAATCGAGCGTATA
GGTGCACACTCCCATATTCGTGGTCTTGGTCTAGACTCATCCCTAGAAGC
GCGCGATGTCTCTGAAGGCATGGTGGGTCAGCTCCCCGCCCGTAAGGCCG
CCGGCGTCATACTCCAAATGATCAAAGAAGGAAAAATCGCGGGTCGGGCC
GTCCTCATTGCGGGGCAACCCGGCACTGGTAAAACCGCCATAGCAATGGG
CATGGCGAAGTCTCTCGGCCTTGAAACTCCCTTTGCCATGATCTCCGCCT
CCGAAATTTTCTCCCTCGAAATGTCGAAAACCGAAGCGCTAATGCAAGCC
TTTAGAAAGGCTATTGGCGTGAGAATCAAAGAAGAAGCCGAAGTTATTGA
AGGAGAAGTTGTTGAGGTGCAGATTGACCGCCCTGCAACATCTGGGGCGG
CAGCGAAGACAGGGAAGCTGACACTGAAAACTACGGAGATGGAGACCGTT
TATGACTTGGGAGGGAAGATGATTGAGGCATTGGGTAAGGAGAAGGTGCA
GAGTGGAGATGTGATTGCTATTGATAAGGTTTCGGGG
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