CN181554

Overview
NameCN181554
Unique NameCN181554
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length802
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11607 contig Csv1_Contig11607:247..1048. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN181554 vs. ExPASy Swiss-Prot
Match: RUVB2_DROPS (RuvB-like helicase 2 OS=Drosophila pseudoobscura pseudoobscura GN=rept PE=3 SV=1)

HSP 1 Score: 222.246 bits (565), Expect = 2.560e-57
Identity = 108/177 (61.02%), Postives = 137/177 (77.40%), Query Frame = -3
Query:  261 KKGKAEIVPGVLFIDEVHMLDVECFSFLNRALENEMAPILVVATNRGITRIRGTNYKSAHGIPMDLLDRLLIISTKPYTRDEIRKILDIRCQEEDVEMAEDAKQLLTRVGEGTSLRYAIHLITAAALASQKRKGKVVEVQDIDRVYRLFLDVQRSTQYLMEYQSQYINEVTIEADED 791
            ++GKAEI PGVLFIDEVHMLD+ECFS+LNRALE++MAP++V+ATNRGITRIRGTNY+S HGIP+DLLDR++II T PY+  E+++IL IRC+EED  M  DA  +LTR+   TSLRYAI LIT A L  ++RK   V  +D+ +VY LFLD  RS++ L EYQ  Y+     E +ED
Sbjct:  281 EEGKAEINPGVLFIDEVHMLDIECFSYLNRALESDMAPVVVMATNRGITRIRGTNYRSPHGIPIDLLDRMIIIRTVPYSEKEVKEILKIRCEEEDCVMHPDALTILTRIATDTSLRYAIQLITTANLVCRRRKATEVNTEDVKKVYSLFLDENRSSKILKEYQDDYMFSEITEKEED 457          
BLAST of CN181554 vs. ExPASy Swiss-Prot
Match: RUVB2_KLULA (RuvB-like helicase 2 OS=Kluyveromyces lactis GN=RVB2 PE=3 SV=1)

HSP 1 Score: 217.624 bits (553), Expect = 6.306e-56
Identity = 106/182 (58.24%), Postives = 143/182 (78.57%), Query Frame = -3
Query:  261 KKGKAEIVPGVLFIDEVHMLDVECFSFLNRALENEMAPILVVATNRGITRIRGTNYKSAHGIPMDLLDRLLIISTKPYTRDEIRKILDIRCQEEDVEMAEDAKQLLTRVGEGTSLRYAIHLITAAALASQKRKGKVVEVQDIDRVYRLFLDVQRSTQYLMEYQSQYINE-----VTIEADED 791
            ++GKAEIVPGVLFIDEVHMLD+ECFSF+NRALE+E API+++ATNRGI++ RGTNYKS HG+P+DLLDR +II+TK Y   EI+ IL IR  EE+VE++ +A  LLT +G  TSLRY+ +LI+ +   +QKRK   VEV+D++R Y LFLD  RS +++ E++SQYI++     ++I  DED
Sbjct:  280 EEGKAEIVPGVLFIDEVHMLDIECFSFINRALEDEFAPIVIMATNRGISKTRGTNYKSPHGLPLDLLDRSIIITTKNYDASEIKTILTIRSTEEEVELSPEALDLLTNIGSETSLRYSSNLISVSQQIAQKRKSNTVEVKDVERAYLLFLDSARSVKFVQEFESQYIDDKGQVNISIGKDED 461          
BLAST of CN181554 vs. ExPASy Swiss-Prot
Match: RUVB2_YEAST (RuvB-like protein 2 OS=Saccharomyces cerevisiae GN=RVB2 PE=1 SV=1)

HSP 1 Score: 217.238 bits (552), Expect = 8.235e-56
Identity = 104/169 (61.54%), Postives = 135/169 (79.88%), Query Frame = -3
Query:  285 KKGKAEIVPGVLFIDEVHMLDVECFSFLNRALENEMAPILVVATNRGITRIRGTNYKSAHGIPMDLLDRLLIISTKPYTRDEIRKILDIRCQEEDVEMAEDAKQLLTRVGEGTSLRYAIHLITAAALASQKRKGKVVEVQDIDRVYRLFLDVQRSTQYLMEYQSQYINE 791
            ++GKAEIVPGVLFIDEVHMLD+ECFSF+NRALE+E API+++ATNRG+++ RGTNYKS HG+P+DLLDR +II+TK Y   EI+ IL IR QEE+VE++ DA  LLT+ G  TSLRY+ +LI+ A   + KRK   VEV+D+ R Y LFLD  RS +Y+ E +SQYI++
Sbjct:  282 EEGKAEIVPGVLFIDEVHMLDIECFSFINRALEDEFAPIVMMATNRGVSKTRGTNYKSPHGLPLDLLDRSIIITTKSYNEQEIKTILSIRAQEEEVELSSDALDLLTKTGVETSLRYSSNLISVAQQIAMKRKNNTVEVEDVKRAYLLFLDSARSVKYVQENESQYIDD 450          
BLAST of CN181554 vs. ExPASy Swiss-Prot
Match: RUVB2_CANAL (RuvB-like helicase 2 OS=Candida albicans GN=RVB2 PE=3 SV=1)

HSP 1 Score: 217.238 bits (552), Expect = 8.235e-56
Identity = 109/183 (59.56%), Postives = 140/183 (76.50%), Query Frame = -3
Query:  252 KKGKAEIVPGVLFIDEVHMLDVECFSFLNRALENEMAPILVVATNRGITRIRGTNYKSAHGIPMDLLDRLLIISTKPYTRDEIRKILDIRCQEEDVEMAEDAKQLLTRVGEGTSLRYAIHLITAAALASQKRKGKVVEVQDIDRVYRLFLDVQRSTQYLMEYQSQYINE---VTIEADEDDAN 791
            ++GKAEIVPGVLFIDEVHMLD+ECFSF+NRALE+E +PI+++ATNRG++RIRGT+YKS HG+PMDLLDR + I T  YT DEIR IL IR  EE+VE++ DA  LLT++G+ TSLRYA +LI+ +   + K+K   V++QDI R Y LFLD  RS QYL E   QYI++   VTI  +  D +
Sbjct:  286 EEGKAEIVPGVLFIDEVHMLDIECFSFINRALEDEFSPIVIMATNRGVSRIRGTDYKSPHGMPMDLLDRSITIHTTSYTADEIRTILSIRATEEEVELSGDALALLTKIGQETSLRYAANLISVSQQIALKKKNNTVDLQDIKRAYMLFLDSDRSVQYLEENADQYIDDYGRVTIGQESTDGS 468          
BLAST of CN181554 vs. ExPASy Swiss-Prot
Match: RUVB2_AEDAE (RuvB-like helicase 2 OS=Aedes aegypti GN=rept PE=3 SV=1)

HSP 1 Score: 214.542 bits (545), Expect = 5.338e-55
Identity = 101/167 (60.48%), Postives = 136/167 (81.44%), Query Frame = -3
Query:  291 KKGKAEIVPGVLFIDEVHMLDVECFSFLNRALENEMAPILVVATNRGITRIRGTNYKSAHGIPMDLLDRLLIISTKPYTRDEIRKILDIRCQEEDVEMAEDAKQLLTRVGEGTSLRYAIHLITAAALASQKRKGKVVEVQDIDRVYRLFLDVQRSTQYLMEYQSQYI 791
            ++GKAEI PGVLFIDE HMLD+ECFSFLNRALE++MAP++++ATNRGIT+IRGTNY+S HGIP+DLLDR++II T PY+  EI++IL IRC+EED ++  +A  +L R+   TSLRYAI  IT A+L S++RK   + V+DI +VY LFLD +RS++ + EYQ +Y+
Sbjct:  281 EEGKAEINPGVLFIDEAHMLDIECFSFLNRALESDMAPVVIMATNRGITKIRGTNYRSPHGIPIDLLDRMIIIRTVPYSAKEIKEILKIRCEEEDCQINNEALMVLGRIATETSLRYAIQSITTASLVSKRRKAAEITVEDIRKVYSLFLDEKRSSKIMKEYQDEYL 447          
BLAST of CN181554 vs. ExPASy Swiss-Prot
Match: RUVB2_DEBHA (RuvB-like helicase 2 OS=Debaryomyces hansenii GN=RVB2 PE=3 SV=1)

HSP 1 Score: 213.386 bits (542), Expect = 1.189e-54
Identity = 104/169 (61.54%), Postives = 134/169 (79.29%), Query Frame = -3
Query:  285 KKGKAEIVPGVLFIDEVHMLDVECFSFLNRALENEMAPILVVATNRGITRIRGTNYKSAHGIPMDLLDRLLIISTKPYTRDEIRKILDIRCQEEDVEMAEDAKQLLTRVGEGTSLRYAIHLITAAALASQKRKGKVVEVQDIDRVYRLFLDVQRSTQYLMEYQSQYINE 791
            ++GKAEIVPGVLFIDEVHMLD+ECFSF+NRALE++ API+++ATNRGI++ RGTNYKS HG+PMDLLDR +II T PY  DEIR IL IR  EE+VE+  DA  LLT++G+ TSLRYA +LI+ +   + KR+   V++ DI R Y LFLD  RS QYL E+ +Q+I++
Sbjct:  283 EEGKAEIVPGVLFIDEVHMLDIECFSFINRALEDDFAPIVIMATNRGISKTRGTNYKSPHGLPMDLLDRSIIIHTAPYNADEIRTILLIRATEEEVELTGDALALLTKIGQETSLRYASNLISVSQQIALKRRSNSVDLPDIKRSYMLFLDSDRSVQYLEEFSTQFIDD 451          
BLAST of CN181554 vs. ExPASy Swiss-Prot
Match: RUVB2_CANGA (RuvB-like helicase 2 OS=Candida glabrata GN=RVB2 PE=3 SV=1)

HSP 1 Score: 211.075 bits (536), Expect = 5.902e-54
Identity = 102/169 (60.36%), Postives = 133/169 (78.70%), Query Frame = -3
Query:  285 KKGKAEIVPGVLFIDEVHMLDVECFSFLNRALENEMAPILVVATNRGITRIRGTNYKSAHGIPMDLLDRLLIISTKPYTRDEIRKILDIRCQEEDVEMAEDAKQLLTRVGEGTSLRYAIHLITAAALASQKRKGKVVEVQDIDRVYRLFLDVQRSTQYLMEYQSQYINE 791
            ++GKAEIVPGVLFIDEVHMLD+ECFSF+NRALE+E API+++ATNRGI++ RGTNYKS HG+P+DLLDR +II+T  Y  +EI+ IL IR QEE+VE++ DA  LLT+ G  TSLRY+ +LI+ A   + KRK   VEV D+ + Y LFLD  RS +++ E Q QYI++
Sbjct:  283 EEGKAEIVPGVLFIDEVHMLDIECFSFINRALEDEFAPIIMMATNRGISKTRGTNYKSPHGLPLDLLDRSIIITTSNYNEEEIKTILTIRAQEEEVELSPDALDLLTKTGGETSLRYSSNLISVAQQIALKRKSNTVEVADVKKAYLLFLDSSRSVKFVQENQDQYIDD 451          
BLAST of CN181554 vs. ExPASy Swiss-Prot
Match: RUVB2_ASPFU (RuvB-like helicase 2 OS=Aspergillus fumigatus GN=rvb2 PE=3 SV=1)

HSP 1 Score: 210.69 bits (535), Expect = 7.708e-54
Identity = 96/169 (56.80%), Postives = 137/169 (81.07%), Query Frame = -3
Query:  285 KKGKAEIVPGVLFIDEVHMLDVECFSFLNRALENEMAPILVVATNRGITRIRGTNYKSAHGIPMDLLDRLLIISTKPYTRDEIRKILDIRCQEEDVEMAEDAKQLLTRVGEGTSLRYAIHLITAAALASQKRKGKVVEVQDIDRVYRLFLDVQRSTQYLMEYQSQYINE 791
            ++GKAEI+PGVLFIDEVHMLD+ECFS++NRALE E+API+++A+NRG  RIRGT Y S HG+P+D LDR++I+ST+PY+ DEIR+IL IR QEE+++++ DA  LLT++G+ ++LRYA ++IT + L SQKRK K V + D+ R YRLF D  RS +++  Y+ ++I +
Sbjct:  283 EEGKAEIIPGVLFIDEVHMLDIECFSYINRALEAELAPIVIMASNRGQARIRGTTYTSPHGLPLDFLDRVVIVSTQPYSGDEIRQILAIRAQEEEIDLSPDALALLTKIGQESNLRYASNIITTSHLLSQKRKAKEVSIDDVQRSYRLFYDPARSVKFVNAYEQRFIGD 451          
BLAST of CN181554 vs. ExPASy Swiss-Prot
Match: RUVB2_EMENI (RuvB-like helicase 2 OS=Emericella nidulans GN=rvb2 PE=3 SV=1)

HSP 1 Score: 209.534 bits (532), Expect = 1.717e-53
Identity = 99/182 (54.40%), Postives = 142/182 (78.02%), Query Frame = -3
Query:  255 KKGKAEIVPGVLFIDEVHMLDVECFSFLNRALENEMAPILVVATNRGITRIRGTNYKSAHGIPMDLLDRLLIISTKPYTRDEIRKILDIRCQEEDVEMAEDAKQLLTRVGEGTSLRYAIHLITAAALASQKRKGKVVEVQDIDRVYRLFLDVQRSTQYLMEYQSQYINE---VTIEADEDDA 791
            ++GKAEI+PGVLFIDEVHMLD+EC+S++NRALE E+API+++A+NRG +RIRGT Y S HG+P+D LDR++I+ST+ Y+ DEIR+IL IR QEE+++++ DA  LLT++G+ ++LRYA ++IT + L SQKRK K V V D+ R YRLF D  RS +++ +Y+ ++I +   V   A   DA
Sbjct:  267 EEGKAEIIPGVLFIDEVHMLDIECYSYINRALEAELAPIVIMASNRGHSRIRGTTYNSPHGLPLDFLDRVVIVSTQHYSADEIRQILAIRAQEEEIDLSPDALALLTKIGQESNLRYASNIITTSHLLSQKRKAKEVSVDDVQRSYRLFYDPARSVKFVNQYEQRFIGDQGNVNFTASNGDA 448          
BLAST of CN181554 vs. ExPASy Swiss-Prot
Match: RUVB2_CRYNE (RuvB-like helicase 2 OS=Cryptococcus neoformans GN=RVB2 PE=3 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 2.480e-52
Identity = 100/169 (59.17%), Postives = 129/169 (76.33%), Query Frame = -3
Query:  285 KKGKAEIVPGVLFIDEVHMLDVECFSFLNRALENEMAPILVVATNRGITRIRGTNYKSAHGIPMDLLDRLLIISTKPYTRDEIRKILDIRCQEEDVEMAEDAKQLLTRVGEGTSLRYAIHLITAAALASQKRKGKVVEVQDIDRVYRLFLDVQRSTQYLMEYQSQYINE 791
            ++GKAEIVPGVLFIDEVHMLD+ECFSFLNRA+ENE+AP++V+A+NRGITRIRGT YKS HGIP DLLDR+LIIST  Y  DE+R+I+ IR +EEDV ++  A  LL  +G  TSLRY+++LI  ++L +Q+RK    +V+D+   Y+ F DV+RS QY  E       E
Sbjct:  283 EEGKAEIVPGVLFIDEVHMLDIECFSFLNRAMENELAPLVVMASNRGITRIRGTKYKSPHGIPADLLDRMLIISTNRYEEDEMREIVKIRAEEEDVRLSPAALDLLATMGIQTSLRYSLNLIAPSSLLAQRRKSPQTDVEDVRMAYKYFCDVERSAQYAKETSGMMFGE 451          
The following BLAST results are available for this feature:
BLAST of CN181554 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 47
Match NameE-valueIdentityDescription
RUVB2_DROPS2.560e-5761.02RuvB-like helicase 2 OS=Drosophila pseudoobscura p... [more]
RUVB2_KLULA6.306e-5658.24RuvB-like helicase 2 OS=Kluyveromyces lactis GN=RV... [more]
RUVB2_YEAST8.235e-5661.54RuvB-like protein 2 OS=Saccharomyces cerevisiae GN... [more]
RUVB2_CANAL8.235e-5659.56RuvB-like helicase 2 OS=Candida albicans GN=RVB2 P... [more]
RUVB2_AEDAE5.338e-5560.48RuvB-like helicase 2 OS=Aedes aegypti GN=rept PE=3... [more]
RUVB2_DEBHA1.189e-5461.54RuvB-like helicase 2 OS=Debaryomyces hansenii GN=R... [more]
RUVB2_CANGA5.902e-5460.36RuvB-like helicase 2 OS=Candida glabrata GN=RVB2 P... [more]
RUVB2_ASPFU7.708e-5456.80RuvB-like helicase 2 OS=Aspergillus fumigatus GN=r... [more]
RUVB2_EMENI1.717e-5354.40RuvB-like helicase 2 OS=Emericella nidulans GN=rvb... [more]
RUVB2_CRYNE2.480e-5259.17RuvB-like helicase 2 OS=Cryptococcus neoformans GN... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001B22_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001B22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181554 ID=CN181554; Name=CN181554; organism=Citrus sinensis; type=EST; length=802bp
CTTTTTTCAAAATTATAACGCTGGGGAATCGCCGGAGCCTGTCACATAAT
TAACAAACCAATATCTTTCCAACTGTAGCATACCGGAAGGTGGAAAGATC
CACAACTATTTAAACCAAAACACGTGCCACATATGTATGGATAAAGCATA
GCTAAATGTTGCAAGTACTGGCAATAACTACAATTAACAAGGCGAGATTG
ATGCATAATCGCAACATCTCAAGTCTGGAGTAACTATTCTGGGACCATGG
CATTGGCATCATCTTCATCAGCTTCTATTGTCACTTCATTGATGTACTGA
CTCTGGTATTCCATCAAATACTGAGTTGATCTCTGTACATCCAAAAATAG
ACGGTAGACGCGATCAATGTCCTGAACTTCCACAACTTTTCCTTTCCGTT
TCTGAGATGCCAATGCAGCAGCTGTTATAAGATGGATGGCATATCTCAAG
GATGTTCCTTCCCCAACACGGGTCAACAATTGCTTTGCATCTTCAGCCAT
CTCCACATCTTCCTCCTGGCATCTGATATCTAGAATTTTGCGAATTTCAT
CCCTAGTATAGGGTTTAGTAGAGATGATGAGTAGGCGATCAAGAAGATCC
ATCGGAATCCCATGAGCAGATTTGTAGTTTGTGCCCCTGATTCTAGTGAT
CCCTCTGTTGGTAGCAACAACTAAAATTGGAGCCATCTCATTCTCCAGAG
CACGATTCAGGAAGGAAAAGCACTCGACGTCAAGCATGTGCACCTCATCA
ATAAAGAGGACACCTGGCACAATCTCTGCCTTTCCTTTCTTCCCTCCACT
CT
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