CN181554

Overview
NameCN181554
Unique NameCN181554
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length802
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN181554 vs. ExPASy Swiss-Prot
Match: RUVB2_YARLI (RuvB-like helicase 2 OS=Yarrowia lipolytica GN=RVB2 PE=3 SV=2)

HSP 1 Score: 204.527 bits (519), Expect = 5.524e-52
Identity = 98/182 (53.85%), Postives = 138/182 (75.82%), Query Frame = -3
Query:  246 KKGKAEIVPGVLFIDEVHMLDVECFSFLNRALENEMAPILVVATNRGITRIRGTNYKSAHGIPMDLLDRLLIISTKPYTRDEIRKILDIRCQEEDVEMAEDAKQLLTRVGEGTSLRYAIHLITAAALASQKRKGKVVEVQDIDRVYRLFLDVQRSTQYLMEYQSQYINEVTIEADEDDANAM 791
            ++GKAEIVPGVLFIDEVHMLD+ECFSF+NRALE++MAPI+++ATNRG +  RGT+YKS HG+P+DLLDR++II T PY+ DE+++IL IR  EE+VE++ +A ++LT +G  TSLRY  +LI+ + + +QKRK   V ++D+ R Y LFLD  RS Q+L    +    + T +  E + +AM
Sbjct:  281 EEGKAEIVPGVLFIDEVHMLDMECFSFINRALEDDMAPIVIMATNRGQSTTRGTDYKSPHGLPVDLLDRVIIIPTSPYSPDEVKQILQIRANEEEVELSPEALEILTSIGADTSLRYGSNLISVSHMLAQKRKASSVGLEDVKRAYSLFLDTARSVQFLSSSNNYVGEDGTAKLGEREKDAM 462          
BLAST of CN181554 vs. ExPASy Swiss-Prot
Match: RUVB2_GIBZE (RuvB-like helicase 2 OS=Gibberella zeae GN=RVB2 PE=3 SV=1)

HSP 1 Score: 199.134 bits (505), Expect = 2.321e-50
Identity = 93/167 (55.69%), Postives = 133/167 (79.64%), Query Frame = -3
Query:  291 KKGKAEIVPGVLFIDEVHMLDVECFSFLNRALENEMAPILVVATNRGITRIRGTNYKSAHGIPMDLLDRLLIISTKPYTRDEIRKILDIRCQEEDVEMAEDAKQLLTRVGEGTSLRYAIHLITAAALASQKRKGKVVEVQDIDRVYRLFLDVQRSTQYLMEYQSQYI 791
            ++GKAEIVPGVLFIDEVHMLD+ECFS++NRALE+++AP++++A+NRG +RIRGT+Y+S HG+P+D LDR+ II+T  YT +EI++I+ IR QEE+V++  DA  LLT++G+   LRYA +LIT + L S KRK K VEV D+ R ++LF D  RS +++ E + + I
Sbjct:  274 EEGKAEIVPGVLFIDEVHMLDIECFSYINRALEDDLAPVVIMASNRGNSRIRGTDYRSPHGLPLDFLDRVAIINTHSYTPEEIKQIISIRAQEEEVDVHPDALALLTKIGQEAGLRYASNLITTSQLVSAKRKAKQVEVSDVQRSFQLFYDPARSIKFVAESEKRLI 440          
BLAST of CN181554 vs. ExPASy Swiss-Prot
Match: RUVB2_NEUCR (RuvB-like helicase 2 OS=Neurospora crassa GN=rvb-2 PE=3 SV=1)

HSP 1 Score: 198.749 bits (504), Expect = 3.031e-50
Identity = 94/167 (56.29%), Postives = 131/167 (78.44%), Query Frame = -3
Query:  291 KKGKAEIVPGVLFIDEVHMLDVECFSFLNRALENEMAPILVVATNRGITRIRGTNYKSAHGIPMDLLDRLLIISTKPYTRDEIRKILDIRCQEEDVEMAEDAKQLLTRVGEGTSLRYAIHLITAAALASQKRKGKVVEVQDIDRVYRLFLDVQRSTQYLMEYQSQYI 791
            ++GKAEIVPGVLFIDEVHMLD+ECFS++NRALE+++API+++A+NRG ++IRGT+YKS HG+P+D LDR+ II+T  YT DE+R+IL IR QEE+V++  DA  LLT++G    LRYA +LIT + L   KRK K V V+D+ R ++LF D  RS +++ E + + I
Sbjct:  283 EEGKAEIVPGVLFIDEVHMLDIECFSYINRALESDLAPIVIMASNRGHSKIRGTDYKSPHGLPLDFLDRISIINTHSYTPDELRQILTIRAQEEEVDLTPDALALLTKIGAEAGLRYASNLITTSQLICAKRKAKQVGVEDVQRSFKLFYDPARSVKFVQESEKRLI 449          
BLAST of CN181554 vs. ExPASy Swiss-Prot
Match: RUVB1_CRYNE (RuvB-like helicase 1 OS=Cryptococcus neoformans GN=RVB1 PE=3 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 1.667e-40
Identity = 83/170 (48.82%), Postives = 121/170 (71.18%), Query Frame = -3
Query:  315 KKGKAEIVPGVLFIDEVHMLDVECFSFLNRALENEMAPILVVATNRGITRIRGTNY-----------KSAHGIPMDLLDRLLIISTKPYTRDEIRKILDIRCQEEDVEMAEDAKQLLTRVGEGTSLRYAIHLITAAALASQKRKGKVVEVQDIDRVYRLFLDVQRSTQYL 791
            ++G AE+VPGVLFIDEVHMLD+ECF++LNRALE+ M+P +V+A+NRGI+ IRGT Y           ++ HG+P+DLLDR +I+ T+ YTRDEIR+I+++RC+ E + ++ +A   L   GE +SLRYA+ L+T A + S+ +    V V D++ +  LFLD +RS   L
Sbjct:  305 EQGVAELVPGVLFIDEVHMLDMECFTYLNRALESPMSPYVVLASNRGISTIRGTEYDGVAGSASEGIRAPHGLPVDLLDRCMIVKTQLYTRDEIRRIVEMRCKVEGIAISSEAVDKLADEGERSSLRYALQLLTPAGIVSKNKGKGEVGVADVEELGELFLDAKRSAGVL 474          
BLAST of CN181554 vs. ExPASy Swiss-Prot
Match: RUVB1_ASHGO (RuvB-like helicase 1 OS=Ashbya gossypii GN=RVB1 PE=3 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 1.411e-39
Identity = 85/167 (50.90%), Postives = 122/167 (73.05%), Query Frame = -3
Query:  291 KGKAEIVPGVLFIDEVHMLDVECFSFLNRALENEMAPILVVATNRGITRIRGT-NYKSAHGIPMDLLDRLLIISTKPYTRDEIRKILDIRCQEEDVEMAEDAKQLLTRVGEGTSLRYAIHLITAAALASQKRKGKVVEVQDIDRVYRLFLDVQRSTQYLMEYQSQYI 788
            +G AE+VPGVLFIDEV+MLD+E F+FLNRALE E+AP++V+A+NRG+T +RGT +  SAHGIP DL+DRLLI+ T PYT+DEIR I++ R + E++++ + A  LL  +G   SLRYA+ L+T A + +       + + DI+    LFLD +RST+ ++E  S Y+
Sbjct:  294 QGVAELVPGVLFIDEVNMLDIEIFTFLNRALELEIAPVVVLASNRGMTTVRGTEDVVSAHGIPPDLIDRLLIVRTLPYTQDEIRVIIEKRSKVENLQLEQAALDLLAAMGSDMSLRYALQLLTPAGILAATAGRTEILLSDIEEAKMLFLDAKRSTK-ILESNSNYL 459          
BLAST of CN181554 vs. ExPASy Swiss-Prot
Match: RUVB1_SCHPO (RuvB-like helicase 1 OS=Schizosaccharomyces pombe GN=rvb1 PE=2 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 5.363e-39
Identity = 80/158 (50.63%), Postives = 113/158 (71.52%), Query Frame = -3
Query:  321 KKGKAEIVPGVLFIDEVHMLDVECFSFLNRALENEMAPILVVATNRGITRIRGT-NYKSAHGIPMDLLDRLLIISTKPYTRDEIRKILDIRCQEEDVEMAEDAKQLLTRVGEGTSLRYAIHLITAAALASQKRKGKVVEVQDIDRVYRLFLDVQRSTQ 791
            ++G AE++PGVLFIDEVHMLD+ECF++LN+ALE+ ++PI++ A+NRGI  IRGT + ++ HGIP DLLDRLLI+ T PY+  EIR IL IR + E++ + ++    L + G  TSLRY I L+T  ++ +     K + VQDI+    LFLD +RS Q
Sbjct:  289 EQGIAELIPGVLFIDEVHMLDIECFTYLNQALESTISPIVIFASNRGICTIRGTEDIQAPHGIPTDLLDRLLIVRTLPYSESEIRSILQIRAKVENIILTDECLDKLAQEGSRTSLRYVIQLLTPVSIIASLHGNKEIGVQDIEECNDLFLDARRSAQ 446          
BLAST of CN181554 vs. ExPASy Swiss-Prot
Match: RUVB1_DANRE (RuvB-like 1 OS=Danio rerio GN=ruvbl1 PE=2 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 2.662e-38
Identity = 79/167 (47.31%), Postives = 121/167 (72.46%), Query Frame = -3
Query:  291 KGKAEIVPGVLFIDEVHMLDVECFSFLNRALENEMAPILVVATNRGITRIRGT-NYKSAHGIPMDLLDRLLIISTKPYTRDEIRKILDIRCQEEDVEMAEDAKQLLTRVGEGTSLRYAIHLITAAALASQKRKGKVVEVQDIDRVYRLFLDVQRSTQYLMEYQSQYI 788
            +G AE+VPGVLFIDEVHMLD+ECF++L+RALE+ +API+V A+NRG   IRGT +  S HGIP+DLLDR++II T  YT  E+++I+ IR Q E + ++E+A   L  +G  T+LRYA+ L+T A+L ++ +  +VVE + ++ +  LF D + S + L +  ++++
Sbjct:  289 QGVAELVPGVLFIDEVHMLDIECFTYLHRALESSIAPIVVFASNRGNCLIRGTEDISSPHGIPLDLLDRVMIIRTMLYTPQEMKQIIKIRAQTEGLNISEEALSHLGEIGTKTTLRYAVQLLTPASLLARVQGREVVEKEHVEEINELFYDAKSSAKILQDQHTKFM 455          
BLAST of CN181554 vs. ExPASy Swiss-Prot
Match: RUVB1_USTMA (RuvB-like helicase 1 OS=Ustilago maydis GN=RVB1 PE=3 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 5.929e-38
Identity = 82/183 (44.81%), Postives = 123/183 (67.21%), Query Frame = -3
Query:  270 KKGKAEIVPGVLFIDEVHMLDVECFSFLNRALENEMAPILVVATNRGITRIRGTNYK---------SAHGIPMDLLDRLLIISTKPYTRDEIRKILDIRCQEEDVEMAEDAKQLLTRVGEGTSLRYAIHLITAAALASQKRKGKVVEVQDIDRVYRLFLDVQRSTQYLMEYQSQYINEVTIEA 791
            ++G AE+VPGVLFIDEVHMLD+ECF++LNRALE+ ++P +++ATNRG   +RGT Y+         + HGIP+DLLDR +I+ T PY +DEIR++L +R + E   +AEDA + LT  G  +SLR+A+ L++ +++ ++      + ++DI     LF+D +RS + LM      I E T EA
Sbjct:  305 EQGIAELVPGVLFIDEVHMLDMECFTYLNRALESTISPHVILATNRGQCMVRGTEYEGPASGTGIVAPHGIPLDLLDRCMIVRTMPYEKDEIREVLRLRAKVEGHLIAEDALEKLTEEGVSSSLRFALQLLSPSSILAKTAGRSEITIKDIVEANELFIDARRSAKVLMS-----IGEATTEA 482          
BLAST of CN181554 vs. ExPASy Swiss-Prot
Match: RUVB1_AEDAE (RuvB-like helicase 1 OS=Aedes aegypti GN=pont PE=3 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 5.929e-38
Identity = 81/167 (48.50%), Postives = 116/167 (69.46%), Query Frame = -3
Query:  291 KGKAEIVPGVLFIDEVHMLDVECFSFLNRALENEMAPILVVATNRGITRIRGTN-YKSAHGIPMDLLDRLLIISTKPYTRDEIRKILDIRCQEEDVEMAEDAKQLLTRVGEGTSLRYAIHLITAAALASQKRKGKVVEVQDIDRVYRLFLDVQRSTQYLMEYQSQYI 788
            +G AE+VPGVLFIDEVHMLD+ECF++L+++LE+ +API++ ATNRG   IRGT+   S HGIP+DLLDRLLI+ T PY   EI +I+ +R Q E + + + A Q L+ +G+ T+LRYA+ L+T A    +      +   DI  V  LFLD +RS ++L E  ++Y+
Sbjct:  289 QGIAELVPGVLFIDEVHMLDLECFTYLHKSLESAIAPIVIFATNRGRCVIRGTDDIISPHGIPLDLLDRLLIVRTAPYNLSEIEQIIKLRAQTEGLSVEDSAIQALSEIGDNTTLRYAVQLLTPAHQNCKVNGRTQITKDDIVEVNGLFLDAKRSAKFLQEENTKYM 455          
BLAST of CN181554 vs. ExPASy Swiss-Prot
Match: RUVB1_YEAST (RuvB-like protein 1 OS=Saccharomyces cerevisiae GN=RVB1 PE=1 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 1.321e-37
Identity = 78/167 (46.71%), Postives = 118/167 (70.66%), Query Frame = -3
Query:  291 KGKAEIVPGVLFIDEVHMLDVECFSFLNRALENEMAPILVVATNRGITRIRGT-NYKSAHGIPMDLLDRLLIISTKPYTRDEIRKILDIRCQEEDVEMAEDAKQLLTRVGEGTSLRYAIHLITAAALASQKRKGKVVEVQDIDRVYRLFLDVQRSTQYLMEYQSQYI 788
            +G AE++PGVLFIDEV+MLD+E F++LN+ALE+ +AP++V+A+NRG+T +RGT +  S HG+P DL+DRLLI+ T PY +DEIR I++ R   E +++   A  LL  +G  TSLRYA+ L+    + +Q    K + V D++    LFLD +RST+ ++E  + Y+
Sbjct:  298 QGVAELIPGVLFIDEVNMLDIEIFTYLNKALESNIAPVVVLASNRGMTTVRGTEDVISPHGVPPDLIDRLLIVRTLPYDKDEIRTIIERRATVERLQVESSALDLLATMGTETSLRYALQLLAPCGILAQTSNRKEIVVNDVNEAKLLFLDAKRSTK-ILETSANYL 463          
The following BLAST results are available for this feature:
BLAST of CN181554 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 47
Match NameE-valueIdentityDescription
RUVB2_YARLI5.524e-5253.85RuvB-like helicase 2 OS=Yarrowia lipolytica GN=RVB... [more]
RUVB2_GIBZE2.321e-5055.69RuvB-like helicase 2 OS=Gibberella zeae GN=RVB2 PE... [more]
RUVB2_NEUCR3.031e-5056.29RuvB-like helicase 2 OS=Neurospora crassa GN=rvb-2... [more]
RUVB1_CRYNE1.667e-4048.82RuvB-like helicase 1 OS=Cryptococcus neoformans GN... [more]
RUVB1_ASHGO1.411e-3950.90RuvB-like helicase 1 OS=Ashbya gossypii GN=RVB1 PE... [more]
RUVB1_SCHPO5.363e-3950.63RuvB-like helicase 1 OS=Schizosaccharomyces pombe ... [more]
RUVB1_DANRE2.662e-3847.31RuvB-like 1 OS=Danio rerio GN=ruvbl1 PE=2 SV=1[more]
RUVB1_USTMA5.929e-3844.81RuvB-like helicase 1 OS=Ustilago maydis GN=RVB1 PE... [more]
RUVB1_AEDAE5.929e-3848.50RuvB-like helicase 1 OS=Aedes aegypti GN=pont PE=3... [more]
RUVB1_YEAST1.321e-3746.71RuvB-like protein 1 OS=Saccharomyces cerevisiae GN... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001B22_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001B22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181554 ID=CN181554; Name=CN181554; organism=Citrus sinensis; type=EST; length=802bp
CTTTTTTCAAAATTATAACGCTGGGGAATCGCCGGAGCCTGTCACATAAT
TAACAAACCAATATCTTTCCAACTGTAGCATACCGGAAGGTGGAAAGATC
CACAACTATTTAAACCAAAACACGTGCCACATATGTATGGATAAAGCATA
GCTAAATGTTGCAAGTACTGGCAATAACTACAATTAACAAGGCGAGATTG
ATGCATAATCGCAACATCTCAAGTCTGGAGTAACTATTCTGGGACCATGG
CATTGGCATCATCTTCATCAGCTTCTATTGTCACTTCATTGATGTACTGA
CTCTGGTATTCCATCAAATACTGAGTTGATCTCTGTACATCCAAAAATAG
ACGGTAGACGCGATCAATGTCCTGAACTTCCACAACTTTTCCTTTCCGTT
TCTGAGATGCCAATGCAGCAGCTGTTATAAGATGGATGGCATATCTCAAG
GATGTTCCTTCCCCAACACGGGTCAACAATTGCTTTGCATCTTCAGCCAT
CTCCACATCTTCCTCCTGGCATCTGATATCTAGAATTTTGCGAATTTCAT
CCCTAGTATAGGGTTTAGTAGAGATGATGAGTAGGCGATCAAGAAGATCC
ATCGGAATCCCATGAGCAGATTTGTAGTTTGTGCCCCTGATTCTAGTGAT
CCCTCTGTTGGTAGCAACAACTAAAATTGGAGCCATCTCATTCTCCAGAG
CACGATTCAGGAAGGAAAAGCACTCGACGTCAAGCATGTGCACCTCATCA
ATAAAGAGGACACCTGGCACAATCTCTGCCTTTCCTTTCTTCCCTCCACT
CT
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