CN181554

Overview
NameCN181554
Unique NameCN181554
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length802
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN181554 vs. ExPASy Swiss-Prot
Match: RUVB1_ASPFU (RuvB-like helicase 1 OS=Aspergillus fumigatus GN=rvb1 PE=3 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 2.754e-35
Identity = 81/169 (47.93%), Postives = 115/169 (68.05%), Query Frame = -3
Query:  288 KGKAEIVPGVLFIDEVHMLDVECFSFLNRALENEMAPILVVATNRGITRIRGT-NYKSAHGIPMDLLDRLLIISTKPYTRDEIRKILDIRCQEEDVEMAEDAKQLLTRVGEGTSLRYAIHLIT-AAALASQKRKGKVVEVQDIDRVYRLFLDVQRSTQYLMEYQSQYIN 788
            +G AE+VPGVLFIDEVHMLD+ECF++LNRALE+ ++PI+++A+NRG T IRGT +  +AHGIP DLL RLLII T PYT DEI+ I+ +R + E + + + A   +   G   SLRYA+ L+T A+ LA    +   +E  DI     LFLD +RS   + +   ++++
Sbjct:  290 QGVAELVPGVLFIDEVHMLDIECFTYLNRALESSISPIVILASNRGHTVIRGTDDITAAHGIPPDLLARLLIIPTHPYTPDEIKTIIRLRAKTEGLNITDPALDKVADHGSKVSLRYALQLLTPASILARVNGRPGGIEEADIAECEDLFLDAKRSAAIVSQDSEKFLS 458          
BLAST of CN181554 vs. ExPASy Swiss-Prot
Match: RUVB1_NEUCR (RuvB-like helicase 1 OS=Neurospora crassa GN=rvb-1 PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 4.698e-35
Identity = 79/165 (47.88%), Postives = 110/165 (66.67%), Query Frame = -3
Query:  297 KGKAEIVPGVLFIDEVHMLDVECFSFLNRALENEMAPILVVATNRGITRIRGT-NYKSAHGIPMDLLDRLLIISTKPYTRDEIRKILDIRCQEEDVEMAEDAKQLLTRVGEGTSLRYAIHLITAAALASQKRKGKVVEVQDIDRVYRLFLDVQRSTQYLMEYQSQ 788
            +G AE+VPGVLFIDE HMLDVECF++LN+ALE+ ++PI+V+A+NRG+T IRG  +  +AHGIP D L RLLII T  Y  +EI++I+ IR   E V++ E A   +   G   SLRY + L+T A++ ++      ++VQD+     LFLD +RS   L   Q Q
Sbjct:  290 QGVAELVPGVLFIDEAHMLDVECFTYLNKALESPISPIVVLASNRGMTGIRGAEDLVAAHGIPPDFLSRLLIIPTTAYDPEEIKRIVKIRSTTEGVKITEAAIDKIAEHGVRISLRYCLQLLTPASILAKVNGRNEIDVQDVAECEDLFLDARRSAALLSSEQGQ 454          
BLAST of CN181554 vs. ExPASy Swiss-Prot
Match: RUVB1_DROME (RuvB-like helicase 1 OS=Drosophila melanogaster GN=pont PE=1 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 8.014e-35
Identity = 75/167 (44.91%), Postives = 118/167 (70.66%), Query Frame = -3
Query:  291 KGKAEIVPGVLFIDEVHMLDVECFSFLNRALENEMAPILVVATNRGITRIRGT-NYKSAHGIPMDLLDRLLIISTKPYTRDEIRKILDIRCQEEDVEMAEDAKQLLTRVGEGTSLRYAIHLITAAALASQKRKGKVVEVQDIDRVYRLFLDVQRSTQYLMEYQSQYI 788
            +G AE+VPGVLFIDE+HMLD+E F++L+++LE+ +API++ ATNRG   IRGT +  S HGIP+DLLDRLLII T  Y+  ++ +I+ +R Q E +++ E+A   L+ +G  ++LRYA+ L+T A    +      +   DI+ V+ LFLD +RS+++L E  ++++
Sbjct:  289 QGIAELVPGVLFIDEIHMLDLETFTYLHKSLESPIAPIVIFATNRGRCVIRGTTDIVSPHGIPLDLLDRLLIIRTLLYSTADMEQIIKLRAQTEGLQLEENAFTRLSEIGTSSTLRYAVQLLTPAHQMCKVNGRNQISKDDIEDVHSLFLDAKRSSKHLSEKNNKFM 455          
BLAST of CN181554 vs. ExPASy Swiss-Prot
Match: RUVB2_ENCCU (RuvB-like helicase 2 OS=Encephalitozoon cuniculi GN=RVB2 PE=1 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.785e-34
Identity = 71/156 (45.51%), Postives = 110/156 (70.51%), Query Frame = -3
Query:  321 KGKAEIVPGVLFIDEVHMLDVECFSFLNRALENEMAPILVVATNRGITRIRGTNYKSAHGIPMDLLDRLLIISTKPYTRDEIRKILDIRCQEEDVEMAEDAKQLLTRVGEGTSLRYAIHLITAAALASQKRKGKVVEVQDIDRVYRLFLDVQRSTQ 788
            +GKAEIV GVLFIDEVHMLD+E F+FLN+A+E +  P+++V+TN+G   +RGT+  S +GIP D +DR LIIS + + R ++  IL  R  EED+ + +DA   L  + E + LRY+++L+T +++ + +R G+V  + D++R + LFLD  R T+
Sbjct:  260 EGKAEIVRGVLFIDEVHMLDIESFAFLNKAVEEDFCPVILVSTNKGECIVRGTDEPSPYGIPRDFIDRALIISMEKHCRRDLEAILRHRILEEDILIDDDAVDRLVSISEASGLRYSMNLLTISSMRASRRNGRVA-LGDVERAFELFLDEARGTE 414          
BLAST of CN181554 vs. ExPASy Swiss-Prot
Match: RUVB1_EMENI (RuvB-like helicase 1 OS=Emericella nidulans GN=rvb1 PE=3 SV=2)

HSP 1 Score: 146.362 bits (368), Expect = 1.785e-34
Identity = 79/156 (50.64%), Postives = 109/156 (69.87%), Query Frame = -3
Query:  327 KGKAEIVPGVLFIDEVHMLDVECFSFLNRALENEMAPILVVATNRGITRIRGT-NYKSAHGIPMDLLDRLLIISTKPYTRDEIRKILDIRCQEEDVEMAEDAKQLLTRVGEGTSLRYAIHLIT-AAALASQKRKGKVVEVQDIDRVYRLFLDVQRS 788
            +G AE+VPGVLFIDEVHMLD+ECF++LNRALE+ ++PI+++A+NRG T IRGT +  +AHGIP DLL RLLII T PY+ DEI+ I+ +R + E + + + A   +   G   SLRYA+ L+T A+ LA    +   +E  D+     LFLD +RS
Sbjct:  290 QGVAELVPGVLFIDEVHMLDIECFTYLNRALESSISPIVILASNRGHTVIRGTDDISAAHGIPPDLLARLLIIPTHPYSPDEIKTIIRLRAKTEGLNITDPALDKVAEHGSKVSLRYALQLLTPASILARVNGRPGGIEEADVTECEDLFLDSKRS 445          
BLAST of CN181554 vs. ExPASy Swiss-Prot
Match: RUVB1_DROPS (RuvB-like helicase 1 OS=Drosophila pseudoobscura pseudoobscura GN=pont PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 3.045e-34
Identity = 74/167 (44.31%), Postives = 117/167 (70.06%), Query Frame = -3
Query:  291 KGKAEIVPGVLFIDEVHMLDVECFSFLNRALENEMAPILVVATNRGITRIRGT-NYKSAHGIPMDLLDRLLIISTKPYTRDEIRKILDIRCQEEDVEMAEDAKQLLTRVGEGTSLRYAIHLITAAALASQKRKGKVVEVQDIDRVYRLFLDVQRSTQYLMEYQSQYI 788
            +G AE+VPGVLFIDE+HMLD+E F++L+++LE+ +API++ ATNRG   IRGT +  S HGIP+DLLDRLLII T  Y+  ++ +I+ +R Q E +++ + A   L+ +G  ++LRYA+ L+T A    +      +   DI+ V+ LFLD +RS+++L E  ++++
Sbjct:  289 QGIAELVPGVLFIDEIHMLDLETFTYLHKSLESPIAPIVIFATNRGRCVIRGTTDIVSPHGIPLDLLDRLLIIRTLLYSTSDMEQIIKLRAQTEGLQLEDPAFARLSEIGTSSTLRYAVQLLTPAHQMCKVNGRTQITKDDIEDVHSLFLDAKRSSKHLSEKNNKFM 455          
BLAST of CN181554 vs. ExPASy Swiss-Prot
Match: RUVB1_ENCCU (RuvB-like protein 1 OS=Encephalitozoon cuniculi GN=RVB1 PE=1 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.515e-25
Identity = 66/152 (43.42%), Postives = 95/152 (62.50%), Query Frame = -3
Query:  339 KKGKAEIVPGVLFIDEVHMLDVECFSFLNRALENEMAPILVVATNRGITRIRGTN-YKSAHGIPMDLLDRLLIISTKPYTRDEIRKILDIRCQEEDVEMAEDAKQLLTRVGEGTSLRYAIHLITAAALASQKRKGKVVEVQDIDRVYRLFLD 791
            + G AEIVPGVLFIDEVHMLDVECF+FL++ +E+ ++P ++ A+N+G+  I+G++      GI  DLLDR++IIS K    +  R+I+  R +EE +EM +DA      +    SLRY I LI        K  G  V V++++ V  LF D
Sbjct:  279 ENGNAEIVPGVLFIDEVHMLDVECFTFLHKVIESPLSPTIIFASNKGMAPIKGSDGLLGPFGITKDLLDRIVIISVKRNPDEANREIIRRRMKEEGLEMDDDAFGFFVGLSTSRSLRYCISLIPLL-----KTYGGCVSVRNVEEVAELFHD 425          
The following BLAST results are available for this feature:
BLAST of CN181554 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 47
Match NameE-valueIdentityDescription
RUVB1_ASPFU2.754e-3547.93RuvB-like helicase 1 OS=Aspergillus fumigatus GN=r... [more]
RUVB1_NEUCR4.698e-3547.88RuvB-like helicase 1 OS=Neurospora crassa GN=rvb-1... [more]
RUVB1_DROME8.014e-3544.91RuvB-like helicase 1 OS=Drosophila melanogaster GN... [more]
RUVB2_ENCCU1.785e-3445.51RuvB-like helicase 2 OS=Encephalitozoon cuniculi G... [more]
RUVB1_EMENI1.785e-3450.64RuvB-like helicase 1 OS=Emericella nidulans GN=rvb... [more]
RUVB1_DROPS3.045e-3444.31RuvB-like helicase 1 OS=Drosophila pseudoobscura p... [more]
RUVB1_ENCCU1.515e-2543.42RuvB-like protein 1 OS=Encephalitozoon cuniculi GN... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001B22_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001B22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181554 ID=CN181554; Name=CN181554; organism=Citrus sinensis; type=EST; length=802bp
CTTTTTTCAAAATTATAACGCTGGGGAATCGCCGGAGCCTGTCACATAAT
TAACAAACCAATATCTTTCCAACTGTAGCATACCGGAAGGTGGAAAGATC
CACAACTATTTAAACCAAAACACGTGCCACATATGTATGGATAAAGCATA
GCTAAATGTTGCAAGTACTGGCAATAACTACAATTAACAAGGCGAGATTG
ATGCATAATCGCAACATCTCAAGTCTGGAGTAACTATTCTGGGACCATGG
CATTGGCATCATCTTCATCAGCTTCTATTGTCACTTCATTGATGTACTGA
CTCTGGTATTCCATCAAATACTGAGTTGATCTCTGTACATCCAAAAATAG
ACGGTAGACGCGATCAATGTCCTGAACTTCCACAACTTTTCCTTTCCGTT
TCTGAGATGCCAATGCAGCAGCTGTTATAAGATGGATGGCATATCTCAAG
GATGTTCCTTCCCCAACACGGGTCAACAATTGCTTTGCATCTTCAGCCAT
CTCCACATCTTCCTCCTGGCATCTGATATCTAGAATTTTGCGAATTTCAT
CCCTAGTATAGGGTTTAGTAGAGATGATGAGTAGGCGATCAAGAAGATCC
ATCGGAATCCCATGAGCAGATTTGTAGTTTGTGCCCCTGATTCTAGTGAT
CCCTCTGTTGGTAGCAACAACTAAAATTGGAGCCATCTCATTCTCCAGAG
CACGATTCAGGAAGGAAAAGCACTCGACGTCAAGCATGTGCACCTCATCA
ATAAAGAGGACACCTGGCACAATCTCTGCCTTTCCTTTCTTCCCTCCACT
CT
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