CN181550

Overview
NameCN181550
Unique NameCN181550
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length750
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig121 contig Csv1_Contig121:416..1165. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN181550 vs. ExPASy Swiss-Prot
Match: FRIML_PAGBE (Ferritin, liver middle subunit OS=Pagothenia bernacchii PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 6.379e-15
Identity = 42/120 (35.00%), Postives = 65/120 (54.17%), Query Frame = -1
Query:  385 YFDRDNIALRGLXXXXXXXXXXXXXXXXXFMEYQNLRGGKVKLHSIMQPPSEFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVEAINKIAKYVSQL 744
            YF RD++AL G                   + +QN RGG++ L  I +P  +    E G  L A++ +L LEK  N+ LL LH +A  + DP M +F+E+ +L EQVE+I K+  +++ L
Sbjct:   37 YFSRDDVALPGFAHFFKENSDEEREHADKLLTFQNSRGGRIFLQDIKKPERD----EWGSGLDALQSSLQLEKNVNQALLDLHKIASDHTDPHMCDFLETHYLNEQVESIKKLGDFITNL 152          
BLAST of CN181550 vs. ExPASy Swiss-Prot
Match: FTMT_HUMAN (Ferritin, mitochondrial OS=Homo sapiens GN=FTMT PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.421e-14
Identity = 46/124 (37.10%), Postives = 67/124 (54.03%), Query Frame = -1
Query:  373 YFDRDNIALRGLXXXXXXXXXXXXXXXXXFMEYQNLRGGKVKLHSIMQPPSEFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVEAINKIAKYVSQLRMVG 744
            YF RD++AL                     M  QN RGG+++L  I +P  E D  E G  L+AME AL LEK  N+ LL LH++A    DP + +F+E+ +L EQV++I ++  +V  L  +G
Sbjct:  100 YFSRDDVALNNFSRYFLHQSREETEHAEKLMRLQNQRGGRIRLQDIKKP--EQDDWESG--LHAMECALLLEKNVNQSLLELHALASDKGDPHLCDFLETYYLNEQVKSIKELGDHVHNLVKMG 219          
BLAST of CN181550 vs. ExPASy Swiss-Prot
Match: FRIMS_PAGBE (Ferritin, spleen middle subunit OS=Pagothenia bernacchii PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.421e-14
Identity = 42/120 (35.00%), Postives = 64/120 (53.33%), Query Frame = -1
Query:  385 YFDRDNIALRGLXXXXXXXXXXXXXXXXXFMEYQNLRGGKVKLHSIMQPPSEFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVEAINKIAKYVSQL 744
            YF RD++AL G                   + +QN RGG++ L  I +P  +    E G+ +  M+ AL LEK  N+ LL LH +A    DP M +F+E+ +L EQVE+I K+  +++ L
Sbjct:   37 YFSRDDVALPGFAHFFKENSDEEREHADKLLTFQNSRGGRIFLQDIKKPERD----EWGNGVDVMQCALQLEKNVNQALLDLHKIASGKVDPHMCDFLETHYLNEQVESIKKLGDFITNL 152          
BLAST of CN181550 vs. ExPASy Swiss-Prot
Match: FRIL_CANFA (Ferritin light chain OS=Canis familiaris GN=FTL PE=2 SV=3)

HSP 1 Score: 80.1073 bits (196), Expect = 1.421e-14
Identity = 47/140 (33.57%), Postives = 74/140 (52.86%), Query Frame = -1
Query:  334 YFDRDNIALRGLXXXXXXXXXXXXXXXXXFMEYQNLRGGKVKLHSIMQPPSEFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVEAINKIAKYVSQLRMVG---KGHGLWHFDQMLL 744
            YFDRD++AL G+                 F++ QN RGG+     + +P  +    E G  L AME AL LEK  N+ LL LH++     DP + +F+E+ FL E+V+ I K+  +++ LR +     G G + F+++ L
Sbjct:   37 YFDRDDVALEGVGHFFRELAEEKREGAERFLKMQNQRGGRALFQDVQKPSQD----EWGKTLDAMEAALLLEKSLNQALLDLHALGSARADPHLCDFLENHFLDEEVKLIKKMGDHLTNLRRLATPQAGLGEYLFERLTL 172          
BLAST of CN181550 vs. ExPASy Swiss-Prot
Match: FRIL1_RAT (Ferritin light chain 1 OS=Rattus norvegicus GN=Ftl1 PE=1 SV=3)

HSP 1 Score: 79.7221 bits (195), Expect = 1.856e-14
Identity = 42/123 (34.15%), Postives = 66/123 (53.66%), Query Frame = -1
Query:  376 YFDRDNIALRGLXXXXXXXXXXXXXXXXXFMEYQNLRGGKVKLHSIMQPPSEFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVEAINKIAKYVSQLRMV 744
            +FDRD++AL G+                  ++ QN RGG+     + +P  +    E G  L AME AL+LEK  N+ LL LH++     DP + +F+ES FL ++V+ I K+  +++ LR V
Sbjct:   37 FFDRDDVALEGVGHFFRELAEEKREGAERLLKLQNERGGRALFQDVQKPSQD----EWGKTLEAMEAALALEKNLNQALLDLHALGSARTDPHLCDFLESHFLDKEVKLIKKMGNHLTNLRRV 155          
BLAST of CN181550 vs. ExPASy Swiss-Prot
Match: FRIL_RABIT (Ferritin light chain OS=Oryctolagus cuniculus GN=FTL PE=2 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 2.424e-14
Identity = 40/121 (33.06%), Postives = 66/121 (54.55%), Query Frame = -1
Query:  382 YFDRDNIALRGLXXXXXXXXXXXXXXXXXFMEYQNLRGGKVKLHSIMQPPSEFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVEAINKIAKYVSQLR 744
            YFDRD++AL G+                  ++ QN RGG+     + +P  +    E G  L AME AL+LEK  N+ LL LH++   + DP + +F+E+ FL E+V+ + K+  +++ +R
Sbjct:   37 YFDRDDVALEGVSHFFRELAEEKREAAERLLKMQNQRGGRALFQDVQKPSQD----EWGKTLNAMEAALALEKNLNQALLDLHALGSAHTDPHLCDFLENHFLDEEVKLLKKMGDHLTNIR 153          
BLAST of CN181550 vs. ExPASy Swiss-Prot
Match: FRIL_HORSE (Ferritin light chain OS=Equus caballus GN=FTL PE=1 SV=4)

HSP 1 Score: 78.9518 bits (193), Expect = 3.166e-14
Identity = 44/133 (33.08%), Postives = 70/133 (52.63%), Query Frame = -1
Query:  349 YFDRDNIALRGLXXXXXXXXXXXXXXXXXFMEYQNLRGGKVKLHSIMQPPSEFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVEAINKIAKYVSQL-RMVGKGHGLWHF 744
            YFDRD++AL G+                  ++ QN RGG+     + +P  +    E G  L AM+ A+ LEK  N+ LL LH++     DP + +F+ES FL E+V+ I K+  +++ + R+VG   GL  +
Sbjct:   37 YFDRDDVALEGVCHFFRELAEEKREGAERLLKMQNQRGGRALFQDLQKPSQD----EWGTTLDAMKAAIVLEKSLNQALLDLHALGSAQADPHLCDFLESHFLDEEVKLIKKMGDHLTNIQRLVGSQAGLGEY 165          
BLAST of CN181550 vs. ExPASy Swiss-Prot
Match: FRIL1_MOUSE (Ferritin light chain 1 OS=Mus musculus GN=Ftl1 PE=1 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 5.400e-14
Identity = 40/123 (32.52%), Postives = 66/123 (53.66%), Query Frame = -1
Query:  376 YFDRDNIALRGLXXXXXXXXXXXXXXXXXFMEYQNLRGGKVKLHSIMQPPSEFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVEAINKIAKYVSQLRMV 744
            +FDRD++AL G+                  +E+QN RGG+     + +P  +    E G    AME AL++EK  N+ LL LH++     DP + +F+ES +L ++V+ I K+  +++ LR V
Sbjct:   37 FFDRDDVALEGVGHFFRELAEEKREGAERLLEFQNDRGGRALFQDVQKPSQD----EWGKTQEAMEAALAMEKNLNQALLDLHALGSARTDPHLCDFLESHYLDKEVKLIKKMGNHLTNLRRV 155          
BLAST of CN181550 vs. ExPASy Swiss-Prot
Match: FRIL_PONAB (Ferritin light chain OS=Pongo abelii GN=FTL PE=2 SV=3)

HSP 1 Score: 77.7962 bits (190), Expect = 7.053e-14
Identity = 44/140 (31.43%), Postives = 74/140 (52.86%), Query Frame = -1
Query:  334 YFDRDNIALRGLXXXXXXXXXXXXXXXXXFMEYQNLRGGKVKLHSIMQPPSEFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVEAINKIAKYVSQLRMVG---KGHGLWHFDQMLL 744
            YFDRD++AL G+                  ++ QN RGG+     I +P  +    E G    AM+ A++LEK  N+ LL LH++   + DP + +F+E+ FL E+V+ I K+  +++ L  +G    G G + F+++ L
Sbjct:   37 YFDRDDVALEGVSHFFRELAEEKREGYERLLKMQNQRGGRALFQDIKKPAED----EWGKTPDAMKAAMALEKKLNQALLDLHALGSAHTDPHLCDFLETHFLDEEVKLIKKMGDHLTNLHRLGGPEAGLGEYLFERLTL 172          
BLAST of CN181550 vs. ExPASy Swiss-Prot
Match: FRIL_HUMAN (Ferritin light chain OS=Homo sapiens GN=FTL PE=1 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 9.212e-14
Identity = 44/140 (31.43%), Postives = 73/140 (52.14%), Query Frame = -1
Query:  334 YFDRDNIALRGLXXXXXXXXXXXXXXXXXFMEYQNLRGGKVKLHSIMQPPSEFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVEAINKIAKYVSQLRMVG---KGHGLWHFDQMLL 744
            YFDRD++AL G+                  ++ QN RGG+     I +P  +    E G    AM+ A++LEK  N+ LL LH++     DP + +F+E+ FL E+V+ I K+  +++ L  +G    G G + F+++ L
Sbjct:   37 YFDRDDVALEGVSHFFRELAEEKREGYERLLKMQNQRGGRALFQDIKKPAED----EWGKTPDAMKAAMALEKKLNQALLDLHALGSARTDPHLCDFLETHFLDEEVKLIKKMGDHLTNLHRLGGPEAGLGEYLFERLTL 172          
The following BLAST results are available for this feature:
BLAST of CN181550 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 67
Match NameE-valueIdentityDescription
FRIML_PAGBE6.379e-1535.00Ferritin, liver middle subunit OS=Pagothenia berna... [more]
FTMT_HUMAN1.421e-1437.10Ferritin, mitochondrial OS=Homo sapiens GN=FTMT PE... [more]
FRIMS_PAGBE1.421e-1435.00Ferritin, spleen middle subunit OS=Pagothenia bern... [more]
FRIL_CANFA1.421e-1433.57Ferritin light chain OS=Canis familiaris GN=FTL PE... [more]
FRIL1_RAT1.856e-1434.15Ferritin light chain 1 OS=Rattus norvegicus GN=Ftl... [more]
FRIL_RABIT2.424e-1433.06Ferritin light chain OS=Oryctolagus cuniculus GN=F... [more]
FRIL_HORSE3.166e-1433.08Ferritin light chain OS=Equus caballus GN=FTL PE=1... [more]
FRIL1_MOUSE5.400e-1432.52Ferritin light chain 1 OS=Mus musculus GN=Ftl1 PE=... [more]
FRIL_PONAB7.053e-1431.43Ferritin light chain OS=Pongo abelii GN=FTL PE=2 S... [more]
FRIL_HUMAN9.212e-1431.43Ferritin light chain OS=Homo sapiens GN=FTL PE=1 S... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001B20_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001B20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181550 ID=CN181550; Name=CN181550; organism=Citrus sinensis; type=EST; length=750bp
GAACTTTTATTGAACAACTTAATTATATTTATACAATCAGAAGATGGATT
TGGTGCTCTGCTTAAACTATTAGATCCCTTCACACAGTCTGTTACTAAAT
AAAGAAAAAGCACCATCAAAAAGACTATCTAAATGCGACCACACTAATAT
GATAAAGCAAGGAGGCTATTGAGTATTAACTTTGTAGGACTTAACACTGT
TTCAGCTTATTTTTTGTCAACACACTCAACCTCCTGTGGCAGAGATACTT
CAGAACATTTGGCAGAAAAGAGTTGACTAAAGCACAAAGAAATGTAACAA
TATGGTTCTTCATCATGCAGCATCACCCTCGTGGAGAAGCATTTGATCGA
AGTGCCATAATCCGTGGCCTTTCCCAACCATCCTCAGTTGAGAAACATAT
TTTGCGATCTTGTTAATTGCTTCAACCTGCTCACCCAAAAATTCACTCTC
GACAAACTCTGCCATTTGGGGATCATTGTTTCTATCCGCCACACTGTGCA
GGCTCAGAAGCTTCTCGTTTGTTAGCTTCTCCAGGGACAATGCTAGTTCC
ATTGCATACAAGGCATCCCCTTTCTCCGCATGATCAAACTCCGAAGGGGG
CTGCATTATGGAGTGCAGTTTTACTTTTCCACCGCGCAAGTTCTGATACT
CCATAAACTTCTCAGCATGTTCCCTTTCTTCTTCACTGGACTCCTTGAAA
AATTTGGCAAGGCCTCTCAGAGCAATATTATCCCGATCAAAGTACGCATA
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