CN181537

Overview
NameCN181537
Unique NameCN181537
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length763
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2111 contig Csv1_Contig2111:129..891. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN181537 vs. ExPASy Swiss-Prot
Match: UB2E3_MOUSE (Ubiquitin-conjugating enzyme E2 E3 OS=Mus musculus GN=Ube2e3 PE=1 SV=2)

HSP 1 Score: 195.667 bits (496), Expect = 2.372e-49
Identity = 90/145 (62.07%), Postives = 113/145 (77.93%), Query Frame = -3
Query:  261 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRNKYETTARSWTQKYA 695
            ++KRI KEL ++  DPP +CSAGP  ++++ W++TI+GPP S Y GGVF + I F  DYPFKPPKV FRT+++H NINS G ICLDILK+ WSPALTISKVLLSICSLLTD NP DPLV  IA  Y T+R +++  AR WT++YA
Sbjct:   62 SAKRIQKELAEITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFSSDYPFKPPKVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQYLTNRAEHDRIARQWTKRYA 206          
BLAST of CN181537 vs. ExPASy Swiss-Prot
Match: UB2E3_HUMAN (Ubiquitin-conjugating enzyme E2 E3 OS=Homo sapiens GN=UBE2E3 PE=1 SV=1)

HSP 1 Score: 195.667 bits (496), Expect = 2.372e-49
Identity = 90/145 (62.07%), Postives = 113/145 (77.93%), Query Frame = -3
Query:  261 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRNKYETTARSWTQKYA 695
            ++KRI KEL ++  DPP +CSAGP  ++++ W++TI+GPP S Y GGVF + I F  DYPFKPPKV FRT+++H NINS G ICLDILK+ WSPALTISKVLLSICSLLTD NP DPLV  IA  Y T+R +++  AR WT++YA
Sbjct:   62 SAKRIQKELAEITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFSSDYPFKPPKVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQYLTNRAEHDRIARQWTKRYA 206          
BLAST of CN181537 vs. ExPASy Swiss-Prot
Match: UB2E3_BOVIN (Ubiquitin-conjugating enzyme E2 E3 OS=Bos taurus GN=UBE2E3 PE=2 SV=1)

HSP 1 Score: 195.667 bits (496), Expect = 2.372e-49
Identity = 90/145 (62.07%), Postives = 113/145 (77.93%), Query Frame = -3
Query:  261 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRNKYETTARSWTQKYA 695
            ++KRI KEL ++  DPP +CSAGP  ++++ W++TI+GPP S Y GGVF + I F  DYPFKPPKV FRT+++H NINS G ICLDILK+ WSPALTISKVLLSICSLLTD NP DPLV  IA  Y T+R +++  AR WT++YA
Sbjct:   62 SAKRIQKELAEITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFSSDYPFKPPKVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQYLTNRAEHDRIARQWTKRYA 206          
BLAST of CN181537 vs. ExPASy Swiss-Prot
Match: COP10_ARATH (Constitutive photomorphogenesis protein 10 OS=Arabidopsis thaliana GN=COP10 PE=1 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 4.056e-41
Identity = 74/159 (46.54%), Postives = 112/159 (70.44%), Query Frame = -3
Query:  261 GSAASQVE----TMASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRNKYETTARSWTQKYA 725
            G+A+S V     + + KRI +E+ +L  DPP  CSAGP  ++++HW ATI+GP  +PY GG+F + I FP DYPFKPPK+ F+T+++H N+++ G + ++IL++ WSPALTI+KVL +I S+   P P  P +P IA +Y TDR K++  A+ WT ++A
Sbjct:   23 GTASSWVAKTSVSASGKRIQREMAELNIDPPPDCSAGPKGDNLYHWIATIIGPSGTPYEGGIFFLDIIFPSDYPFKPPKLVFKTRIYHCNVDTAGDLSVNILRDSWSPALTITKVLQAIRSIFLKPEPYSPALPVIARLYLTDREKHDEVAKEWTLRFA 181          
BLAST of CN181537 vs. ExPASy Swiss-Prot
Match: UBCB_DICDI (Ubiquitin conjugating enzyme E2 B OS=Dictyostelium discoideum GN=ubcB PE=1 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 1.884e-38
Identity = 76/146 (52.05%), Postives = 101/146 (69.18%), Query Frame = -3
Query:  261 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNIN-SNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRNKYETTARSWTQKYA 695
            A KR+ KE+ D+ K PP+ CSA  V +++  W+AT+ GP  SP+  GVF + I  P DYPFKPP + F TK++HPNI  S+G+IC ++    WSP L I  VL +I S+LTDPNPD+PL  EIA  +KTDRN +  TA+ WT+KYA
Sbjct:    3 AHKRLQKEITDMLKTPPSWCSAHLVDDNLQKWKATVQGPEGSPFEKGVFSMDIDIPADYPFKPPTLKFTTKIYHPNIKTSDGAICAEVFST-WSPQLKILDVLTTIRSILTDPNPDNPLETEIAQQFKTDRNAFNKTAKEWTKKYA 147          
BLAST of CN181537 vs. ExPASy Swiss-Prot
Match: UBC31_ARATH (Probable ubiquitin carrier protein E2 31 OS=Arabidopsis thaliana GN=UBC31 PE=2 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 1.350e-36
Identity = 70/150 (46.67%), Postives = 104/150 (69.33%), Query Frame = -3
Query:  261 QVETMASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRNKYETTARSWTQKYA 710
            +++  A++RI  E + +     +  S G  + +++ W A I GP  +PY GG+F ++I FP DYPFKPPK  F+T ++HPNIN  GSIC++ILK++W+PAL + KVLLSI  LL  PNPDDPLVPEI  ++K +R +++  AR +T ++A
Sbjct:    4 KMDKKAAQRIAMEYRAMISKE-SLFSIGQNSNNIYEWTAVIRGPDGTPYEGGMFNLSIKFPTDYPFKPPKFTFKTPIYHPNINDEGSICMNILKDKWTPALMVEKVLLSILLLLEKPNPDDPLVPEIGQLFKNNRFQFDQRAREFTARHA 152          
BLAST of CN181537 vs. ExPASy Swiss-Prot
Match: UBC3_ARATH (Ubiquitin-conjugating enzyme E2 3 OS=Arabidopsis thaliana GN=UBC3 PE=2 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 1.949e-35
Identity = 68/135 (50.37%), Postives = 90/135 (66.67%), Query Frame = -3
Query:  297 TMASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRNKY 701
            T A KR++ + K LQKDPP   S  P   ++ HW A I GP D+P+ GG F +T+HF  DYP KPP V F +++FHPNI ++GSICLDIL+ QWSP   ++ VL SI SLL DPNPD P   E A ++  ++ +Y
Sbjct:    3 TPAKKRLMWDFKRLQKDPPVGISGAPQDNNIMHWNALIFGPEDTPWDGGTFKLTLHFTEDYPNKPPIVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAVLTSIQSLLCDPNPDSPANAEAARLFSENKREY 137          
BLAST of CN181537 vs. ExPASy Swiss-Prot
Match: UBC36_ARATH (Ubiquitin carrier protein E2 36 OS=Arabidopsis thaliana GN=UBC36 PE=1 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 2.546e-35
Identity = 72/145 (49.66%), Postives = 96/145 (66.21%), Query Frame = -3
Query:  255 KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRNKYETTARSWTQKYAMG 689
            +RI+KE + L  +P    SA P  E+M ++   I+GP  SPY GGVF + +  P +YP   PKV F TK++HPNI+  G ICLDILK++WSPAL I  VLLSI +LL+ PNPDDPL   IA  +K++  +   TA+ WT+ YA G
Sbjct:    8 RRIIKETQRLLSEPAPGISASPSEENMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKSNEAEAVETAKEWTRLYASG 152          
BLAST of CN181537 vs. ExPASy Swiss-Prot
Match: UBC35_ARATH (Ubiquitin carrier protein E2 35 OS=Arabidopsis thaliana GN=UBC35 PE=1 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 5.672e-35
Identity = 71/145 (48.97%), Postives = 96/145 (66.21%), Query Frame = -3
Query:  255 KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRNKYETTARSWTQKYAMG 689
            +RI+KE + L  +P    SA P  ++M ++   I+GP  SPY GGVF + +  P +YP   PKV F TK++HPNI+  G ICLDILK++WSPAL I  VLLSI +LL+ PNPDDPL   IA  +K++  +   TA+ WT+ YA G
Sbjct:    8 RRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKSNEAEAVDTAKEWTRLYASG 152          
BLAST of CN181537 vs. ExPASy Swiss-Prot
Match: UBE2N_DICDI (Probable ubiquitin-conjugating enzyme E2 N OS=Dictyostelium discoideum GN=ube2n PE=3 SV=2)

HSP 1 Score: 146.747 bits (369), Expect = 1.264e-34
Identity = 70/143 (48.95%), Postives = 94/143 (65.73%), Query Frame = -3
Query:  261 KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRNKYETTARSWTQKYA 689
            KRI+KE + L  +P    SA P  ++  +++  I GP DSP+ GGVF + +    DYP   PKV F TK++HPNI+  G ICLDILK++WSPAL I  VLLSI +LL+ PNPDDPL  ++A  +KT+  +    AR WT+ YA
Sbjct:    6 KRIIKETQRLMTEPAPGISATPATDNFRYFKVAISGPLDSPFEGGVFNLELFLTDDYPMSAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEHWKTNEKEAMARAREWTRLYA 148          
The following BLAST results are available for this feature:
BLAST of CN181537 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 267
Match NameE-valueIdentityDescription
UB2E3_MOUSE2.372e-4962.07Ubiquitin-conjugating enzyme E2 E3 OS=Mus musculus... [more]
UB2E3_HUMAN2.372e-4962.07Ubiquitin-conjugating enzyme E2 E3 OS=Homo sapiens... [more]
UB2E3_BOVIN2.372e-4962.07Ubiquitin-conjugating enzyme E2 E3 OS=Bos taurus G... [more]
COP10_ARATH4.056e-4146.54Constitutive photomorphogenesis protein 10 OS=Arab... [more]
UBCB_DICDI1.884e-3852.05Ubiquitin conjugating enzyme E2 B OS=Dictyostelium... [more]
UBC31_ARATH1.350e-3646.67Probable ubiquitin carrier protein E2 31 OS=Arabid... [more]
UBC3_ARATH1.949e-3550.37Ubiquitin-conjugating enzyme E2 3 OS=Arabidopsis t... [more]
UBC36_ARATH2.546e-3549.66Ubiquitin carrier protein E2 36 OS=Arabidopsis tha... [more]
UBC35_ARATH5.672e-3548.97Ubiquitin carrier protein E2 35 OS=Arabidopsis tha... [more]
UBE2N_DICDI1.264e-3448.95Probable ubiquitin-conjugating enzyme E2 N OS=Dict... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS04_0001B12_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001B12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181537 ID=CN181537; Name=CN181537; organism=Citrus sinensis; type=EST; length=763bp
CCTTTTATCATTCAGAATGGACGTACAAATTTGGCTGACCAAGTGACATT
ATCAGAACACATTTGATTGACCAAAGTGACATTATCCATACAACAATTAA
GAAGCAACCCGTTTCTCCTTTCCAATTCGGGGGATGTAGTGGACCTTTCT
TATGGTCCACTTTTTAGGATTGAACAGACAGAATATTCATACATTAACTC
GAAACCAGAATTAAAAAGAAAAGGAACCCCCTCACACACCATAACCCAGG
TTTAGCCCATGGCATACTTCTGGGTCCAGCTCCTTGCAGTTGTCTCGTAC
TTGTTCCTGTCGGTCTTGTACATGTGAGCAATTTCTGGTACCAACGGATC
ATCGGGATTTGGATCCGTCAATAATGAACAGATTGATAGCAACACCTTGG
AAATGGTAAGAGCAGGACTCCATTGTTCCTTCAAGATGTCAAGGCAAATG
CTCCCATTGCTATTTATGTTAGGATGAAATACCTTTGTCCTGAATGCTAC
CTTGGGAGGCTTGAATGGATAGTCTGGGGGAAAATGGATGGTAACTAGAA
AAACACCCCCAGCATACGGACTATCTGGAGGACCCATGATTGTCGCCTGC
CAATGAAACATGTCTTCAGCAACAGGACCGGCACTGCATGATGTAGGAGG
ATCCTTCTGCAAATCTTTGAGCTCCTTCAAGATCCGTTTCGACGCCATAG
TTTCAACCTGAGAAGCAGCAGATCCTCCTGATTTTGCCTTGCAATATGTG
GATTCGTGAGGGA
back to top