CN181522

Overview
NameCN181522
Unique NameCN181522
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length617
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN181522 vs. ExPASy Swiss-Prot
Match: EXPA9_ORYSJ (Expansin-A9 OS=Oryza sativa subsp. japonica GN=EXPA9 PE=2 SV=2)

HSP 1 Score: 222.631 bits (566), Expect = 1.223e-57
Identity = 108/183 (59.02%), Postives = 133/183 (72.68%), Query Frame = 2
Query:   56 VILSLVCLMWVADARLPGDYSGGPWQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFEIKC-ANEPAWCHSGSPSILVTATNFCPPNYALPSDNGGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVSYRRVPCRKKGGIRFTINGFRYFNLVLVTNVAGAGDI 601
            + LSL C      +RL G+ +   W SA ATFYGGSDASGTMGG+CGYGN+YS GYG NT ALS+AL+ +G SCGAC+ + C A+   WC +G+ S+ VTATN+CPPNY+   D GGWCNPPR HFD++ P +  IA Y +GIVPV Y R PCR+ GGIRF I G  Y+ LVLVTNVAG+G +
Sbjct:    9 LFLSLCCA-----SRLRGE-AAQQWTSATATFYGGSDASGTMGGSCGYGNMYSAGYGTNTTALSSALYGDGASCGACYLVTCDASATRWCKNGT-SVTVTATNYCPPNYSESGDAGGWCNPPRRHFDMSQPAWEAIAVYSSGIVPVRYARTPCRRVGGIRFGIAGHDYYELVLVTNVAGSGAV 184          
BLAST of CN181522 vs. ExPASy Swiss-Prot
Match: EXPA7_ARATH (Expansin-A7 OS=Arabidopsis thaliana GN=EXPA7 PE=2 SV=1)

HSP 1 Score: 221.09 bits (562), Expect = 3.557e-57
Identity = 100/165 (60.61%), Postives = 123/165 (74.55%), Query Frame = 2
Query:  107 GDYSGGPWQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFEIKCANEPAWCHSGSPSILVTATNFCPPNYALPSDNGGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVSYRRVPCRKKGGIRFTINGFRYFNLVLVTNVAGAGDI 601
            G Y  GPW+ AHATFYG      TMGGACGYGNL++ GYG++TAALST LFN+G  CG CF+I C+  P  C+SG  S +VTATN CPPN+   S+ GGWCNPPR HFD+A P F+K+A +RAGI+PV+YRRVPC++ GG+RF   G  Y+ L+ V NV GAGDI
Sbjct:   30 GYYRPGPWRYAHATFYGDETGGETMGGACGYGNLFNSGYGLSTAALSTTLFNDGYGCGQCFQITCSKSPH-CYSGK-STVVTATNLCPPNWYQDSNAGGWCNPPRTHFDMAKPAFMKLAYWRAGIIPVAYRRVPCQRSGGMRFQFQGNSYWLLIFVMNVGGAGDI 192          
BLAST of CN181522 vs. ExPASy Swiss-Prot
Match: EXP30_ORYSJ (Putative expansin-A30 OS=Oryza sativa subsp. japonica GN=EXPA30 PE=3 SV=1)

HSP 1 Score: 219.164 bits (557), Expect = 1.352e-56
Identity = 105/186 (56.45%), Postives = 129/186 (69.35%), Query Frame = 2
Query:   50 AGVILSLVCLMWVADARLPGDYSGGPWQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFEIKCANEPAWCHSGSPSILVTATNFCPPNYALPSDNGG--WCNPPRPHFDLAMPMFLKIAEYRAGIVPVSYRRVPCRKKGGIRFTINGFRYFNLVLVTNVAGAGDI 601
            A VI+SL       DA+    +    W  AHATFYG   AS TMGGACGYGNLY+ GYG +TAALST LF +G  CG C++++C    A C+ GSP+I VTATN CPPN+A   D GG  WCNPPR HFDL+ P F+++A++RAGIVPV YRRVPC + GG+RF + G  Y+ L  V NVAGAGD+
Sbjct:   15 AAVIISLAGAATTVDAK----FRAMQWTPAHATFYGDETASETMGGACGYGNLYASGYGTDTAALSTTLFKDGYGCGTCYQMRCVGT-ASCYRGSPAITVTATNLCPPNWAEDPDRGGGGWCNPPRAHFDLSKPAFMRMADWRAGIVPVMYRRVPCARAGGLRFALQGNPYWLLAYVMNVAGAGDV 195          
BLAST of CN181522 vs. ExPASy Swiss-Prot
Match: EXP19_ORYSJ (Expansin-A19 OS=Oryza sativa subsp. japonica GN=EXPA19 PE=2 SV=1)

HSP 1 Score: 214.542 bits (545), Expect = 3.329e-55
Identity = 100/165 (60.61%), Postives = 120/165 (72.73%), Query Frame = 2
Query:  128 WQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFEIKC--ANEPAWCHSGSPSILVTATNFCPPNYALPSDNGGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVSYRRVPCRKKGGIRFTINGFRYFNLVLVTNVAGAGDILRVNV 616
            W    ATFYGG+D SGTMGGACGYGNLY QGYG+N AALST LFN+G SCG C+ I C  +  P WC  G  +I VT TN+CPPNY LP   GGWCN  RPHFD++ P +  I  Y AGI+P+ Y++V C + GG+RFTINGF YF LVLVTN+AG+G I  ++V
Sbjct:   23 WLPGTATFYGGADGSGTMGGACGYGNLYDQGYGINNAALSTPLFNDGASCGQCYLIICDYSKAPDWCKLGK-AITVTGTNYCPPNYDLPY--GGWCNATRPHFDMSQPAWENIGIYNAGIIPILYQQVKCWRYGGVRFTINGFNYFELVLVTNMAGSGSIASMSV 184          
BLAST of CN181522 vs. ExPASy Swiss-Prot
Match: EXP26_ARATH (Putative expansin-A26 OS=Arabidopsis thaliana GN=EXPA26 PE=3 SV=2)

HSP 1 Score: 210.69 bits (535), Expect = 4.808e-54
Identity = 97/163 (59.51%), Postives = 118/163 (72.39%), Query Frame = 2
Query:  128 WQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFEIKCANEPAWCHSGSPSILVTATNFCPPNYALPSDNGGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVSYRRVPCRKKGGIRFTINGFRYFNLVLVTNVAGAGDILRVNV 616
            W  A ATFYG      T  GACGYGNL+ QGYG+ TAALSTALFN+G +CGAC+EI C  +P WC  G  S+ +TATNFCP NY+  +D   WCNPP+ HFDL++ MFLKIA+Y+AG+VPV YRR+PC K GG++F   G  YF +VL+ NV GAGDI  V V
Sbjct:   58 WYDARATFYGDIHGGDTQQGACGYGNLFRQGYGLATAALSTALFNDGYTCGACYEIMCTRDPQWCLPG--SVKITATNFCPANYSKTTDL--WCNPPQKHFDLSLAMFLKIAKYKAGVVPVRYRRIPCSKTGGVKFETKGNPYFLMVLIYNVGGAGDIKYVQV 216          
BLAST of CN181522 vs. ExPASy Swiss-Prot
Match: EXP22_ARATH (Expansin-A22 OS=Arabidopsis thaliana GN=EXPA22 PE=2 SV=2)

HSP 1 Score: 210.69 bits (535), Expect = 4.808e-54
Identity = 97/163 (59.51%), Postives = 118/163 (72.39%), Query Frame = 2
Query:  128 WQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFEIKCANEPAWCHSGSPSILVTATNFCPPNYALPSDNGGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVSYRRVPCRKKGGIRFTINGFRYFNLVLVTNVAGAGDILRVNV 616
            W  A ATFYG      T  GACGYGNL+ QGYG+ TAALSTALFN+G +CGAC+EI C  +P WC  G  S+ +TATNFCP NY+  +D   WCNPP+ HFDL++ MFLKIA+Y+AG+VPV YRR+PC K GG++F   G  YF +VL+ NV GAGDI  V V
Sbjct:   52 WYDARATFYGDIHGGDTQQGACGYGNLFRQGYGLATAALSTALFNDGYTCGACYEIMCTRDPQWCLPG--SVKITATNFCPANYSKTTDL--WCNPPQKHFDLSLAMFLKIAKYKAGVVPVRYRRIPCSKTGGVKFETKGNPYFLMVLIYNVGGAGDIKYVQV 210          
BLAST of CN181522 vs. ExPASy Swiss-Prot
Match: EXP18_ORYSJ (Expansin-A18 OS=Oryza sativa subsp. japonica GN=EXPA18 PE=2 SV=2)

HSP 1 Score: 210.69 bits (535), Expect = 4.808e-54
Identity = 100/165 (60.61%), Postives = 119/165 (72.12%), Query Frame = 2
Query:  128 WQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFEIKCANE--PAWCHSGSPSILVTATNFCPPNYALPSDNGGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVSYRRVPCRKKGGIRFTINGFRYFNLVLVTNVAGAGDILRVNV 616
            W    ATFYGG+D SGTMGGACGYGNLY QGYG+N AALST LFNNG SCG C+ I C  +  P+ C  G+ +I VT TNFCPPNY LP   GGWCN  RPHFD++ P +  I  Y AGIVP+ Y++V C + GG+RFTI G  YF LVLVTN+AG+G I  ++V
Sbjct:   23 WLQGTATFYGGADGSGTMGGACGYGNLYDQGYGINNAALSTPLFNNGASCGQCYLIICNYDKAPSGCRMGT-AITVTGTNFCPPNYDLP--YGGWCNTTRPHFDMSQPAWENIGIYSAGIVPILYQQVKCWRSGGVRFTITGLNYFELVLVTNMAGSGSIASMSV 184          
BLAST of CN181522 vs. ExPASy Swiss-Prot
Match: EXP23_ARATH (Expansin-A23 OS=Arabidopsis thaliana GN=EXPA23 PE=2 SV=2)

HSP 1 Score: 207.994 bits (528), Expect = 3.116e-53
Identity = 93/163 (57.06%), Postives = 117/163 (71.78%), Query Frame = 2
Query:  128 WQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFEIKCANEPAWCHSGSPSILVTATNFCPPNYALPSDNGGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVSYRRVPCRKKGGIRFTINGFRYFNLVLVTNVAGAGDILRVNV 616
            W  A ATFYG      T  GACGYG+L+ QGYG+ TAALSTALFN G +CGAC++I C N+P WC  G  S+ +TATNFCPP+Y+     G WCNPP+ HFDL++PMFLKIA+Y+AG+VPV YRR+ C + GG++F   G  YF ++L  NV GAGDI  + V
Sbjct:   48 WYDARATFYGDIHGGETQQGACGYGDLFKQGYGLETAALSTALFNEGYTCGACYQIMCVNDPQWCLPG--SVKITATNFCPPDYS--KTEGVWCNPPQKHFDLSLPMFLKIAQYKAGVVPVKYRRISCARTGGVKFETKGNPYFLMILPYNVGGAGDIKLMQV 206          
BLAST of CN181522 vs. ExPASy Swiss-Prot
Match: EXP24_ARATH (Expansin-A24 OS=Arabidopsis thaliana GN=EXPA24 PE=2 SV=2)

HSP 1 Score: 207.223 bits (526), Expect = 5.315e-53
Identity = 94/163 (57.67%), Postives = 118/163 (72.39%), Query Frame = 2
Query:  128 WQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFEIKCANEPAWCHSGSPSILVTATNFCPPNYALPSDNGGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVSYRRVPCRKKGGIRFTINGFRYFNLVLVTNVAGAGDILRVNV 616
            W    ATFYG  +   T  GACGYG+L+ QGYG+ TAALSTALFNNG  CGAC+EI C + P WC  G  SI +TATNFCPP++  P+DN  WCNPP+ HFDL+ PMFLKIA+Y+AG+VPV +RRVPC K GG++F I G  +F ++L  NV GAG +  + +
Sbjct:   90 WGHGRATFYGDINGGETQQGACGYGDLHKQGYGLETAALSTALFNNGSRCGACYEIMCEHAPQWCLPG--SIKITATNFCPPDFTKPNDN--WCNPPQKHFDLSQPMFLKIAKYKAGVVPVKFRRVPCAKIGGVKFEIKGNPHFLMILPYNVGGAGAVRAMQI 248          
BLAST of CN181522 vs. ExPASy Swiss-Prot
Match: EXP25_ARATH (Expansin-A25 OS=Arabidopsis thaliana GN=EXPA25 PE=2 SV=2)

HSP 1 Score: 205.297 bits (521), Expect = 2.020e-52
Identity = 92/163 (56.44%), Postives = 117/163 (71.78%), Query Frame = 2
Query:  128 WQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFEIKCANEPAWCHSGSPSILVTATNFCPPNYALPSDNGGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVSYRRVPCRKKGGIRFTINGFRYFNLVLVTNVAGAGDILRVNV 616
            W  A ATFYG      T  GACGYG+L+ QGYG+ TAALSTALFN G +CGAC++I C ++P WC  G+  I +TATNFCPP+Y+     G WCNPP+ HFDL++PMFLKIA+Y+AG+VPV YRR+ C + GG++F   G  YF ++L  NV GAGDI  + V
Sbjct:   55 WYDARATFYGDIHGGETQQGACGYGDLFKQGYGLETAALSTALFNEGYTCGACYQIMCVHDPQWCLPGT--IKITATNFCPPDYS--KTEGVWCNPPQKHFDLSLPMFLKIAQYKAGVVPVKYRRISCARTGGVKFETKGNPYFLMILPYNVGGAGDIKLMQV 213          
The following BLAST results are available for this feature:
BLAST of CN181522 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 91
Match NameE-valueIdentityDescription
EXPA9_ORYSJ1.223e-5759.02Expansin-A9 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXPA7_ARATH3.557e-5760.61Expansin-A7 OS=Arabidopsis thaliana GN=EXPA7 PE=2 ... [more]
EXP30_ORYSJ1.352e-5656.45Putative expansin-A30 OS=Oryza sativa subsp. japon... [more]
EXP19_ORYSJ3.329e-5560.61Expansin-A19 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP26_ARATH4.808e-5459.51Putative expansin-A26 OS=Arabidopsis thaliana GN=E... [more]
EXP22_ARATH4.808e-5459.51Expansin-A22 OS=Arabidopsis thaliana GN=EXPA22 PE=... [more]
EXP18_ORYSJ4.808e-5460.61Expansin-A18 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP23_ARATH3.116e-5357.06Expansin-A23 OS=Arabidopsis thaliana GN=EXPA23 PE=... [more]
EXP24_ARATH5.315e-5357.67Expansin-A24 OS=Arabidopsis thaliana GN=EXPA24 PE=... [more]
EXP25_ARATH2.020e-5256.44Expansin-A25 OS=Arabidopsis thaliana GN=EXPA25 PE=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001B04_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001B04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181522 ID=CN181522; Name=CN181522; organism=Citrus sinensis; type=EST; length=617bp
GAGGTTTGTGAGTGAAGAGAATAAAGAAACGATGGCGGTGGTGAATTGGG
CTGGCGTTATCCTCTCTTTAGTATGCTTAATGTGGGTGGCTGATGCAAGA
CTCCCTGGCGATTACTCCGGTGGCCCATGGCAAAGCGCCCATGCCACCTT
TTACGGCGGCTCTGACGCCTCCGGCACCATGGGAGGAGCGTGCGGTTACG
GTAACTTGTACAGCCAGGGCTACGGCGTGAATACGGCGGCGCTGAGCACG
GCGCTGTTCAACAATGGCTTGAGCTGCGGTGCTTGCTTTGAGATCAAGTG
TGCAAACGAACCCGCGTGGTGTCACTCCGGGAGCCCTTCCATTTTGGTTA
CCGCTACAAACTTTTGCCCGCCCAATTACGCACTCCCAAGTGACAATGGC
GGCTGGTGTAACCCTCCTCGCCCTCATTTTGACCTCGCCATGCCCATGTT
CCTCAAGATTGCTGAGTACCGCGCCGGCATCGTCCCCGTCTCCTACCGCC
GGGTACCATGCCGCAAGAAGGGAGGAATCAGGTTCACAATAAACGGGTTC
CGCTACTTCAACTTGGTTCTGGTCACCAACGTGGCGGGTGCAGGGGATAT
CCTGAGGGTGAACGTGA
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