CN181522

Overview
NameCN181522
Unique NameCN181522
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length617
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN181522 vs. ExPASy Swiss-Prot
Match: EXP17_ORYSJ (Expansin-A17 OS=Oryza sativa subsp. japonica GN=EXPA17 PE=2 SV=2)

HSP 1 Score: 196.823 bits (499), Expect = 7.184e-50
Identity = 91/170 (53.53%), Postives = 114/170 (67.06%), Query Frame = 2
Query:  113 YSGGPWQSAHATFYGGSDASGT-MGGACGY-GNLYSQGYGVNTAALSTALFNNGLSCGACFEIKCANEPAWCHSGSPSILVTATNFCPPNYALPSDNGGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVSYRRVPCRKKGGIRFTINGFRYFNLVLVTNVAGAGDILRVNV 616
            Y    W    ATFYG     G   GGACGY  N     Y   TAALST LF +G  CG C+E++C   P WC+ GSPS+++T TN CPPN+ LP+D+GGWCNPPR HFD+A P FLK+A+  AGIVPV YRRVPC++ GG+RF + G  Y+ L+ V NV GAGD+  ++V
Sbjct:   47 YKTSDWHDGSATFYGDPSGMGDDFGGACGYVSNDIVSLYSTKTAALSTPLFADGNGCGQCYELRCVKSP-WCNPGSPSVVITGTNLCPPNWYLPNDDGGWCNPPRHHFDMAPPSFLKLAQRVAGIVPVQYRRVPCQRTGGVRFCLQGNHYWLLLYVMNVGGAGDVSSLSV 215          
BLAST of CN181522 vs. ExPASy Swiss-Prot
Match: EXP20_ORYSJ (Expansin-A20 OS=Oryza sativa subsp. japonica GN=EXPA20 PE=2 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 5.692e-47
Identity = 91/165 (55.15%), Postives = 111/165 (67.27%), Query Frame = 2
Query:  128 WQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFEIKC--ANEPAWCHSGSPSILVTATNFCPPNYALPSDNGGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVSYRRVPCRKKGGIRFTINGFRYFNLVLVTNVAGAGDILRVNV 616
            W    ATFYGG+D SGTMGGACGYGNLY Q YG+N AALST LFN+G SCG C+ I C     P WC  G  +I VT TN+           GGWCN  RP+FD++ P +  I  Y AGIVP+ Y++V C + GG+RF INGF YF LVLVTN+AG+G I+ ++V
Sbjct:   23 WLPGTATFYGGADGSGTMGGACGYGNLYDQRYGINNAALSTPLFNDGASCGQCYLIICDYGKAPDWCKLGK-AITVTGTNY-----------GGWCNATRPYFDMSQPAWENIGIYSAGIVPILYQQVKCWRYGGVRFIINGFNYFELVLVTNMAGSGSIVSMSV 175          
BLAST of CN181522 vs. ExPASy Swiss-Prot
Match: EXP13_ARATH (Expansin-A13 OS=Arabidopsis thaliana GN=EXPA13 PE=2 SV=2)

HSP 1 Score: 184.111 bits (466), Expect = 4.819e-46
Identity = 84/163 (51.53%), Postives = 110/163 (67.48%), Query Frame = 2
Query:  128 WQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFEIKCANEPAWCHSGSPSILVTATNFCPPNYALPSDNGGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVSYRRVPCRKKGGIRFTINGFRYFNLVLVTNVAGAGDILRVNV 616
            W+ A AT+Y  ++    +GGACGYG+L   GYG+ T  LS  LF  G  CGACFE++C ++  WC  G+ SI++TATNFC PNY    D GG CNPP  HF L +  F KIA ++AG +PV YRR+ CRK+G +RFT++G   F  VL+TNVAG+GDI  V +
Sbjct:   40 WRPARATYYAATNPRDAVGGACGYGDLVKSGYGMATVGLSETLFERGQICGACFELRCVDDLRWCIPGT-SIILTATNFCAPNYGFDPDGGGHCNPPNKHFVLPIEAFEKIAIWKAGNMPVQYRRINCRKEGSMRFTVDGGGIFISVLITNVAGSGDIAAVKI 201          
BLAST of CN181522 vs. ExPASy Swiss-Prot
Match: EXP10_ORYSJ (Expansin-A10 OS=Oryza sativa subsp. japonica GN=EXPA10 PE=2 SV=2)

HSP 1 Score: 180.259 bits (456), Expect = 6.958e-45
Identity = 82/163 (50.31%), Postives = 114/163 (69.94%), Query Frame = 2
Query:  128 WQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFEIKCANEPAWCHSGSPSILVTATNFCPPNYALPSDNGGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVSYRRVPCRKKGGIRFTINGFRYFNLVLVTNVAGAGDILRVNV 616
            W+SA A++Y  +D    +GGACG+G+L   GYG+ T  LSTALF  G +CG C+E+KC ++  +C  G+ SI+VTATNFC PN+ LP+D GG CNPP  HF L +  F KIA ++AG++P+ YRRV C + GG+RF + G  +F  VL++NV GAGD+  V +
Sbjct:   33 WRSAKASYYA-ADPEDAIGGACGFGDLGKHGYGMATVGLSTALFERGAACGGCYEVKCVDDLKYCLPGT-SIVVTATNFCAPNFGLPADAGGVCNPPNHHFLLPIQSFEKIALWKAGVMPIQYRRVNCLRDGGVRFAVAGRSFFLTVLISNVGGAGDVRSVKI 193          
BLAST of CN181522 vs. ExPASy Swiss-Prot
Match: EXP12_ARATH (Expansin-A12 OS=Arabidopsis thaliana GN=EXPA12 PE=2 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 5.890e-44
Identity = 88/186 (47.31%), Postives = 121/186 (65.05%), Query Frame = 2
Query:   68 LVCLMWVADARLPGDYSGGPWQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFEIKC--ANEPAWCHSGSPSILVTATNFCPPNYALPSDNGGWCNPPRPHFDLAMPMFLKIAEY-RAGIVPVSYRRVPCRKKGGIRFTINGFRYFNLVLVTNVAGAGDILRVNV 616
            LV ++ +      G  S G W  AHAT+YG +D+  ++GGACGY N Y  G+G +TAALS  LF +G SCG C++++C    +P WC  G+ ++ VTATNFCP N     +N GWCN PR HFD++ P F +IA     GIVPV YRRV C+++GG+RFT+ G   FN+V+++NV G G +  V V
Sbjct:    8 LVTVILLVSTLSVGMCSNG-WIRAHATYYGVNDSPASLGGACGYDNPYHAGFGAHTAALSGELFRSGESCGGCYQVRCDFPADPKWCLRGA-AVTVTATNFCPTN-----NNNGWCNLPRHHFDMSSPAFFRIARRGNEGIVPVFYRRVGCKRRGGVRFTMRGQGNFNMVMISNVGGGGSVRSVAV 186          
BLAST of CN181522 vs. ExPASy Swiss-Prot
Match: EXP20_ARATH (Expansin-A20 OS=Arabidopsis thaliana GN=EXPA20 PE=2 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 1.451e-42
Identity = 84/184 (45.65%), Postives = 117/184 (63.59%), Query Frame = 2
Query:   71 VCLMWVADARLPGDYSGGPWQSAHATFYGGSDASGTM--GGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFEIKCANEPAWCHSGSPSILVTATNFCPPNYALPSDNGGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVSYRRVPCRKKGGIRFTINGFRYFNLVLVTNVAGAGDILRVNV 616
            +CL ++   RL    +   W+ A AT     D S ++  GGACGYG+L    +   +A LS  LFN G SCGAC E++C N   WC  GSPS++VTAT+FCPPN  L SD GGWCN P+ H +L+   F  IAE RA ++P+ YRRV C ++GG+RF+++G  +F  VL++NV   G+++ V V
Sbjct:   10 LCLFFIL-CRLFQATAEDDWKIATATLSRDRDGSSSVATGGACGYGDLRQSSFAGYSAGLSGKLFNRGSSCGACLEVRCVNHIRWCLQGSPSVVVTATDFCPPNSGLSSDYGGWCNFPKEHLELSHAAFTGIAETRAEMIPIQYRRVKCGRRGGLRFSLSGSSHFFQVLISNVGLDGEVVGVKV 192          
BLAST of CN181522 vs. ExPASy Swiss-Prot
Match: EXP21_ARATH (Expansin-A21 OS=Arabidopsis thaliana GN=EXPA21 PE=2 SV=3)

HSP 1 Score: 172.17 bits (435), Expect = 1.895e-42
Identity = 86/163 (52.76%), Postives = 107/163 (65.64%), Query Frame = 2
Query:  128 WQSAHATFYGGSDASGT-MGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFEIKCANEPAWCHSGSPSILVTATNFCPPNYALPSDNGGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVSYRRVPCRKKGGIRFTINGFRYFNLVLVTNVAGAGDILRVN 613
            W  A A +YG     GT + GACGYG+L   GYG+ TAALSTALFN+G SCGAC+EI C+  P  C SGS  I +TAT+ CPP  A       WC  P  HFDL++PMF+KIA+ +A +VPV YRRVPC K GG++F + G      +L  NV GAGDI+ V+
Sbjct:   45 WYDARAAYYGDIHGGGTELEGACGYGDLNKHGYGLATAALSTALFNSGASCGACYEIMCSPNPQGCLSGS--IKITATDLCPPGSA-------WCYLPNKHFDLSLPMFIKIAQVKAKMVPVRYRRVPCAKTGGVKFEVKGNPNILTILPYNVGGAGDIIAVS 198          
BLAST of CN181522 vs. ExPASy Swiss-Prot
Match: EXP16_ORYSJ (Expansin-A16 OS=Oryza sativa subsp. japonica GN=EXPA16 PE=2 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 1.358e-40
Identity = 75/145 (51.72%), Postives = 99/145 (68.28%), Query Frame = 2
Query:  182 GGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFEIKCANEPAWCHSGSPSILVTATNFCPPNYALPSDNGGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVSYRRVPCRKKGGIRFTINGFRYFNLVLVTNVAGAGDILRVNV 616
            GGACGYG+L    YG  TA +S ALF  G +CG C+E++C N   WC  GSP+++VTAT+FC PN  L  D GGWCN P+ HF+++   FL++A+ +A IVPV +RRV C + GG+RFTI G   F  VL+TNVA  G++  V V
Sbjct:   52 GGACGYGDLDIFRYGRYTAGVSGALFGRGSACGGCYEVRCVNHVLWCLRGSPTVVVTATDFCAPNLGLSDDYGGWCNFPKEHFEMSEAAFLRVAKAKADIVPVQFRRVSCDRAGGMRFTITGGASFLQVLITNVAADGEVAAVKV 196          
BLAST of CN181522 vs. ExPASy Swiss-Prot
Match: EXP26_ORYSJ (Expansin-A26 OS=Oryza sativa subsp. japonica GN=EXPA26 PE=2 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 7.451e-39
Identity = 86/171 (50.29%), Postives = 109/171 (63.74%), Query Frame = 2
Query:  107 GDYSGGPWQSAHATFYGGSDASGTM-GGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFEIKCANEPAWCHSGSPSILVTATNFCPPNYALPSDNGGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVSYRRVPCRKKGGIRFTINGFRYFNLVLVTNVAGAGDILRVNV 616
            G Y  GPW   HATFYGG DASGT  GGACGY +  + GYG  TAA+S ALF+NG  CGAC+E+K             +++VTATN  PP       NG        HFDL MP FL IAE + G+VPVSYR+V C ++GGI++TI G   +N+V+V NV GAGD++++ V
Sbjct:   75 GRYKCGPWVDGHATFYGGRDASGTTEGGACGYKD--ADGYGAMTAAVSPALFDNGAGCGACYELK--------GDSGKTVVVTATNQAPPPV-----NG----MKGEHFDLTMPAFLSIAEEKLGVVPVSYRKVACVRQGGIKYTITGNPSYNMVMVKNVGGAGDVVKLTV 226          
BLAST of CN181522 vs. ExPASy Swiss-Prot
Match: EXB14_ORYSJ (Putative expansin-B14 OS=Oryza sativa subsp. japonica GN=EXPB14 PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 6.558e-19
Identity = 60/174 (34.48%), Postives = 90/174 (51.72%), Query Frame = 2
Query:  128 WQSAHATFYGGSDASGTMGGACGY-GNLYSQGYGVNTAALSTALFNNGLSCGACFEIKCANEPAWCHSGSPSILVTATNFCPPNYALPSDNGGWCNPPRPHFDLAMPMFLKIAE-------YRAGIVPVSYRRVPCRKKG---GIRFTINGFRYFNLVLVTNVAGAGDILRVNV 616
            W    AT+YG ++ SGT GGACGY G++    +    AA S +++ +G  CG+C+++KC+  P+   SG P + V  T+ CP         GG C     HFDL+   F  +A+         AG +PV Y RVPC+ +G     R      +Y+  VLV +  G GD+  V++
Sbjct:   38 WSIGGATWYGPANGSGTDGGACGYQGDVGQPPFNSMIAAGSPSIYESGKGCGSCYQVKCSGNPSC--SGKP-VTVVLTDLCP---------GGACLEEPVHFDLSGTAFGAMAKPGQDDQLRNAGKLPVQYARVPCKWQGVDIAFRVDAGSNQYYLAVLVEDEDGDGDLSAVDL 199          
The following BLAST results are available for this feature:
BLAST of CN181522 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 91
Match NameE-valueIdentityDescription
EXP17_ORYSJ7.184e-5053.53Expansin-A17 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP20_ORYSJ5.692e-4755.15Expansin-A20 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP13_ARATH4.819e-4651.53Expansin-A13 OS=Arabidopsis thaliana GN=EXPA13 PE=... [more]
EXP10_ORYSJ6.958e-4550.31Expansin-A10 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP12_ARATH5.890e-4447.31Expansin-A12 OS=Arabidopsis thaliana GN=EXPA12 PE=... [more]
EXP20_ARATH1.451e-4245.65Expansin-A20 OS=Arabidopsis thaliana GN=EXPA20 PE=... [more]
EXP21_ARATH1.895e-4252.76Expansin-A21 OS=Arabidopsis thaliana GN=EXPA21 PE=... [more]
EXP16_ORYSJ1.358e-4051.72Expansin-A16 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP26_ORYSJ7.451e-3950.29Expansin-A26 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXB14_ORYSJ6.558e-1934.48Putative expansin-B14 OS=Oryza sativa subsp. japon... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS04_0001B04_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001B04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181522 ID=CN181522; Name=CN181522; organism=Citrus sinensis; type=EST; length=617bp
GAGGTTTGTGAGTGAAGAGAATAAAGAAACGATGGCGGTGGTGAATTGGG
CTGGCGTTATCCTCTCTTTAGTATGCTTAATGTGGGTGGCTGATGCAAGA
CTCCCTGGCGATTACTCCGGTGGCCCATGGCAAAGCGCCCATGCCACCTT
TTACGGCGGCTCTGACGCCTCCGGCACCATGGGAGGAGCGTGCGGTTACG
GTAACTTGTACAGCCAGGGCTACGGCGTGAATACGGCGGCGCTGAGCACG
GCGCTGTTCAACAATGGCTTGAGCTGCGGTGCTTGCTTTGAGATCAAGTG
TGCAAACGAACCCGCGTGGTGTCACTCCGGGAGCCCTTCCATTTTGGTTA
CCGCTACAAACTTTTGCCCGCCCAATTACGCACTCCCAAGTGACAATGGC
GGCTGGTGTAACCCTCCTCGCCCTCATTTTGACCTCGCCATGCCCATGTT
CCTCAAGATTGCTGAGTACCGCGCCGGCATCGTCCCCGTCTCCTACCGCC
GGGTACCATGCCGCAAGAAGGGAGGAATCAGGTTCACAATAAACGGGTTC
CGCTACTTCAACTTGGTTCTGGTCACCAACGTGGCGGGTGCAGGGGATAT
CCTGAGGGTGAACGTGA
back to top