CN181522

Overview
NameCN181522
Unique NameCN181522
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length617
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN181522 vs. ExPASy Swiss-Prot
Match: EXPB5_ORYSJ (Expansin-B5 OS=Oryza sativa subsp. japonica GN=EXPB5 PE=2 SV=2)

HSP 1 Score: 93.2041 bits (230), Expect = 1.119e-18
Identity = 60/176 (34.09%), Postives = 85/176 (48.30%), Query Frame = 2
Query:  119 GGPWQSAHATFYGGSDASGTMGGACGYGNLYSQ-GYGVNTAALSTALFNNGLSCGACFEIKCANEPAWCHSGSPSILVTATNFCPPNYALPSDNGGWCNPPRPHFDLAMPMFLKIAE-------YRAGIVPVSYRRVPCRKKGGIRFTINGFR--YFNLVLVTNVAGAGDILRVNV 616
            G  W S  AT+YGG    G+ GGACGY +   Q  +    AA   +LF NG  CG+C++IKC    A   SG P + V  T+ CP         GG C     HFD++   F  +A          AG++ + Y+RVPCR    + F ++     Y+  +LV    G GD+  V++
Sbjct:   42 GYGWSSGGATWYGGPQGDGSEGGACGYQSAVGQRPFSSMIAAGGPSLFKNGKGCGSCYQIKCTGNRAC--SGRP-VTVVITDSCP---------GGVCLNEAAHFDMSGTAFGAMANRGMGDRLRSAGVLKIQYKRVPCRFAMNVAFKVDAGSNPYYLAILVQYANGDGDLAAVHI 205          
BLAST of CN181522 vs. ExPASy Swiss-Prot
Match: EXB11_ORYSJ (Expansin-B11 OS=Oryza sativa subsp. japonica GN=EXPB11 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 8.017e-17
Identity = 68/193 (35.23%), Postives = 93/193 (48.19%), Query Frame = 2
Query:   98 RLPGDYSGGP-------WQSAHATFYGGSDASGTMGGACGYGNLYSQ-GYGVNTAALSTALFNNGLSCGACFEIKCANEPAWCHSGSPSILVTATNFCPPNYALPSDNGGWCNPPRPHFDLAMPMFLKIAE-------YRAGIVPVSYRRVPCRKKG-GIRFTI----NGFRYFNLVLVTNVAGAGDILRVNV 616
            R   +Y+G P       W +A AT+YG  +  G+ GGACGY     Q  +    AA S +L+  G  CGAC+E+KC    A   SG P+ +V  T+ CP         GG C     HFD++      +A+         AGI+ V YRRVPC+  G  I F +    N F YF  VL+    G GD+  V++
Sbjct:   47 RAHNNYTGSPSVTVTTGWAAAGATYYGAPNGDGSDGGACGYQTAVGQRPFSSMIAAGSPSLYKGGKGCGACYEVKCTTNAAC--SGQPATVV-ITDECP---------GGICLAGAAHFDMSGTSMGAMAKPGMADKLRAAGILQVQYRRVPCKYSGVNIAFRVDQGANPF-YFE-VLIEFEDGDGDLNAVDL 225          
BLAST of CN181522 vs. ExPASy Swiss-Prot
Match: EXB15_ORYSJ (Expansin-B15 OS=Oryza sativa subsp. japonica GN=EXPB15 PE=3 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 1.786e-16
Identity = 59/176 (33.52%), Postives = 89/176 (50.57%), Query Frame = 2
Query:  128 WQSAHATFYGGSDASGTMGGACGY-GNLYSQGYGVNTAALSTALFNNGLSCGACFEIKCANEPAWCHSGSPSILVTATNFCPPNYALPSDNGGWCNPPRPHFDLAMPMFLKIAE-------YRAGIVPVSYRRVPCRKKGGIRFTI-----NGFRYFNLVLVTNVAGAGDILRVNV 616
            W +  AT+YG ++ +G+ GGACGY G ++   +    AA S +++ +GL CG+C+++KC    A   SG+P + V  T+ CP         GG C     HFDL+   F  +A          AG++ + Y RVPC   GG++ T      +   YF  VLV    G GD+  V +
Sbjct:   37 WSNGGATWYGAANGAGSDGGACGYQGAVFQAPFSSMIAAGSPSIYKSGLGCGSCYQVKCTGNSAC--SGNP-VTVVLTDECP---------GGPCLSEPVHFDLSGTAFGAMANPGQADQLRAAGVLQIQYNRVPC-NWGGVKLTFVVDVGSNPNYF-AVLVKYENGDGDLSGVEL 198          
BLAST of CN181522 vs. ExPASy Swiss-Prot
Match: EXPB3_ORYSJ (Expansin-B3 OS=Oryza sativa subsp. japonica GN=EXPB3 PE=2 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 1.975e-15
Identity = 59/205 (28.78%), Postives = 99/205 (48.29%), Query Frame = 2
Query:   59 ILSLVCLMWVADARLPGDYSGGP------WQSAHATFYGGSDASGTM--GGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFEIKCANEPAWCHSGSPSILVTATNFCPPNYALPSDNGGWCNPPRPHFDLAMPMFLKIAE-------YRAGIVPVSYRRVPCRKKGGIRFTINGFRYFN----LVLVTNVAGAGDILRVNV 616
            + S + +  VA AR PG++S         W+ A AT+YG    +G    GGACG+ N     +   T+  +  +F +G  CG+C++I+C N PA C     ++++T  N+ P +              + HFDL+   F  +A+         AGI+ + ++RVPC    G++ T +     N     VLV    G GD+++V++
Sbjct:   14 LFSFLVVTCVAGAR-PGNFSASDFTADPNWEVARATWYGAPTGAGPDDDGGACGFKNTNQYPFSSMTSCGNEPIFKDGKGCGSCYQIRCVNHPA-CSGNPETVIITDMNYYPVS--------------KYHFDLSGTAFGAMAKPGQNDQLRHAGIIDIQFKRVPCNFP-GLKVTFHVEEGSNPVYFAVLVEYEDGDGDVVQVDL 201          
BLAST of CN181522 vs. ExPASy Swiss-Prot
Match: EXB18_ORYSJ (Expansin-B18 OS=Oryza sativa subsp. japonica GN=EXPB18 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.579e-15
Identity = 58/171 (33.92%), Postives = 85/171 (49.71%), Query Frame = 2
Query:  128 WQSAHATFYGGSDASGTMGGACGYGNLYSQG-YGVNTAALSTALFNNGLSCGACFEIKCANEPAWCHSGSPSILVTATNFCPPNYALPSDNGGWCNPPRPHFDLAMPMFLKIAE-------YRAGIVPVSYRRVPCRKKGGIRFTI-----NGFRYFNLVLVTNVAGAGDI 601
            W +  AT+YG ++ +G+ GGACGY     Q  +    AA S +++ +GL CG+C+++KC+   A   SG+P + V  T+ CP         GG C     HFDL+   F  +A          AG++ + Y RVPC   GG+  T      +   YF  VLV    G GD+
Sbjct:   37 WSNGGATWYGAANGAGSDGGACGYQAAVDQAPFSSMIAAGSPSIYKSGLGCGSCYQVKCSGNSAC--SGNP-VTVVLTDECP---------GGPCLSEPVHFDLSGTAFGAMANPGQADQLRAAGVLQIQYNRVPC-NWGGVMLTFAVDAGSNPSYF-AVLVKYENGDGDL 193          
BLAST of CN181522 vs. ExPASy Swiss-Prot
Match: EXPB7_ORYSJ (Expansin-B7 OS=Oryza sativa subsp. japonica GN=EXPB7 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 4.399e-15
Identity = 52/178 (29.21%), Postives = 88/178 (49.44%), Query Frame = 2
Query:  119 GGPWQSAHATFYGGSDASGT--MGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFEIKCANEPAWCHSGSPSILVTATNFCPPNYALPSDNGGWCNPPRPHFDLAMPMFLKIAE-------YRAGIVPVSYRRVPCRKKG-GIRFTI--NGFRYFNLVLVTNVAGAGDILRVNV 616
            GG W +A AT+YG  + +G    GGACG+ N+    +   T+  +  LF +G  CG+C++I+C   PA C     ++++T  N+ P +                HFDL+   F  +A+         AGI+ + +RRVPC+  G  + F +       +  +LV    G GD+++V++
Sbjct:   89 GGGWLNARATWYGAPNGAGPDDNGGACGFKNVNLPPFSAMTSCGNEPLFKDGKGCGSCYQIRCVGHPA-CSGLPETVIITDMNYYPVSLY--------------HFDLSGTAFGAMAKDNRNDELRHAGIIDIQFRRVPCQYPGLTVTFHVEQGSNPVYMAILVEYENGDGDVVQVDL 251          
BLAST of CN181522 vs. ExPASy Swiss-Prot
Match: EXB17_ORYSJ (Expansin-B17 OS=Oryza sativa subsp. japonica GN=EXPB17 PE=3 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 7.503e-15
Identity = 57/169 (33.73%), Postives = 84/169 (49.70%), Query Frame = 2
Query:  128 WQSAHATFYGGSDASGTMGGACGYGNLYS-QGYGVNTAALSTALFNNGLSCGACFEIKCANEPAWCHSGSPSILVTATNFCPPNYALPSDNGGWCNPPRPHFDLAMPMFLKIAEYRA-------GIVPVSYRRVPCRKKG-GIRFTIN--GFRYFNLVLVTNVAGAGDI 601
            W+ A AT+YG ++  G+ GGACGYG+L           ++S  LF +G  CGAC+++KC +    C   + +++V  T+ CP         GG C   R HFDL+   F ++A   A       G + V YRR  C+  G  I F +N     ++  +LV    G GDI
Sbjct:   48 WRPATATWYGDAEGDGSTGGACGYGSLVDVVPMKARVGSVSPVLFKDGEGCGACYKVKCLDH-GICSRRAVTVIV--TDECP---------GGLCAFGRTHFDLSGAAFSRMAVAGAGGHLRDRGQLSVVYRRTACKYGGKNIAFRVNEGSTNFWLSLLVEFEDGQGDI 204          
BLAST of CN181522 vs. ExPASy Swiss-Prot
Match: EXB16_ORYSJ (Expansin-B16 OS=Oryza sativa subsp. japonica GN=EXPB16 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 9.800e-15
Identity = 57/169 (33.73%), Postives = 81/169 (47.93%), Query Frame = 2
Query:  128 WQSAHATFYGGSDASGTMGGACGYGNLYS-QGYGVNTAALSTALFNNGLSCGACFEIKCANEPAWCHSGSPSILVTATNFCPPNYALPSDNGGWCNPPRPHFDLAMPMFLKIAE-------YRAGIVPVSYRRVPCRKKG-GIRFTIN--GFRYFNLVLVTNVAGAGDI 601
            W  A AT+YG +D  G+ GGACGYG L           A+S  LF  G  CGAC++++C  + + C   + +++V  T+ CP         GG C   R HFDL+   F ++A           G + V YRR  C+  G  I F +N     ++  +LV    G GDI
Sbjct:   45 WHPATATWYGSADGDGSDGGACGYGTLVDVVPMKTRVGAVSPVLFKGGEGCGACYKVRCL-DASICSRRAVTVIV--TDECP---------GGVCAFGRTHFDLSGAAFARLAVAGHGGQLQNRGEISVVYRRTACKYGGKNIAFHVNEGSTTFWLSLLVEFEDGDGDI 201          
BLAST of CN181522 vs. ExPASy Swiss-Prot
Match: EXPB3_ARATH (Expansin-B3 OS=Arabidopsis thaliana GN=EXPB3 PE=2 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 1.280e-14
Identity = 54/173 (31.21%), Postives = 86/173 (49.71%), Query Frame = 2
Query:  116 SGGPWQSAHATFYGGSDASGTMGGACGYGNLYS-QGYGVNTAALSTALFNNGLSCGACFEIKCANEPAWCHSGSPSILVTATNFCPPNYALPSDNGGWCNPPRPHFDLAMPMFLKIA-------EYRAGIVPVSYRRVPCRKKG-GIRFTIN--GFRYFNLVLVTNVAGAGDI 601
            S   W  A AT+YG  +  G+ GGACGYG L   +       A++  LF NG  CGAC++++C ++ + C   + ++++  T+ CP            C+    HFDL+  +F ++A           G++PV YRR  C+ +G  I F +N     ++  +LV    G GDI
Sbjct:   32 SNSHWLPAVATWYGSPNGDGSDGGACGYGTLVDVKPLHARVGAVNPILFKNGEGCGACYKVRCLDK-SICSRRAVTVII--TDECP-----------GCSKTSTHFDLSGAVFGRLAIAGESGPLRNRGLIPVIYRRTACKYRGKNIAFHVNEGSTDFWLSLLVEFEDGEGDI 190          
BLAST of CN181522 vs. ExPASy Swiss-Prot
Match: EXPB9_ORYSJ (Expansin-B9 OS=Oryza sativa subsp. japonica GN=EXPB9 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.415e-13
Identity = 55/177 (31.07%), Postives = 86/177 (48.59%), Query Frame = 2
Query:  125 PWQSAHATFYGGSDASGTM--GGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFEIKCANEPAWCHSGSPSILVTATNFCPPNYALPSDNGGWCNPPRPHFDLAMPMFLKIA------EYR-AGIVPVSYRRVPCRKKGGIRFTINGFRYFN----LVLVTNVAGAGDILRVNV 616
            PW  A AT+YG    SG+   GGACG  N+    Y    +  +  +F +G  CG+C+E+KC  +PA C     ++ +T  N+ P +                HFD +   F  +A      E R AGI+ + +RRV C+  GG + T +  +  N     VLV  VA  GD++++++
Sbjct:   42 PWLPARATWYGQPYGSGSTDNGGACGIKNVNLPPYNGMISCGNVPIFKDGRGCGSCYEVKC-EQPAACSKQPVTVFITDMNYEPIS--------------AYHFDFSGKAFGAMACPGKETELRKAGIIDMQFRRVRCKYPGGQKVTFHVEKGSNPNYLAVLVKFVADDGDVIQMDL 203          
The following BLAST results are available for this feature:
BLAST of CN181522 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 91
Match NameE-valueIdentityDescription
EXPB5_ORYSJ1.119e-1834.09Expansin-B5 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXB11_ORYSJ8.017e-1735.23Expansin-B11 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXB15_ORYSJ1.786e-1633.52Expansin-B15 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXPB3_ORYSJ1.975e-1528.78Expansin-B3 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXB18_ORYSJ2.579e-1533.92Expansin-B18 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXPB7_ORYSJ4.399e-1529.21Expansin-B7 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXB17_ORYSJ7.503e-1533.73Expansin-B17 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXB16_ORYSJ9.800e-1533.73Expansin-B16 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXPB3_ARATH1.280e-1431.21Expansin-B3 OS=Arabidopsis thaliana GN=EXPB3 PE=2 ... [more]
EXPB9_ORYSJ1.415e-1331.07Expansin-B9 OS=Oryza sativa subsp. japonica GN=EXP... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001B04_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001B04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181522 ID=CN181522; Name=CN181522; organism=Citrus sinensis; type=EST; length=617bp
GAGGTTTGTGAGTGAAGAGAATAAAGAAACGATGGCGGTGGTGAATTGGG
CTGGCGTTATCCTCTCTTTAGTATGCTTAATGTGGGTGGCTGATGCAAGA
CTCCCTGGCGATTACTCCGGTGGCCCATGGCAAAGCGCCCATGCCACCTT
TTACGGCGGCTCTGACGCCTCCGGCACCATGGGAGGAGCGTGCGGTTACG
GTAACTTGTACAGCCAGGGCTACGGCGTGAATACGGCGGCGCTGAGCACG
GCGCTGTTCAACAATGGCTTGAGCTGCGGTGCTTGCTTTGAGATCAAGTG
TGCAAACGAACCCGCGTGGTGTCACTCCGGGAGCCCTTCCATTTTGGTTA
CCGCTACAAACTTTTGCCCGCCCAATTACGCACTCCCAAGTGACAATGGC
GGCTGGTGTAACCCTCCTCGCCCTCATTTTGACCTCGCCATGCCCATGTT
CCTCAAGATTGCTGAGTACCGCGCCGGCATCGTCCCCGTCTCCTACCGCC
GGGTACCATGCCGCAAGAAGGGAGGAATCAGGTTCACAATAAACGGGTTC
CGCTACTTCAACTTGGTTCTGGTCACCAACGTGGCGGGTGCAGGGGATAT
CCTGAGGGTGAACGTGA
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