CN188596

Overview
NameCN188596
Unique NameCN188596
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length612
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188596 vs. ExPASy Swiss-Prot
Match: PROF1_CITSI (Profilin OS=Citrus sinensis PE=1 SV=2)

HSP 1 Score: 213.386 bits (542), Expect = 7.368e-55
Identity = 97/129 (75.19%), Postives = 114/129 (88.37%), Query Frame = -3
Query:  134 WQAYVDDHLLCEIEGNHLSAAAIIGHDGSVWAPSENFPQLKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTSAALIIGIYDDPMTPGQCNMIVERLGDYLIDQGL 520
            WQAYVDDHL+C+I+GN L+AAAI+G DGSVW+ S  FP  + EEI  I+ DF++PGTLAPTGL+LGGTKYMVIQGE GAVIRGKKG GG+ +KKT+ ALIIGIYD+P+TPGQCNMIVERLGDYLI+QGL
Sbjct:    3 WQAYVDDHLMCDIDGNRLTAAAILGQDGSVWSQSATFPAFRLEEIAAILKDFDQPGTLAPTGLFLGGTKYMVIQGEAGAVIRGKKGSGGIIVKKTNQALIIGIYDEPLTPGQCNMIVERLGDYLIEQGL 131          
BLAST of CN188596 vs. ExPASy Swiss-Prot
Match: PROF2_ARATH (Profilin-2 OS=Arabidopsis thaliana GN=PRO2 PE=1 SV=1)

HSP 1 Score: 213.001 bits (541), Expect = 9.623e-55
Identity = 98/129 (75.97%), Postives = 110/129 (85.27%), Query Frame = -3
Query:  134 WQAYVDDHLLCEIEGNHLSAAAIIGHDGSVWAPSENFPQLKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTSAALIIGIYDDPMTPGQCNMIVERLGDYLIDQGL 520
            WQ+YVDDHL+CE+EGNHL+ AAI G DGSVWA S  FPQLKP EI GI  DF E G LAPTGL+LGG KYMV+QGE GAVIRGKKGPGGVTIKKT+ AL+ GIYD+PMT GQCN++VERLGDYLI+ GL
Sbjct:    3 WQSYVDDHLMCEVEGNHLTHAAIFGQDGSVWAQSSAFPQLKPAEIAGINKDFEEAGHLAPTGLFLGGEKYMVVQGEAGAVIRGKKGPGGVTIKKTTQALVFGIYDEPMTGGQCNLVVERLGDYLIESGL 131          
BLAST of CN188596 vs. ExPASy Swiss-Prot
Match: PROF4_ARATH (Profilin-4 OS=Arabidopsis thaliana GN=PRO4 PE=2 SV=1)

HSP 1 Score: 212.616 bits (540), Expect = 1.257e-54
Identity = 95/132 (71.97%), Postives = 116/132 (87.88%), Query Frame = -3
Query:  134 WQAYVDDHLLCEI---EGNHLSAAAIIGHDGSVWAPSENFPQLKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTSAALIIGIYDDPMTPGQCNMIVERLGDYLIDQGL 520
            WQAYVD+HL+C++   +G+HL+AAAIIGHDGSVWA S NFPQ KP+EIT IM DF+EPG LAPTG++L G KYMVIQGEP AVIRGKKG GG+TIKKT  +++ G+Y++P+TPGQCNM+VERLGDYLI+QGL
Sbjct:    3 WQAYVDEHLMCDVGDGQGHHLTAAAIIGHDGSVWAQSANFPQFKPQEITDIMKDFDEPGHLAPTGMFLAGLKYMVIQGEPNAVIRGKKGAGGITIKKTGQSMVFGLYEEPVTPGQCNMVVERLGDYLIEQGL 134          
BLAST of CN188596 vs. ExPASy Swiss-Prot
Match: PROF1_TOBAC (Profilin-1 OS=Nicotiana tabacum GN=PRO1 PE=2 SV=1)

HSP 1 Score: 211.846 bits (538), Expect = 2.144e-54
Identity = 97/131 (74.05%), Postives = 114/131 (87.02%), Query Frame = -3
Query:  137 WQAYVDDHLLCEIEG---NHLSAAAIIGHDGSVWAPSENFPQLKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTSAALIIGIYDDPMTPGQCNMIVERLGDYLIDQG 520
            WQ YVDDHL+ +IEG   +HL+AAAI+GHDGSVWA S  FP+ KPEEIT IM DF+EPG LAPTGL+LGG KYMVIQGEPGAVIRGKKG GG+TIKKT+ ALI GIY++P+TPGQCNM+VE++ DYL+DQG
Sbjct:    3 WQTYVDDHLMADIEGQQGHHLAAAAILGHDGSVWAQSSTFPKFKPEEITNIMKDFDEPGHLAPTGLFLGGAKYMVIQGEPGAVIRGKKGSGGITIKKTNQALIFGIYEEPVTPGQCNMVVEKIRDYLVDQG 133          
BLAST of CN188596 vs. ExPASy Swiss-Prot
Match: PROF_BETVE (Profilin OS=Betula verrucosa GN=BETVII PE=1 SV=1)

HSP 1 Score: 211.075 bits (536), Expect = 3.657e-54
Identity = 97/131 (74.05%), Postives = 114/131 (87.02%), Query Frame = -3
Query:  134 WQAYVDDHLLCEIEG--NHLSAAAIIGHDGSVWAPSENFPQLKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTSAALIIGIYDDPMTPGQCNMIVERLGDYLIDQGL 520
            WQ YVD+HL+C+I+G  ++  A+AI+GHDGSVWA S +FPQ KP+EITGIM DF EPG LAPTGL+LGG KYMVIQGE GAVIRGKKG GG+TIKKT  AL+ GIY++P+TPGQCNM+VERLGDYLIDQGL
Sbjct:    3 WQTYVDEHLMCDIDGQASNSLASAIVGHDGSVWAQSSSFPQFKPQEITGIMKDFEEPGHLAPTGLHLGGIKYMVIQGEAGAVIRGKKGSGGITIKKTGQALVFGIYEEPVTPGQCNMVVERLGDYLIDQGL 133          
BLAST of CN188596 vs. ExPASy Swiss-Prot
Match: PROF3_TOBAC (Profilin-3 OS=Nicotiana tabacum GN=PRO3 PE=2 SV=1)

HSP 1 Score: 209.534 bits (532), Expect = 1.064e-53
Identity = 95/130 (73.08%), Postives = 113/130 (86.92%), Query Frame = -3
Query:  137 WQAYVDDHLLCEIEGN--HLSAAAIIGHDGSVWAPSENFPQLKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTSAALIIGIYDDPMTPGQCNMIVERLGDYLIDQG 520
            WQ YVDDHL+ + EG   HL+AAAI+GHDGSVWA S +FP+ KPEEIT IM DF+EPG LAPTGL+L G KYMVIQGEPGAVIRGKKG GG+TIKKT+ ALI G+Y++P+TPGQCNM+VE++GDYL+DQG
Sbjct:    3 WQTYVDDHLMVDFEGQGQHLAAAAILGHDGSVWAQSPHFPKFKPEEITNIMKDFDEPGFLAPTGLFLAGIKYMVIQGEPGAVIRGKKGSGGITIKKTNQALIFGLYEEPVTPGQCNMVVEKIGDYLVDQG 132          
BLAST of CN188596 vs. ExPASy Swiss-Prot
Match: PROF3_AMBAR (Profilin-3 OS=Ambrosia artemisiifolia GN=D03 PE=1 SV=1)

HSP 1 Score: 206.838 bits (525), Expect = 6.896e-53
Identity = 91/131 (69.47%), Postives = 115/131 (87.79%), Query Frame = -3
Query:  134 WQAYVDDHLLCEIEG--NHLSAAAIIGHDGSVWAPSENFPQLKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTSAALIIGIYDDPMTPGQCNMIVERLGDYLIDQGL 520
            WQAYVD+HL+C+IEG  +HL++AAI+GHDG+VWA S NFPQ KPEE+ GI+ +F++ GTLAPTG+++ G KYMV+QGE GAVIRGKKG GG+ IKKT  AL++GIYD+P+ PGQCNM+VERLGDYLIDQG+
Sbjct:    3 WQAYVDEHLMCDIEGTGHHLTSAAILGHDGTVWAQSSNFPQFKPEEMKGIITEFDQAGTLAPTGMFIAGAKYMVLQGEQGAVIRGKKGAGGICIKKTGQALVMGIYDEPVAPGQCNMVVERLGDYLIDQGM 133          
BLAST of CN188596 vs. ExPASy Swiss-Prot
Match: PROF2_ARTVU (Profilin-2 OS=Artemisia vulgaris PE=1 SV=3)

HSP 1 Score: 206.453 bits (524), Expect = 9.007e-53
Identity = 93/131 (70.99%), Postives = 113/131 (86.26%), Query Frame = -3
Query:  134 WQAYVDDHLLCEIEGN--HLSAAAIIGHDGSVWAPSENFPQLKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTSAALIIGIYDDPMTPGQCNMIVERLGDYLIDQGL 520
            WQ YVDDHL+C+IEG   HL+AAAI+G DG+VWA S+ FP+ KPEE+ GI+N+FNE GTLAPTGL+LGG KYMV+QGE GAVIRGKKG GG+ IKKT  A+++GIYD+P+ PGQCNMIVERLGDYL+DQ +
Sbjct:    3 WQTYVDDHLMCDIEGTGQHLTAAAILGLDGTVWAKSDKFPEFKPEEMKGIINEFNEVGTLAPTGLFLGGAKYMVLQGEAGAVIRGKKGAGGICIKKTGQAMVMGIYDEPVAPGQCNMIVERLGDYLVDQNM 133          
BLAST of CN188596 vs. ExPASy Swiss-Prot
Match: PROF3_ARATH (Profilin-3 OS=Arabidopsis thaliana GN=PRO3 PE=2 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 1.536e-52
Identity = 91/132 (68.94%), Postives = 113/132 (85.61%), Query Frame = -3
Query:  134 WQAYVDDHLLCEI---EGNHLSAAAIIGHDGSVWAPSENFPQLKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTSAALIIGIYDDPMTPGQCNMIVERLGDYLIDQGL 520
            WQ YVD+HL+C++   +G+HL+AAAI+GHDGSVWA S NFPQ K +E + IM DF+EPG LAPTGL++ G KYMVIQGEPGAVIRGKKG GG+TIKKT  + + GIY++P+TPGQCNM+VERLGDYL++QGL
Sbjct:    3 WQTYVDEHLMCDVGDGQGHHLTAAAIVGHDGSVWAQSANFPQFKGQEFSDIMKDFDEPGHLAPTGLFMAGAKYMVIQGEPGAVIRGKKGAGGITIKKTGQSCVFGIYEEPVTPGQCNMVVERLGDYLLEQGL 134          
BLAST of CN188596 vs. ExPASy Swiss-Prot
Match: PROF_BRANA (Profilin OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 203.371 bits (516), Expect = 7.624e-52
Identity = 92/132 (69.70%), Postives = 110/132 (83.33%), Query Frame = -3
Query:  134 WQAYVDDHLLCEI---EGNHLSAAAIIGHDGSVWAPSENFPQLKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTSAALIIGIYDDPMTPGQCNMIVERLGDYLIDQGL 520
            WQ YVD+HL+C++   +G+HL+AAAI GHDGSVWA S NFPQ K +E   IM DF+EPG LAPTGL+L G KYMVIQGEPGAVIRGKKG GG+TIKKT  + + GIY++P+TPGQCNM+VERLGDYLI+Q L
Sbjct:    3 WQTYVDEHLMCDVGDGQGHHLAAAAIFGHDGSVWAQSANFPQFKGQEFANIMKDFDEPGHLAPTGLFLAGAKYMVIQGEPGAVIRGKKGAGGITIKKTGQSCVFGIYEEPVTPGQCNMVVERLGDYLIEQDL 134          
The following BLAST results are available for this feature:
BLAST of CN188596 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 88
Match NameE-valueIdentityDescription
PROF1_CITSI7.368e-5575.19Profilin OS=Citrus sinensis PE=1 SV=2[more]
PROF2_ARATH9.623e-5575.97Profilin-2 OS=Arabidopsis thaliana GN=PRO2 PE=1 SV... [more]
PROF4_ARATH1.257e-5471.97Profilin-4 OS=Arabidopsis thaliana GN=PRO4 PE=2 SV... [more]
PROF1_TOBAC2.144e-5474.05Profilin-1 OS=Nicotiana tabacum GN=PRO1 PE=2 SV=1[more]
PROF_BETVE3.657e-5474.05Profilin OS=Betula verrucosa GN=BETVII PE=1 SV=1[more]
PROF3_TOBAC1.064e-5373.08Profilin-3 OS=Nicotiana tabacum GN=PRO3 PE=2 SV=1[more]
PROF3_AMBAR6.896e-5369.47Profilin-3 OS=Ambrosia artemisiifolia GN=D03 PE=1 ... [more]
PROF2_ARTVU9.007e-5370.99Profilin-2 OS=Artemisia vulgaris PE=1 SV=3[more]
PROF3_ARATH1.536e-5268.94Profilin-3 OS=Arabidopsis thaliana GN=PRO3 PE=2 SV... [more]
PROF_BRANA7.624e-5269.70Profilin OS=Brassica napus PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006G07_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006G07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188596 ID=CN188596; Name=CN188596; organism=Citrus sinensis; type=EST; length=612bp
TTTTTTTTTTTTCCTTTCCCACACAGTTCCCATAACTTTGAATACTGTAA
CCTTTTAAGGCCGCAAGTTAACAGTGCGAGCTTTTTAGGGACCCTAAGAA
ATGAAACAAATTAGCGGACATGCAAACCACCTAAAGACCCTGATCAATGA
GATAATCACCAAGCCTTTCAACAATCATGTTGCACTGCCCAGGGGTCATC
GGGTCGTCATAGATTCCAATGATTAAGGCCGCACTGGTCTTCTTGATGGT
AACACCACCAGGGCCCTTCTTCCCTCGGATGACAGCACCTGGCTCACCCT
GGATCACCATATATTTTGTGCCACCAAGATACAGTCCAGTTGGTGCTAGT
GTTCCAGGTTCATTAAAGTCATTCATGATACCAGTTATTTCCTCAGGTTT
TAACTGAGGGAAGTTTTCACTCGGGGCCCAAACGCTGCCGTCGTGGCCGA
TGATAGCGGCAGCTGAAAGATGGTTACCCTCAATTTCACACAACAGATGA
TCATCGACGTAAGCTTGCCACGACATCTTTTTCTGCTTTGATGATTCCTC
TGATTTCTCTGTGAATTTTTTTTTTTCCTGAAGCCTTTTTACAAATGAGT
GTGTTTAAGCCT
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