CN188596

Overview
NameCN188596
Unique NameCN188596
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length612
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188596 vs. ExPASy Swiss-Prot
Match: PROF_HELAN (Profilin OS=Helianthus annuus PE=1 SV=1)

HSP 1 Score: 201.06 bits (510), Expect = 3.784e-51
Identity = 89/131 (67.94%), Postives = 113/131 (86.26%), Query Frame = -3
Query:  134 WQAYVDDHLLCEIEGN--HLSAAAIIGHDGSVWAPSENFPQLKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTSAALIIGIYDDPMTPGQCNMIVERLGDYLIDQGL 520
            WQAYVD+HL+C+IEG   HL++AAI+G DG+VWA S  FPQ KPEE+ GI+ +F+E GTLAPTG+++ G KYMV+QGEPGAVIRGKKG GG+ IKKT  A+I+GIYD+P+ PGQCNM+VERLGDYL++QG+
Sbjct:    3 WQAYVDEHLMCDIEGTGQHLTSAAILGLDGTVWAQSAKFPQFKPEEMKGIIKEFDEAGTLAPTGMFIAGAKYMVLQGEPGAVIRGKKGAGGICIKKTGQAMIMGIYDEPVAPGQCNMVVERLGDYLLEQGM 133          
BLAST of CN188596 vs. ExPASy Swiss-Prot
Match: PROF1_ARTVU (Profilin-1 OS=Artemisia vulgaris PE=1 SV=3)

HSP 1 Score: 198.749 bits (504), Expect = 1.878e-50
Identity = 90/131 (68.70%), Postives = 108/131 (82.44%), Query Frame = -3
Query:  134 WQAYVDDHLLCEIEGN--HLSAAAIIGHDGSVWAPSENFPQLKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTSAALIIGIYDDPMTPGQCNMIVERLGDYLIDQGL 520
            WQ YVDDHL+C+IEG   HL++AAI G DG+VWA S +FP+ KP EI  I+ +FNE G LAPTGL+LGG KYMVIQGE GAVIRGKKG GG+ IKKT  A++ GIYD+P+ PGQCNM+VERLGDYL+DQG+
Sbjct:    3 WQTYVDDHLMCDIEGTGQHLTSAAIFGTDGTVWAKSASFPEFKPNEIDAIIKEFNEAGQLAPTGLFLGGAKYMVIQGEAGAVIRGKKGAGGICIKKTGQAMVFGIYDEPVAPGQCNMVVERLGDYLLDQGM 133          
BLAST of CN188596 vs. ExPASy Swiss-Prot
Match: PROF1_PHYPO (Profilin-A OS=Physarum polycephalum GN=PROA PE=3 SV=2)

HSP 1 Score: 103.219 bits (256), Expect = 1.074e-21
Identity = 55/128 (42.97%), Postives = 81/128 (63.28%), Query Frame = -3
Query:  137 WQAYVDDHLLCEIEGNHLSAAAIIGHDGSVWAPSENFPQLKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTSAALIIGIYDDPMTPGQCNMIVERLGDYLIDQG 520
            WQAYVDD L   +   H+  AAIIGHDG+VWA S+N   LK  E   I+N F +  ++   G+++ G KY+ I+ +  ++  GKKG GGV + KT  +++IG Y++ + PGQ   +VE+L DYL + G
Sbjct:    3 WQAYVDDQL---VGTGHVIGAAIIGHDGNVWA-SKNL-SLKAGEGAKIVNGFKDSASVLSGGIFVDGQKYLTIKADDKSIY-GKKGAGGVVLVKTGQSVLIGHYNETIQPGQATTVVEKLADYLRENG 124          
BLAST of CN188596 vs. ExPASy Swiss-Prot
Match: PROF_BRABE (Profilin OS=Branchiostoma belcheri PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 1.832e-21
Identity = 53/129 (41.09%), Postives = 79/129 (61.24%), Query Frame = -3
Query:  134 WQAYVDDHLLCEIEGNHLSAAAIIGHDGSVWAPSENFPQLKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTSAALIIGIYDDPMTPGQCNMIVERLGDYLIDQGL 520
            WQ YVD HL+       ++ AAI G DGS+WA S    +L  +E+  +   F++   LA  G+ +GGTKY+ + G+   +IRGKK   GV I KT  A+++ +Y +P+ P QC ++VE+LGD+LI   L
Sbjct:    3 WQQYVDQHLVAT---QCVTMAAICGLDGSIWAKSNGL-ELSQDEVATLARSFSKDEVLAANGIRIGGTKYIYLSGDD-KLIRGKKDRQGVHIVKTKTAMVMALYAEPILPEQCAVVVEKLGDWLIQNDL 126          
BLAST of CN188596 vs. ExPASy Swiss-Prot
Match: PROF1_DICDI (Profilin-1 OS=Dictyostelium discoideum GN=proA PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 1.832e-21
Identity = 59/129 (45.74%), Postives = 75/129 (58.14%), Query Frame = -3
Query:  137 WQAYVDDHLLCEIEGNHLSAAAIIG-HDGSVWAPSENFPQLKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTSAALIIGIYDDPMTPGQCNMIVERLGDYLIDQG 520
            WQ YVD+ L     G  LS  AI+G +DG VWA S      KPE   GI   F  P  +   G  +GG KYM I+G+P ++  GKKG  G  + +T  A+I+GIYDD + PG   +IVE+LGDYL D G
Sbjct:    3 WQQYVDEQLT----GAGLSQGAILGANDGGVWAKSSGINITKPEG-DGIAALFKNPAEVFAKGALIGGVKYMGIKGDPQSIY-GKKGATGCVLVRTGQAIIVGIYDDKVQPGSAALIVEKLGDYLRDNG 125          
BLAST of CN188596 vs. ExPASy Swiss-Prot
Match: PROF_DROME (Profilin OS=Drosophila melanogaster GN=chic PE=1 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.005e-19
Identity = 52/128 (40.62%), Postives = 76/128 (59.38%), Query Frame = -3
Query:  137 WQAYVDDHLLCEIEGNHLSAAAIIGHDGSVWAPSENFPQLKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTSAALIIGIYDDPMTPGQCNMIVERLGDYLIDQG 520
            WQ YVD+ LL       ++ A I GHDG++WA S  F   K EE++ +++ F++   L   G+ L G +Y+ + G    V+R K G  GV   KT+ A+I+ IY+DP+ P Q   +VE+LGDYLI  G
Sbjct:    3 WQDYVDNQLLAS---QCVTKACIAGHDGNIWAQSSGFEVTK-EELSKLISGFDQQDGLTSNGVTLAGQRYIYLSGTD-RVVRAKLGRSGVHCMKTTQAVIVSIYEDPVQPQQAASVVEKLGDYLITCG 125          
BLAST of CN188596 vs. ExPASy Swiss-Prot
Match: PROF2_ACACA (Profilin-2 OS=Acanthamoeba castellanii PE=1 SV=3)

HSP 1 Score: 96.6709 bits (239), Expect = 1.005e-19
Identity = 52/128 (40.62%), Postives = 74/128 (57.81%), Query Frame = -3
Query:  137 WQAYVDDHLLCEIEGNHLSAAAIIGHDGSVWAPSENFPQLKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTSAALIIGIYDDPMTPGQCNMIVERLGDYLIDQG 520
            WQ YVD +L   +    ++ AAIIGHDG+ WA S  F  + P     + N F +   +   G  L GT+Y+ I+ +  +V  GKKG  GV   KTS A++IG+Y++ + PG    +VE+L DYLI QG
Sbjct:    3 WQTYVDTNL---VGTGAVTQAAIIGHDGNTWATSAGFA-VSPANGAALANAFKDATAIRSNGFELAGTRYVTIRADDRSVY-GKKGSAGVITVKTSKAILIGVYNEKIQPGTAANVVEKLADYLIGQG 125          
BLAST of CN188596 vs. ExPASy Swiss-Prot
Match: PROF_APIME (Profilin OS=Apis mellifera PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.313e-19
Identity = 52/127 (40.94%), Postives = 76/127 (59.84%), Query Frame = -3
Query:  137 QAYVDDHLLCEIEGNHLSAAAIIGHDGSVWAPSENFPQLKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTSAALIIGIYDDPMTPGQCNMIVERLGDYLIDQG 517
            Q YVD  LL       ++ AAI GHDG++WA SE F ++  EE+T ++  F E   L  +G+ L G +Y+ + G    VIR K G  GV   KT+ A+++ +Y+DP+ P Q   +VE+LGDYL+  G
Sbjct:    4 QDYVDKQLLAS---RCVTKAAIAGHDGNLWAKSEGF-EVSKEELTKLVQGFEEQDILTSSGVTLAGNRYIYLSGTD-RVIRAKLGKVGVHCMKTTQAVVVSLYEDPIQPQQAASVVEKLGDYLVSCG 125          
BLAST of CN188596 vs. ExPASy Swiss-Prot
Match: PROF_BOMMO (Profilin OS=Bombyx mori PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.111e-18
Identity = 50/128 (39.06%), Postives = 74/128 (57.81%), Query Frame = -3
Query:  137 WQAYVDDHLLCEIEGNHLSAAAIIGHDGSVWAPSENFPQLKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTSAALIIGIYDDPMTPGQCNMIVERLGDYLIDQG 520
            WQ YVD  L+       ++ AAI GHDG+VWA SE F ++  +E+  I+  F     L   G+ + GT+Y+ + G    +IR K G  GV   KT  A++I +Y++P+ P Q   +VE+LG+YLI  G
Sbjct:    3 WQDYVDKQLMAS---RCVTKAAIAGHDGNVWAKSEGF-EISKDEVAKIVAGFENESLLTSGGVTIAGTRYIYLSGTDH-IIRAKLGKVGVHCMKTQQAVVISLYEEPIQPQQAASVVEKLGEYLITCG 125          
BLAST of CN188596 vs. ExPASy Swiss-Prot
Match: PROF2_DICDI (Profilin-2 OS=Dictyostelium discoideum GN=proB PE=1 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.476e-18
Identity = 53/127 (41.73%), Postives = 74/127 (58.27%), Query Frame = -3
Query:  143 WQAYVDDHLLCEIEGNHLSAAAIIGH-DGSVWAPSENFPQLKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTSAALIIGIYDDPMTPGQCNMIVERLGDYLID 520
            WQAYVD++LL    G   ++AA++G  DGSVWA S  F   + + IT +   F + G    TG+++ G KYM I+ +  +   GK G GGV   KT   +I+ +YDD + PG    I E+L DYLID
Sbjct:    3 WQAYVDNNLL----GAGFASAALLGAADGSVWAHSAGFNVAEGKAITAL---FQKDGAAFATGIHVAGKKYMAIKSDTRSAY-GKLGAGGVVCVKTLTCIIVAVYDDKLQPGAAANIAEKLADYLID 121          
The following BLAST results are available for this feature:
BLAST of CN188596 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 88
Match NameE-valueIdentityDescription
PROF_HELAN3.784e-5167.94Profilin OS=Helianthus annuus PE=1 SV=1[more]
PROF1_ARTVU1.878e-5068.70Profilin-1 OS=Artemisia vulgaris PE=1 SV=3[more]
PROF1_PHYPO1.074e-2142.97Profilin-A OS=Physarum polycephalum GN=PROA PE=3 S... [more]
PROF_BRABE1.832e-2141.09Profilin OS=Branchiostoma belcheri PE=2 SV=1[more]
PROF1_DICDI1.832e-2145.74Profilin-1 OS=Dictyostelium discoideum GN=proA PE=... [more]
PROF_DROME1.005e-1940.63Profilin OS=Drosophila melanogaster GN=chic PE=1 S... [more]
PROF2_ACACA1.005e-1940.63Profilin-2 OS=Acanthamoeba castellanii PE=1 SV=3[more]
PROF_APIME1.313e-1940.94Profilin OS=Apis mellifera PE=2 SV=1[more]
PROF_BOMMO1.111e-1839.06Profilin OS=Bombyx mori PE=2 SV=1[more]
PROF2_DICDI2.476e-1841.73Profilin-2 OS=Dictyostelium discoideum GN=proB PE=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006G07_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006G07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188596 ID=CN188596; Name=CN188596; organism=Citrus sinensis; type=EST; length=612bp
TTTTTTTTTTTTCCTTTCCCACACAGTTCCCATAACTTTGAATACTGTAA
CCTTTTAAGGCCGCAAGTTAACAGTGCGAGCTTTTTAGGGACCCTAAGAA
ATGAAACAAATTAGCGGACATGCAAACCACCTAAAGACCCTGATCAATGA
GATAATCACCAAGCCTTTCAACAATCATGTTGCACTGCCCAGGGGTCATC
GGGTCGTCATAGATTCCAATGATTAAGGCCGCACTGGTCTTCTTGATGGT
AACACCACCAGGGCCCTTCTTCCCTCGGATGACAGCACCTGGCTCACCCT
GGATCACCATATATTTTGTGCCACCAAGATACAGTCCAGTTGGTGCTAGT
GTTCCAGGTTCATTAAAGTCATTCATGATACCAGTTATTTCCTCAGGTTT
TAACTGAGGGAAGTTTTCACTCGGGGCCCAAACGCTGCCGTCGTGGCCGA
TGATAGCGGCAGCTGAAAGATGGTTACCCTCAATTTCACACAACAGATGA
TCATCGACGTAAGCTTGCCACGACATCTTTTTCTGCTTTGATGATTCCTC
TGATTTCTCTGTGAATTTTTTTTTTTCCTGAAGCCTTTTTACAAATGAGT
GTGTTTAAGCCT
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