CN181498

Overview
NameCN181498
Unique NameCN181498
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length680
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN181498 vs. ExPASy Swiss-Prot
Match: LADH_METMP (Lactaldehyde dehydrogenase OS=Methanococcus maripaludis GN=MMP1487 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.227e-11
Identity = 46/185 (24.86%), Postives = 90/185 (48.65%), Query Frame = 2
Query:  107 LFINGEFVDSVSGKTFETIDPRTGEAIARIAEGDKEDVDLAVKAARQAFDHGPWPRFSGAERRGIMLKFADXXXXXXXXXXXXXXXXXGKLHSWAKMGDIPGAANTLRYYAGAADKIHGEVLKMSRALQGYTLREPIGVVGHIIPWNFPTTMFFMKVSPALAAGCTMIVKPAEXTPLIALYFAHL 661
            +FI+G+++     +  +  DP T E I +I   D+E+   A++   +  +       S ++R  I++K A+                 GK    +K+ ++      L+  A  A ++ GE +     L  +T +EP+GV+G I P+NFP  +   K+ PA+A G ++++ P+   P++A+Y   +
Sbjct:    1 MFIDGKWIIR---EDIDVFDPYTLENIEKITALDREETKNAIEVTEKHKEI--MKNLSPSKRYKILMKVAEHLSSKKDFFAKTISIDVGKPIKQSKI-EVDRTLTALKLSAFYAKELRGETINSENGLI-FTKKEPLGVIGAITPFNFPLNLATHKIGPAIATGNSVVLHPSSKAPIVAIYLTKI 178          
BLAST of CN181498 vs. ExPASy Swiss-Prot
Match: ROCA_STAS1 (1-pyrroline-5-carboxylate dehydrogenase OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=rocA PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.603e-11
Identity = 55/193 (28.50%), Postives = 91/193 (47.15%), Query Frame = 2
Query:  107 LFINGEFVDSVSGKTFETIDP-RTGEAIARIAEGDKEDVDLAVKAARQAFDHGPWPRFSGAERRGIMLKFADXXXXXXXXXXXXXXXXXGKLHSWAKMGDIPGAANTLRYYAGAADKI-HGEVLKMSRALQGYTLREPIGVVGHIIPWNFPTTMFFMKVSPALAAGCTMIVKPAEXTPLIALYFAHLAKLAGV 679
            L INGE  +  +  T+++I+P  T E IA +++  ++DVD A +AA +A+    W R+S  +R   +++ A                  GK    A +GD     + + YYA +  ++  G+ +            +PIG    I PWNFP  +        + AG T+++KPAE TPL A     + + AG+
Sbjct:   39 LVINGE--EKFTKDTYQSINPANTTEVIAEVSKATQKDVDDAFEAANEAYKS--WKRWSHKDRAEFLIRVAAIIRRRKEEISAVMVYEAGKPWDEA-VGDAAEGIDFIEYYARSMMELADGKPVLDREGEHNKYFYKPIGTGVTIPPWNFPFAIMAGTTLAPVVAGNTVLLKPAEDTPLTAYKLMEILEEAGL 226          
BLAST of CN181498 vs. ExPASy Swiss-Prot
Match: LADH_METVS (Lactaldehyde dehydrogenase OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=Mevan_0796 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.093e-11
Identity = 45/181 (24.86%), Postives = 88/181 (48.62%), Query Frame = 2
Query:  107 LFINGEFVDSVSGKTFETIDPRTGEAIARIAEGDKEDVDLAVKAARQAFDHGPWPRFSGAERRGIMLKFADXXXXXXXXXXXXXXXXXGKLHSWAKMGDIPGAANTLRYYAGAADKIHGEVLKMSRALQGYTLREPIGVVGHIIPWNFPTTMFFMKVSPALAAGCTMIVKPAEXTPLIALY 649
            +FI+G+++     +  + ++P T E I RI   D+E+   A++ A +  D       + ++R  +++K A+                 GK    +++ ++       R  A  A ++ GE +     +  +T +EP+GVVG I P+NFP  +   K+ PA+A G  +++ P+   P+ A+Y
Sbjct:    1 MFIDGKWI---LREDLDILNPYTLEIIERITALDREETKYAIEVATENKD--VMKELNPSKRYSLLMKIAEHISSKKDLFANTISVDVGKPIKQSRI-EVDRTITAFRLSALYAKELRGETIPSENEII-FTKKEPVGVVGAITPFNFPLNLITHKIGPAIATGNAVVLHPSSKAPITAIY 174          
BLAST of CN181498 vs. ExPASy Swiss-Prot
Match: LADH_METM7 (Lactaldehyde dehydrogenase OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=MmarC7_0731 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.734e-11
Identity = 47/185 (25.41%), Postives = 87/185 (47.03%), Query Frame = 2
Query:  107 LFINGEFVDSVSGKTFETIDPRTGEAIARIAEGDKEDVDLAVKAARQAFDHGPWPRFSGAERRGIMLKFADXXXXXXXXXXXXXXXXXGKLHSWAKMGDIPGAANTLRYYAGAADKIHGEVLKMSRALQGYTLREPIGVVGHIIPWNFPTTMFFMKVSPALAAGCTMIVKPAEXTPLIALYFAHL 661
            +FI+G+++        +  DP T + I +I   D+E+   A++   +  +       S ++R  I++K A+                 GK    +K+ ++       R  A  A ++ GE +     L  +T +EP+GVVG I P+NFP  +   K+ PA+A G ++I+ P+   P+ A+Y   +
Sbjct:    1 MFIDGKWIIR---DDIDVFDPYTLKNIEKITALDREETKNAIEITEK--NKEVMKNLSPSKRYSILMKIAEQISLKKDLFAKTISIDVGKPIKQSKI-EVDRTLTAFRLSAFYAKELRGETINSENGLI-FTKKEPLGVVGAITPFNFPLNLITHKIGPAIATGNSVILHPSSKAPIAAIYLTKI 178          
BLAST of CN181498 vs. ExPASy Swiss-Prot
Match: GABD2_MYCUA (Putative succinate-semialdehyde dehydrogenase [NADP+] 2 OS=Mycobacterium ulcerans (strain Agy99) GN=gabD2 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.663e-11
Identity = 56/195 (28.72%), Postives = 82/195 (42.05%), Query Frame = 2
Query:  128 VDSVSGKTFETIDPR-TGEAIARIAEGDKEDVDLAVKAARQAFDHGPWPRFSGAERRGIMLKFADXXXXXXXXXXXXXXXXXGKLHSWAKMGDIPGAANTLRYYAGAADKIHGEVLK----------MSRALQGYTLREPIGVVGHIIPWNFPTTMFFMKVSPALAAGCTMIVKPAEXTPLIALYFAHLAKLAGV 679
            +  V  +   TID   TG+ +  I  G  EDV+ A   AR+A     W +   +ER  ++ ++ D                 GK   WA   ++        YYA    ++   +LK          + +   GY   +P GVVG I PWN+P T+      PAL AG  +++KP   TP  AL  A L   AG+
Sbjct:   18 IKDVDARPTRTIDEVFTGKPLTTIPVGTAEDVEAAFAEAREA--QANWAKRPVSERAEVIRRYRDLVIENREFLMDLLQAEAGKAR-WAAQEEVVDLVANANYYA----RVSAGLLKPRTVQALLPGIGKTTVGY---QPKGVVGVISPWNYPMTLTASDSVPALIAGNAVVLKPDSQTPYCALACAELLYRAGL 202          
The following BLAST results are available for this feature:
BLAST of CN181498 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 355
Match NameE-valueIdentityDescription
LADH_METMP1.227e-1124.86Lactaldehyde dehydrogenase OS=Methanococcus maripa... [more]
ROCA_STAS11.603e-1128.501-pyrroline-5-carboxylate dehydrogenase OS=Staphyl... [more]
LADH_METVS2.093e-1124.86Lactaldehyde dehydrogenase OS=Methanococcus vannie... [more]
LADH_METM72.734e-1125.41Lactaldehyde dehydrogenase OS=Methanococcus maripa... [more]
GABD2_MYCUA4.663e-1128.72Putative succinate-semialdehyde dehydrogenase [NAD... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001A15_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001A15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181498 ID=CN181498; Name=CN181498; organism=Citrus sinensis; type=EST; length=680bp
GAGGTAATACCACAAAGATAGAGAAAGATAGAGAGAGATGGAGGGCAGTC
TTAGCAATGGAAGCTGCAAGTCTTTATTCAAGATGCCGGAGATCAAGTTC
ACGAAGCTGTTCATTAACGGAGAATTTGTTGATTCTGTTTCAGGGAAAAC
GTTTGAAACAATTGATCCAAGGACAGGAGAAGCAATAGCAAGAATTGCTG
AAGGAGACAAGGAGGATGTTGATCTTGCCGTCAAGGCAGCACGTCAGGCG
TTTGATCACGGTCCATGGCCACGTTTTTCTGGAGCCGAAAGGAGAGGGAT
AATGTTGAAGTTTGCGGACTTAATTGAAGAACACGCAGAGGTATTAGCGG
TGCTGGAAGCTCTTGATGCTGGCAAATTGCACAGTTGGGCCAAAATGGGC
GACATTCCAGGAGCTGCTAATACCCTTCGTTACTATGCTGGTGCAGCTGA
TAAAATACACGGAGAGGTTCTAAAAATGTCTCGGGCGTTACAGGGCTACA
CGTTGCGTGAGCCAATTGGCGTTGTTGGACACATCATTCCCTGGAATTTT
CCTACCACCATGTTTTTCATGAAGGTTAGCCCTGCGTTAGCCGCTGGGTG
CACAATGATTGTCAAGCCTGCTGAGCNAACTCCCCTTATTGCTCTTTATT
TTGCCCATCTTGCCAAGCTGGCTGGAGTAC
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