CN181497

Overview
NameCN181497
Unique NameCN181497
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length317
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN181497 vs. ExPASy Swiss-Prot
Match: AL9A1_ORYLA (Aldehyde dehydrogenase family 9 member A1 OS=Oryzias latipes GN=aldh9A1 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 5.280e-17
Identity = 41/94 (43.62%), Postives = 64/94 (68.09%), Query Frame = -3
Query:   31 KNEIFGPVMALMKFFFAEKTIKSANNKKNGLAAGIMTKDLNVANTVSRSIRKKIIWINCYFAFDSDCPYGGYKMSGFGRDCGKKSLHHYLQVKS 312
            K EIFGPVM+++ F   E+ I+ ANN   GLA+G+ T+D++ A+ V+ S+     +IN Y     + P+GGYKMSGFGR+ G+ ++ +Y Q+K+
Sbjct:  400 KEEIFGPVMSVLPFDTEEEVIRRANNTTFGLASGVFTRDISRAHRVAASLEAGTCFINNYNISPVEVPFGGYKMSGFGRENGQVTIEYYSQLKT 493          
BLAST of CN181497 vs. ExPASy Swiss-Prot
Match: BETB_PECCP (Betaine aldehyde dehydrogenase OS=Pectobacterium carotovorum subsp. carotovorum (strain PC1) GN=betB PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 6.896e-17
Identity = 41/94 (43.62%), Postives = 61/94 (64.89%), Query Frame = -3
Query:   31 KNEIFGPVMALMKFFFAEKTIKSANNKKNGLAAGIMTKDLNVANTVSRSIRKKIIWINCYFAFDSDCPYGGYKMSGFGRDCGKKSLHHYLQVKS 312
            + EIFGPVM+++ +   ++ I+ AN+ + GLAAG++T DLN A+ V   +   I WIN +    ++ P GGYK SG GR+ G  +L HY Q+KS
Sbjct:  385 REEIFGPVMSILTYQNEDEVIRRANDSEYGLAAGVVTGDLNRAHRVIHQLEAGICWINTWGESPAEMPVGGYKHSGVGRENGITTLEHYTQIKS 478          
BLAST of CN181497 vs. ExPASy Swiss-Prot
Match: BETB_ECOSM (Betaine aldehyde dehydrogenase OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=betB PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 6.896e-17
Identity = 43/94 (45.74%), Postives = 60/94 (63.83%), Query Frame = -3
Query:   31 KNEIFGPVMALMKFFFAEKTIKSANNKKNGLAAGIMTKDLNVANTVSRSIRKKIIWINCYFAFDSDCPYGGYKMSGFGRDCGKKSLHHYLQVKS 312
            + EIFGPVM+L+ +   ++ I+ AN+   GLAAGI+T DLN+A+ V   +   I WIN +    ++ P GGYK SG GR+ G  +L  Y QVKS
Sbjct:  385 REEIFGPVMSLLTYESEDEVIRRANDTDYGLAAGIVTADLNLAHRVIHQLEAGICWINTWGESPAEMPVGGYKHSGIGRENGVMTLQSYTQVKS 478          
BLAST of CN181497 vs. ExPASy Swiss-Prot
Match: ALDH_ENCBU (Aldehyde dehydrogenase OS=Enchytraeus buchholzi GN=ALDH PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 6.896e-17
Identity = 41/95 (43.16%), Postives = 59/95 (62.11%), Query Frame = -3
Query:   31 AKNEIFGPVMALMKFFFAEKTIKSANNKKNGLAAGIMTKDLNVANTVSRSIRKKIIWINCYFAFDSDCPYGGYKMSGFGRDCGKKSLHHYLQVKS 315
            AK EIFGPV  + KF   ++ I+ AN+   GLAA + TK+++ A  V+ S+    +W+N Y  F    P+GGYKMSG GR+ G   L  +L+VK+
Sbjct:  394 AKEEIFGPVQLIFKFKDVDEVIERANDTSYGLAAAVFTKNIDTALKVANSLEAGTVWVNTYNHFAFQAPFGGYKMSGQGREFGHYGLEAFLEVKT 488          
BLAST of CN181497 vs. ExPASy Swiss-Prot
Match: BETB_PSEMY (Betaine aldehyde dehydrogenase OS=Pseudomonas mendocina (strain ymp) GN=betB PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 9.007e-17
Identity = 41/94 (43.62%), Postives = 61/94 (64.89%), Query Frame = -3
Query:   31 KNEIFGPVMALMKFFFAEKTIKSANNKKNGLAAGIMTKDLNVANTVSRSIRKKIIWINCYFAFDSDCPYGGYKMSGFGRDCGKKSLHHYLQVKS 312
            + EIFGPVM+++ +   E+ I+ AN+   GLAAG++T+DLN A+ V   +   I WIN +    ++ P GGYK SG GR+ G  +L HY ++KS
Sbjct:  385 REEIFGPVMSILIYDSEEEVIRRANDTDYGLAAGVVTRDLNRAHRVIHKLEAGICWINTWGESPAEMPVGGYKQSGVGRENGLVTLGHYTRIKS 478          
BLAST of CN181497 vs. ExPASy Swiss-Prot
Match: AL1A2_TAEGU (Retinal dehydrogenase 2 OS=Taeniopygia guttata GN=ALDH1A2 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 9.007e-17
Identity = 42/95 (44.21%), Postives = 61/95 (64.21%), Query Frame = -3
Query:   31 AKNEIFGPVMALMKFFFAEKTIKSANNKKNGLAAGIMTKDLNVANTVSRSIRKKIIWINCYFAFDSDCPYGGYKMSGFGRDCGKKSLHHYLQVKS 315
            AK EIFGPV  +++F   ++ I+ ANN   GL A + T D+N A TVS +++   +WINCY A ++  P+GG K SG GR+ G+  L  Y +VK+
Sbjct:  414 AKEEIFGPVQEILRFKTMDEVIERANNSDFGLVAAVFTNDINKALTVSSAMQAGTVWINCYNALNAQSPFGGSK-SGNGREMGECGLREYSEVKT 507          
BLAST of CN181497 vs. ExPASy Swiss-Prot
Match: BETB_VIBPA (Betaine aldehyde dehydrogenase OS=Vibrio parahaemolyticus GN=betB PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.176e-16
Identity = 41/99 (41.41%), Postives = 63/99 (63.64%), Query Frame = -3
Query:   16 KNEIFGPVMALMKFFFAEKTIKSANNKKNGLAAGIMTKDLNVANTVSRSIRKKIIWINCYFAFDSDCPYGGYKMSGFGRDCGKKSLHHYLQVKSKMAPI 312
            + EIFGPVM+++KF    + I+ AN+   GLAAG+ T++L+ A+ V   I+  I W+N +    ++ P GGYK SG GR+ G ++L HY Q KS +  +
Sbjct:  380 QQEIFGPVMSVLKFSEEAEVIERANDTDYGLAAGVFTQNLSRAHRVIHKIQAGICWVNAWGDSPAEMPVGGYKQSGIGRENGVETLKHYTQTKSVLVQL 478          
BLAST of CN181497 vs. ExPASy Swiss-Prot
Match: BETB_SERP5 (Betaine aldehyde dehydrogenase OS=Serratia proteamaculans (strain 568) GN=betB PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.176e-16
Identity = 40/94 (42.55%), Postives = 59/94 (62.77%), Query Frame = -3
Query:   31 KNEIFGPVMALMKFFFAEKTIKSANNKKNGLAAGIMTKDLNVANTVSRSIRKKIIWINCYFAFDSDCPYGGYKMSGFGRDCGKKSLHHYLQVKS 312
            + EIFGPVM+++ +   E+ ++ AN+   GLAAG++T DL  A+ V   +   I WIN +    ++ P GGYK SG GR+ G  +L HY Q+KS
Sbjct:  385 REEIFGPVMSILSYQSEEEVVRRANDTTFGLAAGVVTNDLTRAHRVIHQLEAGICWINTWGESAAEMPVGGYKQSGVGRENGLMTLEHYTQIKS 478          
BLAST of CN181497 vs. ExPASy Swiss-Prot
Match: BETB_RHOS4 (Betaine aldehyde dehydrogenase OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=betB PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.176e-16
Identity = 42/95 (44.21%), Postives = 58/95 (61.05%), Query Frame = -3
Query:   31 AKNEIFGPVMALMKFFFAEKTIKSANNKKNGLAAGIMTKDLNVANTVSRSIRKKIIWINCYFAFDSDCPYGGYKMSGFGRDCGKKSLHHYLQVKS 315
            A+ E+FGPVMA++ F   E+ I  AN    GLAAG+ T DL  A+ V   ++    WIN Y     + P+GG K+SG GR+ G+ ++ HY QVKS
Sbjct:  377 AREEVFGPVMAVLDFETEEEAIARANATDFGLAAGVFTADLTRAHRVVAQLQAGTCWINAYNLTPVEAPFGGVKLSGVGRENGRAAVQHYTQVKS 471          
BLAST of CN181497 vs. ExPASy Swiss-Prot
Match: BETB_RHOS1 (Betaine aldehyde dehydrogenase OS=Rhodobacter sphaeroides (strain ATCC 17029 / ATH 2.4.9) GN=betB PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.176e-16
Identity = 42/95 (44.21%), Postives = 58/95 (61.05%), Query Frame = -3
Query:   31 AKNEIFGPVMALMKFFFAEKTIKSANNKKNGLAAGIMTKDLNVANTVSRSIRKKIIWINCYFAFDSDCPYGGYKMSGFGRDCGKKSLHHYLQVKS 315
            A+ E+FGPVMA++ F   E+ I  AN    GLAAG+ T DL  A+ V   ++    WIN Y     + P+GG K+SG GR+ G+ ++ HY QVKS
Sbjct:  377 AREEVFGPVMAVLDFETEEEAIARANATDFGLAAGVFTADLTRAHRVVAQLQAGTCWINAYNLTPVEAPFGGVKLSGVGRENGRAAVEHYTQVKS 471          
The following BLAST results are available for this feature:
BLAST of CN181497 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 277
Match NameE-valueIdentityDescription
AL9A1_ORYLA5.280e-1743.62Aldehyde dehydrogenase family 9 member A1 OS=Oryzi... [more]
BETB_PECCP6.896e-1743.62Betaine aldehyde dehydrogenase OS=Pectobacterium c... [more]
BETB_ECOSM6.896e-1745.74Betaine aldehyde dehydrogenase OS=Escherichia coli... [more]
ALDH_ENCBU6.896e-1743.16Aldehyde dehydrogenase OS=Enchytraeus buchholzi GN... [more]
BETB_PSEMY9.007e-1743.62Betaine aldehyde dehydrogenase OS=Pseudomonas mend... [more]
AL1A2_TAEGU9.007e-1744.21Retinal dehydrogenase 2 OS=Taeniopygia guttata GN=... [more]
BETB_VIBPA1.176e-1641.41Betaine aldehyde dehydrogenase OS=Vibrio parahaemo... [more]
BETB_SERP51.176e-1642.55Betaine aldehyde dehydrogenase OS=Serratia proteam... [more]
BETB_RHOS41.176e-1644.21Betaine aldehyde dehydrogenase OS=Rhodobacter spha... [more]
BETB_RHOS11.176e-1644.21Betaine aldehyde dehydrogenase OS=Rhodobacter spha... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001A15_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001A15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181497 ID=CN181497; Name=CN181497; organism=Citrus sinensis; type=EST; length=317bp
CCTTTTCTCAAAAAAAATGGGAGCCATTTTGGACTTGACCTGCAGATAGT
GATGTAGAGATTTTTTTCCACAGTCTCGACCAAATCCACTCATCTTGTAT
CCTCCGTAAGGGCAGTCGCTGTCAAAAGCAAAATAACAATTGATCCATAT
AATTTTTTTTCGAATTGATCTAGAGACGGTATTAGCCACATTCAAGTCCT
TTGTCATAATGCCTGCTGCTAGGCCATTTTTTTTATTATTTGCACTCTTA
ATTGTTTTTTCGGCAAAAAAAAATTTCATCAATGCCATCACAGGTCCGAA
AATTTCATTCTTTGCTA
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