CN181496

Overview
NameCN181496
Unique NameCN181496
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length656
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12923 contig Csv1_Contig12923:24..680. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN181496 vs. ExPASy Swiss-Prot
Match: CHIT_PHAVU (Endochitinase OS=Phaseolus vulgaris PE=1 SV=1)

HSP 1 Score: 226.483 bits (576), Expect = 9.650e-59
Identity = 107/174 (61.49%), Postives = 127/174 (72.99%), Query Frame = 1
Query:  145 ELGKIISREMFDDLLEYRNDERCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFISEVSPPSDYCD--PNYPCR--GKYYGRGPIQLSWNYNYLRCXXXXXXXXXXXNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVI 654
            +L  +ISR  FD +L++RND  CPA+GFYTYDAFI AA+A+P FGN+G+   RKREIAAF  QT HETTGGW  AP G YAWGYCF+ E + PS YC   P +PC    +YYGRGPIQ+SWNYNY +C           N PDL+ATD V+SFKSA+WFWMTAQ PKPS H+VI
Sbjct:   75 DLSALISRSTFDQMLKHRNDGACPAKGFYTYDAFIAAAKAYPSFGNTGDTATRKREIAAFLGQTSHETTGGWATAPDGPYAWGYCFVRERN-PSTYCSATPQFPCAPGQQYYGRGPIQISWNYNYGQC--GRAIGVDLLNKPDLVATDSVISFKSALWFWMTAQSPKPSSHDVI 245          
BLAST of CN181496 vs. ExPASy Swiss-Prot
Match: CHIT_SOLTU (Endochitinase OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 226.098 bits (575), Expect = 1.260e-58
Identity = 105/174 (60.34%), Postives = 126/174 (72.41%), Query Frame = 1
Query:  145 ELGKIISREMFDDLLEYRNDERCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFISEVSPPSDYCDPN--YPCR--GKYYGRGPIQLSWNYNYLRCXXXXXXXXXXXNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVI 654
            +LG  IS  MFD +L++RN+  C  + FY+Y+AFI AA++FPGFG SG+   RKREIAAFFAQT HETTGGW  AP G YAWGYCF+ E   P DYC P+  +PC    KY+GRGPIQ+S NYNY  C           NNPDL+ATDPV+SFK+A+WFWMT Q PKPSCH+VI
Sbjct:   78 DLGSAISNSMFDQMLKHRNENSCQGKNFYSYNAFINAARSFPGFGTSGDINARKREIAAFFAQTSHETTGGWASAPDGPYAWGYCFLRERGNPGDYCPPSSQWPCAPGRKYFGRGPIQISHNYNYGPC--GRAIGVDLLNNPDLVATDPVISFKTALWFWMTPQSPKPSCHDVI 249          
BLAST of CN181496 vs. ExPASy Swiss-Prot
Match: CHI5_PHAVU (Endochitinase CH5B OS=Phaseolus vulgaris PE=3 SV=1)

HSP 1 Score: 225.713 bits (574), Expect = 1.646e-58
Identity = 107/174 (61.49%), Postives = 127/174 (72.99%), Query Frame = 1
Query:  145 ELGKIISREMFDDLLEYRNDERCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFISEVSPPSDYCD--PNYPCR--GKYYGRGPIQLSWNYNYLRCXXXXXXXXXXXNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVI 654
            +L  +ISR  FD +L++RND  CPA+GFYTYDAFI AA+A+P FGN+G+   RKREIAAF  QT HETTGGW  AP G YAWGYCF+ E + PS YC   P +PC    +YYGRGPIQ+SWNYNY +C           N PDL+ATD V+SFKSA+WFWMTAQ PKPS H+VI
Sbjct:   74 DLSALISRSTFDQVLKHRNDGACPAKGFYTYDAFIAAAKAYPSFGNTGDTATRKREIAAFLGQTSHETTGGWATAPDGPYAWGYCFVRERN-PSAYCSATPQFPCAPGQQYYGRGPIQISWNYNYGQC--GRAIGVDLLNKPDLVATDSVISFKSALWFWMTAQSPKPSSHDVI 244          
BLAST of CN181496 vs. ExPASy Swiss-Prot
Match: CHIC_SOLLC (Basic 30 kDa endochitinase OS=Solanum lycopersicum GN=CHI9 PE=1 SV=1)

HSP 1 Score: 225.328 bits (573), Expect = 2.150e-58
Identity = 107/175 (61.14%), Postives = 126/175 (72.00%), Query Frame = 1
Query:  145 ELGKIISREMFDDLLEYRNDERCPARG-FYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFISEVSPPSDYCDPN--YPCR--GKYYGRGPIQLSWNYNYLRCXXXXXXXXXXXNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVI 654
            +LG +IS  MFD +L +RND  C  +  FY+Y+AF+ AA +FPGFG +G+ T RKREIAAF AQT HETTGGWP AP G YAWGYCF+ E   P DYC P+  +PC    KY+GRGPIQ+S NYNY  C           NNPDL+ATDPV+SFKSAIWFWMT Q PKPSCH+VI
Sbjct:   71 DLGGVISNSMFDQMLNHRNDNACQGKNNFYSYNAFVTAAGSFPGFGTTGDITARKREIAAFLAQTSHETTGGWPTAPDGPYAWGYCFLREQGSPGDYCTPSSQWPCAPGRKYFGRGPIQISHNYNYGPC--GRAIGVDLLNNPDLVATDPVISFKSAIWFWMTPQSPKPSCHDVI 243          
BLAST of CN181496 vs. ExPASy Swiss-Prot
Match: CHI2_SOLTU (Endochitinase 2 (Fragment) OS=Solanum tuberosum GN=CHTB2 PE=2 SV=1)

HSP 1 Score: 224.557 bits (571), Expect = 3.667e-58
Identity = 107/175 (61.14%), Postives = 126/175 (72.00%), Query Frame = 1
Query:  145 ELGKIISREMFDDLLEYRNDERCPARG-FYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFISEVSPPSDYCDPN--YPCR--GKYYGRGPIQLSWNYNYLRCXXXXXXXXXXXNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVI 654
            +LG +IS  MFD +L +RND  C  +G FY+Y+AFI AA +FPGFG +G+ T RKREIAAFFAQT HETTGGW  AP G YAWGYCF+ E   P DYC P+  +PC    KY+GRGPIQ+S NYNY  C           NNPDL+ATD ++SFKSAIWFWMT Q PKPSCH+VI
Sbjct:   65 DLGGVISNSMFDQMLNHRNDNACQGKGNFYSYNAFISAAGSFPGFGTTGDITARKREIAAFFAQTSHETTGGWASAPDGPYAWGYCFLREQGSPGDYCTPSNQWPCAPGRKYFGRGPIQISHNYNYGPC--GRAIGVDLLNNPDLVATDSIISFKSAIWFWMTPQSPKPSCHDVI 237          
BLAST of CN181496 vs. ExPASy Swiss-Prot
Match: CHI3_SOLTU (Endochitinase 3 (Fragment) OS=Solanum tuberosum GN=CHTB3 PE=2 SV=1)

HSP 1 Score: 223.402 bits (568), Expect = 8.169e-58
Identity = 107/175 (61.14%), Postives = 125/175 (71.43%), Query Frame = 1
Query:  145 ELGKIISREMFDDLLEYRNDERCPARG-FYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFISEVSPPSDYCDPN--YPCR--GKYYGRGPIQLSWNYNYLRCXXXXXXXXXXXNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVI 654
            +LG +IS  MFD +L +RND  C  +  FY+Y+AFI AA +FPGFG +G+ T RKREIAAF AQT HETTGGWP AP G YAWGYCF+ E   P DYC P+  +PC    KY+GRGPIQ+S NYNY  C           NNPDL+ATD V+SFKSAIWFWMT Q PKPSCH+VI
Sbjct:   67 DLGGVISNSMFDQMLNHRNDNACQGKNNFYSYNAFISAAGSFPGFGTTGDITARKREIAAFLAQTSHETTGGWPSAPDGPYAWGYCFLREQGSPGDYCTPSSQWPCAPGRKYFGRGPIQISHNYNYGPC--GRAIGVDLLNNPDLVATDSVISFKSAIWFWMTPQSPKPSCHDVI 239          
BLAST of CN181496 vs. ExPASy Swiss-Prot
Match: CHI6_POPTR (Acidic endochitinase WIN6 OS=Populus trichocarpa GN=WIN6 PE=2 SV=2)

HSP 1 Score: 221.861 bits (564), Expect = 2.377e-57
Identity = 108/173 (62.43%), Postives = 124/173 (71.68%), Query Frame = 1
Query:  148 LGKIISREMFDDLLEYRNDERCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFISEVSPPSDYCDP--NYPC-RGKYY-GRGPIQLSWNYNYLRCXXXXXXXXXXXNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVI 654
            L  II +  FD LL++RND RCPA GFYTY+AFI AA+ FP FGN+G++ MRKREIAAF  QT HETTGGWPDAP G YAWGYC++ E++    YCDP  NY C  GK Y GRGPIQLSWNYNY  C             P+L+ TDPV+SFK+AIWFWM  Q PKPSCH VI
Sbjct:   89 LSDIIPKSKFDALLKFRNDARCPAAGFYTYNAFISAAKEFPDFGNTGDDLMRKREIAAFLGQTSHETTGGWPDAPCGPYAWGYCYLKEIN-CQPYCDPSSNYQCVAGKQYCGRGPIQLSWNYNYGLC--GDDLKLPLLQEPELVETDPVISFKTAIWFWMKPQSPKPSCHAVI 258          
BLAST of CN181496 vs. ExPASy Swiss-Prot
Match: CHI1_THECC (Endochitinase 1 OS=Theobroma cacao GN=CHIA1 PE=2 SV=1)

HSP 1 Score: 221.861 bits (564), Expect = 2.377e-57
Identity = 109/175 (62.29%), Postives = 129/175 (73.71%), Query Frame = 1
Query:  148 LGKIISREMFDDLLEYRNDERCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTG--GWPDAPGGEYAWGYCFISEVSPPSDYC--DPNYPCR-GK-YYGRGPIQLSWNYNYLRCXXXXXXXXXXXNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVI 654
            L  +I+RE FD +L +RND  CPARGFYTYDAFI AA++FP F  +G++  RKRE+AAF AQT HETTG  GW  AP G Y WGYC+  E++ P+DYC  DPNYPC  GK Y+GRGP+QL+WNYNY +C           NNPDLLATDP +SFKSA WFWMT Q PKPSCH+VI
Sbjct:   72 LDSLITRERFDQMLLHRNDGGCPARGFYTYDAFIAAAKSFPAFATTGDDATRKREVAAFLAQTSHETTGGAGWA-APDGPYTWGYCYNRELN-PADYCQWDPNYPCAPGKQYFGRGPMQLTWNYNYGQC--GRAIGVDLLNNPDLLATDPTISFKSAFWFWMTPQSPKPSCHDVI 242          
BLAST of CN181496 vs. ExPASy Swiss-Prot
Match: CHI3_TOBAC (Endochitinase 3 OS=Nicotiana tabacum GN=CHN14 PE=3 SV=1)

HSP 1 Score: 219.935 bits (559), Expect = 9.032e-57
Identity = 103/174 (59.20%), Postives = 124/174 (71.26%), Query Frame = 1
Query:  145 ELGKIISREMFDDLLEYRNDERCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFISEVSPPSDYC--DPNYPCR--GKYYGRGPIQLSWNYNYLRCXXXXXXXXXXXNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVI 654
            ++  IIS  MFD +L++RND  C  + FYTY+AFI AA++F GFG +G+ T RKRE+AAFFAQT HETTGGW  AP G YAWGYC++ E   P  YC     +PC    KYYGRGPIQ+S+NYNY  C           NNPDL+AT+ V+SFKSAIWFWMTAQ PKPSCH+VI
Sbjct:   84 DISNIISSSMFDQMLKHRNDNTCQGKSFYTYNAFITAARSFRGFGTTGDTTRRKREVAAFFAQTSHETTGGWDTAPDGRYAWGYCYLREQGNPPSYCVQSSQWPCAPGQKYYGRGPIQISYNYNYGPC--GRAIGQNLLNNPDLVATNAVVSFKSAIWFWMTAQSPKPSCHDVI 255          
BLAST of CN181496 vs. ExPASy Swiss-Prot
Match: CHI2_PEA (Endochitinase A2 OS=Pisum sativum GN=CHI2 PE=1 SV=2)

HSP 1 Score: 219.935 bits (559), Expect = 9.032e-57
Identity = 101/173 (58.38%), Postives = 125/173 (72.25%), Query Frame = 1
Query:  148 LGKIISREMFDDLLEYRNDERCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFISEVSPPSDYCDPN--YPCRG--KYYGRGPIQLSWNYNYLRCXXXXXXXXXXXNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVI 654
            L  +IS + F+++L++RND  C  + FYTYDAF+ AA+AFP F N G+   +KREIAAF  QT HETTGGWP AP G YAWGYCF+ E + PS YC  +  +PC    +YYGRGPIQ+SWNYNY +C           NNPDL+ATDPV+SFK+A+WFWMT Q PKPSCH+VI
Sbjct:   68 LSSLISGDTFNNMLKHRNDNACQGKPFYTYDAFLSAAKAFPNFANKGDTATKKREIAAFLGQTSHETTGGWPTAPDGPYAWGYCFLREQN-PSTYCQASSEFPCASGKQYYGRGPIQISWNYNYGQC--GRAIGVDLLNNPDLVATDPVISFKTALWFWMTPQSPKPSCHDVI 237          
The following BLAST results are available for this feature:
BLAST of CN181496 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
CHIT_PHAVU9.650e-5961.49Endochitinase OS=Phaseolus vulgaris PE=1 SV=1[more]
CHIT_SOLTU1.260e-5860.34Endochitinase OS=Solanum tuberosum PE=2 SV=1[more]
CHI5_PHAVU1.646e-5861.49Endochitinase CH5B OS=Phaseolus vulgaris PE=3 SV=1[more]
CHIC_SOLLC2.150e-5861.14Basic 30 kDa endochitinase OS=Solanum lycopersicum... [more]
CHI2_SOLTU3.667e-5861.14Endochitinase 2 (Fragment) OS=Solanum tuberosum GN... [more]
CHI3_SOLTU8.169e-5861.14Endochitinase 3 (Fragment) OS=Solanum tuberosum GN... [more]
CHI6_POPTR2.377e-5762.43Acidic endochitinase WIN6 OS=Populus trichocarpa G... [more]
CHI1_THECC2.377e-5762.29Endochitinase 1 OS=Theobroma cacao GN=CHIA1 PE=2 S... [more]
CHI3_TOBAC9.032e-5759.20Endochitinase 3 OS=Nicotiana tabacum GN=CHN14 PE=3... [more]
CHI2_PEA9.032e-5758.38Endochitinase A2 OS=Pisum sativum GN=CHI2 PE=1 SV=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001A14_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001A14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181496 ID=CN181496; Name=CN181496; organism=Citrus sinensis; type=EST; length=656bp
GAGGGTTGCTTTCAAATGAGGCTTATTGGGTCCTTACTAATTTTCTCTCT
AGTTTTATCTTTTGTACTAGGAGGCTCAGCACAGAACTGTGGAAGCGGCG
TTGTGTACGGTGGACGTGATACCGGCCATGGGACGCATGGCGGTGAACTG
GGCAAGATCATCTCAAGGGAGATGTTTGATGACTTGCTTGAGTATAGAAA
TGATGAACGATGCCCTGCCAGAGGCTTCTACACTTATGATGCTTTTATAG
AGGCAGCCCAAGCTTTTCCAGGCTTTGGTAACTCTGGAAATGAAACCATG
CGTAAAAGAGAAATCGCTGCCTTTTTTGCCCAAACTGGCCATGAAACTAC
TGGGGGATGGCCCGATGCACCTGGTGGCGAATATGCTTGGGGATATTGCT
TTATAAGCGAAGTTAGCCCTCCGTCCGACTACTGTGATCCTAACTATCCA
TGTCGAGGGAAGTACTATGGCCGAGGTCCAATTCAACTCTCTTGGAATTA
CAATTACTTACGGTGCGGAGAAGGCCTAGGGCTAGGAGAGGAGTTGTTGA
ACAATCCAGACCTTCTTGCTACTGATCCAGTACTATCATTCAAGTCAGCA
ATCTGGTTCTGGATGACTGCACAGCCACCAAAGCCATCGTGCCACGAAGT
CATTAT
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