CN181495

Overview
NameCN181495
Unique NameCN181495
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length661
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN181495 vs. ExPASy Swiss-Prot
Match: PIP23_MAIZE (Aquaporin PIP2-3 OS=Zea mays GN=PIP2-3 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.612e-13
Identity = 42/109 (38.53%), Postives = 62/109 (56.88%), Query Frame = -1
Query:  278 LSSGVGAWNAVVFEIVMTFGLVYTVYATALDPKKGS----LGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALV---SWSWDNHWVYWVGPLIGGGLAGIVYEF 583
            LS G      +  EI+ TF LVYTV++ A DPK+ +    +  +AP+ IGF V    LA     G  +NPA S G A++     +WD+ W++WVGPLIG  +A   +++
Sbjct:  166 LSDGYSKGTGLAAEIIGTFVLVYTVFS-ATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWIFWVGPLIGAAIAAAYHQY 273          
BLAST of CN181495 vs. ExPASy Swiss-Prot
Match: PIP28_ARATH (Probable aquaporin PIP2-8 OS=Arabidopsis thaliana GN=PIP2-8 PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.717e-13
Identity = 42/112 (37.50%), Postives = 64/112 (57.14%), Query Frame = -1
Query:  278 AFALSSGVGAWNAVVFEIVMTFGLVYTVYATALDPKKGS----LGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALV---SWSWDNHWVYWVGPLIGGGLAGIVYEF 592
            A  ++ G     A+  EI+ TF LVYTV++ A DPK+ +    +  +AP+ IGF V    LA     G  +NPA SFG A++     +WD+HW++WVGP +G   A   +++
Sbjct:  149 ANTVADGYSTGTALGAEIIGTFVLVYTVFS-ATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNEKAWDDHWIFWVGPFVGALAAAAYHQY 259          
BLAST of CN181495 vs. ExPASy Swiss-Prot
Match: PIP22_ORYSJ (Probable aquaporin PIP2-2 OS=Oryza sativa subsp. japonica GN=PIP2-2 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.161e-13
Identity = 42/109 (38.53%), Postives = 62/109 (56.88%), Query Frame = -1
Query:  278 LSSGVGAWNAVVFEIVMTFGLVYTVYATALDPKKGS----LGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALV---SWSWDNHWVYWVGPLIGGGLAGIVYEF 583
            LS G      +  EI+ TF LVYTV++ A DPK+ +    +  +AP+ IGF V    LA     G  +NPA S G A++     +WD+ W++WVGPLIG  +A   +++
Sbjct:  165 LSDGYSKGTGLGAEIIGTFVLVYTVFS-ATDPKRNARDSHIPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGTAVIYNKDKAWDDQWIFWVGPLIGAAIAAAYHQY 272          
BLAST of CN181495 vs. ExPASy Swiss-Prot
Match: PIP14_ARATH (Probable aquaporin PIP1-4 OS=Arabidopsis thaliana GN=PIP1.4 PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.161e-13
Identity = 44/110 (40.00%), Postives = 63/110 (57.27%), Query Frame = -1
Query:  281 FALSSGVGAWNAVVFEIVMTFGLVYTVYATALDPKKGSLGT----IAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALV---SWSWDNHWVYWVGPLIGGGLAGIVYE 589
            +   SG+GA      EI+ TF LVYTV++ A D K+ +  +    +AP+ IGF V    LA     G  +NPA S G A++     SWD+HW++WVGP IG  LA + ++
Sbjct:  173 YTKGSGLGA------EIIGTFVLVYTVFS-ATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDHSWDDHWIFWVGPFIGAALAALYHQ 275          
BLAST of CN181495 vs. ExPASy Swiss-Prot
Match: NIP21_MAIZE (Aquaporin NIP2-1 OS=Zea mays GN=NIP2-1 PE=2 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 6.161e-13
Identity = 41/118 (34.75%), Postives = 66/118 (55.93%), Query Frame = -1
Query:  308 AQLLGSTVACLLLKFVTNGQTTSAFALSSGVGAWNAVVFEIVMTFGLVYTVYATALDPKKGSLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALVSWSWDNHWVYWVGPLIG 661
            AQ  GS  A  +LK V +          +G   W+++V EI++TF +++   A A D +  ++G +A +A+G  V    +  GA  G SMNPA + GPAL S  +   W+Y++GP++G
Sbjct:  130 AQFTGSICASFVLKAVLHPIAVLGTTTPTGPH-WHSLVIEIIVTFNMMFVTLAVATDTR--AVGELAGLAVGSAVCITSIFAGAVSGGSMNPARTLGPALASNLYTGLWIYFLGPVLG 244          
BLAST of CN181495 vs. ExPASy Swiss-Prot
Match: NIP12_ORYSJ (Aquaporin NIP1-2 OS=Oryza sativa subsp. japonica GN=NIP1-2 PE=2 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 6.161e-13
Identity = 46/124 (37.10%), Postives = 65/124 (52.42%), Query Frame = -1
Query:  308 AQLLGSTVACLLLKFVTNGQTTSA------FALSSGVGAWNAVVFEIVMTFGLVYTVYATALDPKKGSLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALVSWSWDNHWVYWVGPLIG 661
            AQ+LGST+A L L+ V  G    A      F  +       A   E V++F L++ V   A D +  ++G +A +A+G  V  N+L  G   GASMNPA S GPA+V+  +   WVY   P+ G
Sbjct:  147 AQVLGSTMASLTLRVVFGGGGGGARGEHLFFGTTPAGSMAQAAALEFVISFFLMFVVSGVATDNR--AIGELAGLAVGATVAVNVLFAGPVTGASMNPARSLGPAMVAGRYGGVWVYVAAPVSG 268          
BLAST of CN181495 vs. ExPASy Swiss-Prot
Match: PIP11_VICFA (Aquaporin PIP1.1 OS=Vicia faba GN=PIP1.1 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 8.047e-13
Identity = 45/109 (41.28%), Postives = 62/109 (56.88%), Query Frame = -1
Query:  284 FALSSGVGAWNAVVFEIVMTFGLVYTVYATALDPKKGSLGT----IAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALV---SWSWDNHWVYWVGPLIGGGLAGIVY 589
            +   SG+GA      EI+ TF LVYTV++ A D K+ +  +    +AP+ IGF V    LA     G  +NPA S G A++     SWD+HWV+WVGP IG  LA + +
Sbjct:  172 YTKGSGLGA------EIIGTFVLVYTVFS-ATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDHSWDDHWVFWVGPFIGAALAALYH 273          
BLAST of CN181495 vs. ExPASy Swiss-Prot
Match: PIP11_ARATH (Aquaporin PIP1-1 OS=Arabidopsis thaliana GN=PIP1-1 PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 8.047e-13
Identity = 45/109 (41.28%), Postives = 62/109 (56.88%), Query Frame = -1
Query:  284 FALSSGVGAWNAVVFEIVMTFGLVYTVYATALDPKKGSLGT----IAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALV---SWSWDNHWVYWVGPLIGGGLAGIVY 589
            +   SG+GA      EI+ TF LVYTV++ A D K+ +  +    +AP+ IGF V    LA     G  +NPA S G A++     SWD+HWV+WVGP IG  LA + +
Sbjct:  172 YTKGSGLGA------EIIGTFVLVYTVFS-ATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDHSWDDHWVFWVGPFIGAALAALYH 273          
BLAST of CN181495 vs. ExPASy Swiss-Prot
Match: PIP15_ARATH (Probable aquaporin PIP1-5 OS=Arabidopsis thaliana GN=PIP1-5 PE=2 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 1.051e-12
Identity = 44/110 (40.00%), Postives = 63/110 (57.27%), Query Frame = -1
Query:  281 FALSSGVGAWNAVVFEIVMTFGLVYTVYATALDPKKGSLGT----IAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALV---SWSWDNHWVYWVGPLIGGGLAGIVYE 589
            +   SG+GA      EIV TF LVYTV++ A D K+ +  +    +AP+ IGF V    LA     G  +NPA S G A++     +WD+HW++WVGP IG  LA + ++
Sbjct:  173 YTKGSGLGA------EIVGTFVLVYTVFS-ATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDHAWDDHWIFWVGPFIGAALAALYHQ 275          
BLAST of CN181495 vs. ExPASy Swiss-Prot
Match: PIP15_MAIZE (Aquaporin PIP1-5 OS=Zea mays GN=PIP1-5 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.373e-12
Identity = 46/115 (40.00%), Postives = 65/115 (56.52%), Query Frame = -1
Query:  284 GQTTSAFALSSGVGAWNAVVFEIVMTFGLVYTVYATALDPKKGSLGT----IAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALV---SWSWDNHWVYWVGPLIGGGLAGIVY 607
            G    A A++ G    + +  EIV TF LVYTV++ A D K+ +  +    +AP+ IGF V    LA     G  +NPA S G A+V   S +W++HW++WVGP IG  LA I +
Sbjct:  162 GAGGGANAVNPGYTKGDGLGAEIVGTFVLVYTVFS-ATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIVYNRSHAWNDHWIFWVGPFIGAALAAIYH 275          
The following BLAST results are available for this feature:
BLAST of CN181495 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 148
Match NameE-valueIdentityDescription
PIP23_MAIZE3.612e-1338.53Aquaporin PIP2-3 OS=Zea mays GN=PIP2-3 PE=2 SV=1[more]
PIP28_ARATH4.717e-1337.50Probable aquaporin PIP2-8 OS=Arabidopsis thaliana ... [more]
PIP22_ORYSJ6.161e-1338.53Probable aquaporin PIP2-2 OS=Oryza sativa subsp. j... [more]
PIP14_ARATH6.161e-1340.00Probable aquaporin PIP1-4 OS=Arabidopsis thaliana ... [more]
NIP21_MAIZE6.161e-1334.75Aquaporin NIP2-1 OS=Zea mays GN=NIP2-1 PE=2 SV=2[more]
NIP12_ORYSJ6.161e-1337.10Aquaporin NIP1-2 OS=Oryza sativa subsp. japonica G... [more]
PIP11_VICFA8.047e-1341.28Aquaporin PIP1.1 OS=Vicia faba GN=PIP1.1 PE=2 SV=1[more]
PIP11_ARATH8.047e-1341.28Aquaporin PIP1-1 OS=Arabidopsis thaliana GN=PIP1-1... [more]
PIP15_ARATH1.051e-1240.00Probable aquaporin PIP1-5 OS=Arabidopsis thaliana ... [more]
PIP15_MAIZE1.373e-1240.00Aquaporin PIP1-5 OS=Zea mays GN=PIP1-5 PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001A13_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001A13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181495 ID=CN181495; Name=CN181495; organism=Citrus sinensis; type=EST; length=661bp
GAGGGGTTAATGAAATAGACATCAAGCCAATTGAAGCGAGAGTAGAAAGA
CAAAGCCATAGCCTGGGACTCCATAATTATCGCGATACAATAATCCAGCA
GCTCATGACGATGGAAACAGATCAACGGCCATAAATTAAACACAAATTAA
AAATAAAAAGAAAGAACCTCGGTAAAAGCAAATTAAATACAACATCCGTG
CAAACTCACATAGATGGCAAGCTTTTAGCTTAGTACTCGGTTGTTGGGAG
CTGCTCATGCGACTGGTTAATGAAGAAGAACTCGTAGACGATGCCAGCTA
GCCCACCACCGATGAGTGGCCCGACCCAGTAGACCCAGTGGTTGTCCCAG
CTCCAGCTCACCAAAGCTGGCCCGAATGACACTGCTGGGTTCATTGAAGC
TCCATCAAACGCCCCGCCCGCCAAGATGTTGGCTCCTACAATGAAACCAA
TTGCAATTGGTGCAATTGTCCCCAAGCTTCCCTTCTTTGGGTCCAGGGCT
GTGGCATACACTGTGTACACTAGTCCGAATGTCATCACGATCTCGAAAAC
GACTGCGTTCCATGCACCAACTCCAGATGAGAGAGCAAAAGCAGATGTGG
TCTGGCCGTTGGTAACGAACTTAAGAAGCAAGCATGCGACGGTGGATCCA
AGAAGCTGGGC
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