CN181495

Overview
NameCN181495
Unique NameCN181495
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length661
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN181495 vs. ExPASy Swiss-Prot
Match: PIP13_ARATH (Aquaporin PIP1-3 OS=Arabidopsis thaliana GN=PIP1-3 PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.373e-12
Identity = 43/110 (39.09%), Postives = 63/110 (57.27%), Query Frame = -1
Query:  281 FALSSGVGAWNAVVFEIVMTFGLVYTVYATALDPKKGSLGT----IAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALV---SWSWDNHWVYWVGPLIGGGLAGIVYE 589
            +   SG+GA      EI+ TF LVYTV++ A D K+ +  +    +AP+ IGF V    LA     G  +NPA S G A++     +WD+HW++WVGP IG  LA + ++
Sbjct:  172 YTKGSGLGA------EIIGTFVLVYTVFS-ATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDHAWDDHWIFWVGPFIGAALAALYHQ 274          
BLAST of CN181495 vs. ExPASy Swiss-Prot
Match: NIP31_ARATH (Aquaporin NIP3-1 OS=Arabidopsis thaliana GN=NIP3-1 PE=2 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 1.373e-12
Identity = 48/125 (38.40%), Postives = 68/125 (54.40%), Query Frame = -1
Query:  308 AQLLGSTVACLLLKFVTN-GQTTSAFALSSGVGAW------NAVVFEIVMTFGLVYTVYATALDPKKGSLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALVSWSWDNHWVYWVGPLIG 661
            AQLLGST+A  +L+ V +      +      VG +       + V E + TF L++ + A A D  K + G+ A IAIG  +  +IL  G   GASMNPA S GPAL+   + + W+Y V P+IG
Sbjct:  126 AQLLGSTLAAAVLRLVFHLDDDVCSLKGDVYVGTYPSNSNTTSFVMEFIATFNLMFVISAVATD--KRATGSFAGIAIGATIVLDILFSGPISGASMNPARSLGPALIWGCYKDLWLYIVSPVIG 248          
BLAST of CN181495 vs. ExPASy Swiss-Prot
Match: PIP25_ORYSJ (Aquaporin PIP2-5 OS=Oryza sativa subsp. japonica GN=PIP2-5 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.793e-12
Identity = 48/138 (34.78%), Postives = 72/138 (52.17%), Query Frame = -1
Query:  281 AQLLGSTVACLLLKFVTNG----QTTSAFALSSGVGAWNAVVFEIVMTFGLVYTVYATALDPKKGS----LGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALV---SWSWDNHWVYWVGPLIGGGLAGIVYE 661
            AQ LG+     L+K   +         A  L++G      +  EI+ TF LVYTV++ A DPK+ +    +  +AP+ IGF V    LA     G  +NPA S G A+V   S +W + W++WVGP IG  +A + ++
Sbjct:  130 AQCLGAVCGVALVKGFQSSFYDRYGGGANELAAGYSKGTGLAAEIIGTFVLVYTVFS-ATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPVTGTGINPARSLGAAVVYNNSKAWSDQWIFWVGPFIGAAIAALYHQ 266          
BLAST of CN181495 vs. ExPASy Swiss-Prot
Match: PIP12_ORYSJ (Probable aquaporin PIP1-2 OS=Oryza sativa subsp. japonica GN=PIP1-2 PE=2 SV=3)

HSP 1 Score: 72.7886 bits (177), Expect = 1.793e-12
Identity = 50/137 (36.50%), Postives = 74/137 (54.01%), Query Frame = -1
Query:  281 QLLGSTVACLLLKFVTNG--QTTSAFA--LSSGVGAWNAVVFEIVMTFGLVYTVYATALDPKKGSLGT----IAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALV---SWSWDNHWVYWVGPLIGGGLAGIVYE 658
            Q LG+     ++K    G  +TT   A  ++ G    + +  EIV TF LVYTV++ A D K+ +  +    +AP+ IGF V    LA     G  +NPA S G A++     +WD+HW++WVGP IG  LA I ++
Sbjct:  141 QCLGAICGAGVVKGFQKGLYETTGGGANVVAPGYTKGDGLGAEIVGTFILVYTVFS-ATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNRGHAWDDHWIFWVGPFIGAALAAIYHQ 276          
BLAST of CN181495 vs. ExPASy Swiss-Prot
Match: PIP27_ARATH (Aquaporin PIP2-7 OS=Arabidopsis thaliana GN=PIP2-7 PE=1 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 2.341e-12
Identity = 44/118 (37.29%), Postives = 65/118 (55.08%), Query Frame = -1
Query:  260 AFALSSGVGAWNAVVFEIVMTFGLVYTVYATALDPKKGS----LGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALV---SWSWDNHWVYWVGPLIGGGLAGIVYEFFFINQS 592
            A  ++ G     A+  EI+ TF LVYTV++ A DPK+ +    +  +AP+ IGF V    LA     G  +NPA SFG A++     +WD+ W++WVGP + G LA   Y  + +  S
Sbjct:  151 ANTVADGYSKGTALGAEIIGTFVLVYTVFS-ATDPKRSARDSHIPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNEKAWDDQWIFWVGPFL-GALAAAAYHQYILRAS 266          
BLAST of CN181495 vs. ExPASy Swiss-Prot
Match: AQPA_DICDI (Aquaporin A OS=Dictyostelium discoideum GN=aqpA PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.341e-12
Identity = 35/101 (34.65%), Postives = 56/101 (55.45%), Query Frame = -1
Query:  284 LSSGVGAWNAVVFEIVMTFGLVYTVYATAL-DPKKGSLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALVSWSWDNHWVYWVGPLIGGGLAGIVY 583
            L+ G+    A + E+++T  L   V  T++ +     L  IAP AIG  +   +  G  F G ++NP    GP+++S  W +HWVYW+GP++G  LA  +Y
Sbjct:  149 LAPGMNTGQAFLMEMMLTSILCLCVLGTSVFNVWDRRLNRIAPFAIGLALFIGVAIGFNFSGGALNPVRVLGPSIISGVWSHHWVYWLGPIVGAILAAFIY 249          
BLAST of CN181495 vs. ExPASy Swiss-Prot
Match: PIP12_ARATH (Aquaporin PIP1-2 OS=Arabidopsis thaliana GN=PIP1-2 PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.058e-12
Identity = 44/109 (40.37%), Postives = 62/109 (56.88%), Query Frame = -1
Query:  284 FALSSGVGAWNAVVFEIVMTFGLVYTVYATALDPKKGSLGT----IAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALV---SWSWDNHWVYWVGPLIGGGLAGIVY 589
            +   SG+GA      EI+ TF LVYTV++ A D K+ +  +    +AP+ IGF V    LA     G  +NPA S G A++     +WD+HWV+WVGP IG  LA + +
Sbjct:  172 YTKGSGLGA------EIIGTFVLVYTVFS-ATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIFNKDNAWDDHWVFWVGPFIGAALAALYH 273          
BLAST of CN181495 vs. ExPASy Swiss-Prot
Match: PIP11_ORYSJ (Aquaporin PIP1-1 OS=Oryza sativa subsp. japonica GN=PIP1-1 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.058e-12
Identity = 43/116 (37.07%), Postives = 65/116 (56.03%), Query Frame = -1
Query:  281 GQTTSAFALSSGVGAWNAVVFEIVMTFGLVYTVYATALDPKKGSLGT----IAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALV---SWSWDNHWVYWVGPLIGGGLAGIVYE 607
            G    A  ++SG    + +  EIV TF LVYTV++ A D K+ +  +    +AP+ IGF V    LA     G  +NPA S G A++     +W++HW++WVGP +G  LA I ++
Sbjct:  163 GNGGGANVVASGYTKGDGLGAEIVGTFILVYTVFS-ATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDHAWNDHWIFWVGPFVGAALAAIYHQ 277          
BLAST of CN181495 vs. ExPASy Swiss-Prot
Match: PIP28_ORYSJ (Probable aquaporin PIP2-8 OS=Oryza sativa subsp. japonica GN=PIP2-8 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.993e-12
Identity = 45/126 (35.71%), Postives = 67/126 (53.17%), Query Frame = -1
Query:  233 LSSGVGAWNAVVFEIVMTFGLVYTVYATALDPKKGS----LGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALV-----SWSWDNHWVYWVGPLIGGGLAGIVYEFFFINQSHEQLPTTEY 583
            L++G  A   VV E+V TF LVYTV++ A DPK+ +    +  +AP+ IG  V    LA     G  +NPA S GPALV     + +W + W++WVGP  G   A I + +     + +   ++ Y
Sbjct:  151 LAAGYSAGAGVVAEMVGTFVLVYTVFS-ATDPKRKARDSHVPVLAPLPIGLAVLVVHLATIPITGTGINPARSLGPALVLGLGTTKAWSHLWIFWVGPFAGAAAAMIYHHYILRGAAAKAFASSSY 275          
BLAST of CN181495 vs. ExPASy Swiss-Prot
Match: PIP27_ORYSJ (Probable aquaporin PIP2-7 OS=Oryza sativa subsp. japonica GN=PIP2-7 PE=2 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 3.993e-12
Identity = 50/149 (33.56%), Postives = 77/149 (51.68%), Query Frame = -1
Query:  248 AQLLGSTVACLLLKFVTNGQTTS----AFALSSGVGAWNAVVFEIVMTFGLVYTVYATALDPKKGS----LGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALV---SWSWDNHWVYWVGPLIGGGLAGIVYEFFFINQSHEQL 661
            AQ LG+     ++K +      +    A  +S G  A  A+  EIV TF LVYTV++ A DPK+ +    +  + P+ IGF V    LA     G  +NPA S G A++     +W +HW++WVGP+IG  LA   ++     ++ + L
Sbjct:  133 AQCLGAIAGAGIVKGIMKRPYDALGGGANTVSDGYSAAGALGAEIVGTFILVYTVFS-ATDPKRTARDSFIPVLVPLPIGFAVFVVHLATIPITGTGINPARSLGAAVLYNQHAAWKDHWIFWVGPVIGAFLAAAYHKLVLRGEAAKAL 280          
The following BLAST results are available for this feature:
BLAST of CN181495 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 148
Match NameE-valueIdentityDescription
PIP13_ARATH1.373e-1239.09Aquaporin PIP1-3 OS=Arabidopsis thaliana GN=PIP1-3... [more]
NIP31_ARATH1.373e-1238.40Aquaporin NIP3-1 OS=Arabidopsis thaliana GN=NIP3-1... [more]
PIP25_ORYSJ1.793e-1234.78Aquaporin PIP2-5 OS=Oryza sativa subsp. japonica G... [more]
PIP12_ORYSJ1.793e-1236.50Probable aquaporin PIP1-2 OS=Oryza sativa subsp. j... [more]
PIP27_ARATH2.341e-1237.29Aquaporin PIP2-7 OS=Arabidopsis thaliana GN=PIP2-7... [more]
AQPA_DICDI2.341e-1234.65Aquaporin A OS=Dictyostelium discoideum GN=aqpA PE... [more]
PIP12_ARATH3.058e-1240.37Aquaporin PIP1-2 OS=Arabidopsis thaliana GN=PIP1-2... [more]
PIP11_ORYSJ3.058e-1237.07Aquaporin PIP1-1 OS=Oryza sativa subsp. japonica G... [more]
PIP28_ORYSJ3.993e-1235.71Probable aquaporin PIP2-8 OS=Oryza sativa subsp. j... [more]
PIP27_ORYSJ3.993e-1233.56Probable aquaporin PIP2-7 OS=Oryza sativa subsp. j... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001A13_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001A13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181495 ID=CN181495; Name=CN181495; organism=Citrus sinensis; type=EST; length=661bp
GAGGGGTTAATGAAATAGACATCAAGCCAATTGAAGCGAGAGTAGAAAGA
CAAAGCCATAGCCTGGGACTCCATAATTATCGCGATACAATAATCCAGCA
GCTCATGACGATGGAAACAGATCAACGGCCATAAATTAAACACAAATTAA
AAATAAAAAGAAAGAACCTCGGTAAAAGCAAATTAAATACAACATCCGTG
CAAACTCACATAGATGGCAAGCTTTTAGCTTAGTACTCGGTTGTTGGGAG
CTGCTCATGCGACTGGTTAATGAAGAAGAACTCGTAGACGATGCCAGCTA
GCCCACCACCGATGAGTGGCCCGACCCAGTAGACCCAGTGGTTGTCCCAG
CTCCAGCTCACCAAAGCTGGCCCGAATGACACTGCTGGGTTCATTGAAGC
TCCATCAAACGCCCCGCCCGCCAAGATGTTGGCTCCTACAATGAAACCAA
TTGCAATTGGTGCAATTGTCCCCAAGCTTCCCTTCTTTGGGTCCAGGGCT
GTGGCATACACTGTGTACACTAGTCCGAATGTCATCACGATCTCGAAAAC
GACTGCGTTCCATGCACCAACTCCAGATGAGAGAGCAAAAGCAGATGTGG
TCTGGCCGTTGGTAACGAACTTAAGAAGCAAGCATGCGACGGTGGATCCA
AGAAGCTGGGC
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