CN188585

Overview
NameCN188585
Unique NameCN188585
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length749
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig242 contig Csv1_Contig242:123..871. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN188585 vs. ExPASy Swiss-Prot
Match: RL10_METMA (50S ribosomal protein L10e OS=Methanosarcina mazei GN=rpl10e PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.467e-21
Identity = 61/143 (42.66%), Postives = 85/143 (59.44%), Query Frame = -3
Query:  319 GVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIV 747
            GVP  ++  YD+G K      FP  + LV+ EK  +   ALEAARI  N+++   AGK  F++++RV+P  VLR NK  + AGADR+ +GMR AFGK  GT ARV   Q L +V  +  N   A++AL  A  K P   +I++
Sbjct:   25 GVPGSQVIHYDMGDKANTT--FPVKISLVAEEKCQIRHTALEAARITANRHLVADAGKMGFYMKLRVYPHEVLRENKQATGAGADRVSSGMRRAFGKNVGTAARVNSMQKLFTVAVEKQNFPAAKKALWHAGQKLPTPVRIVI 165          
BLAST of CN188585 vs. ExPASy Swiss-Prot
Match: RL10_PYRFU (50S ribosomal protein L10e OS=Pyrococcus furiosus GN=rpl10e PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.528e-21
Identity = 58/136 (42.65%), Postives = 75/136 (55.15%), Query Frame = -3
Query:  340 GVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFP 747
            G P PKI I+D+G       +F F V L + E   +   ALEAAR   N+Y+ K  G+  +H ++RV+PF VLR N M +   ADR   GMR  FGKP G  AR+   Q +LS+R    +   A E  RRA  KFP
Sbjct:   25 GAPGPKITIFDMG---NPAGDFEFEVSLHTAEPVQIRQNALEAARQQVNRYLQKNVGRSNYHFKIRVYPFQVLRENPMATGRKADRYGNGMRRPFGKPIGLAARLKKDQKILSIRVNRQHLKFAIEGARRAAMKFP 157          
BLAST of CN188585 vs. ExPASy Swiss-Prot
Match: RL10_PYRHO (50S ribosomal protein L10e OS=Pyrococcus horikoshii GN=rpl10e PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.913e-21
Identity = 58/136 (42.65%), Postives = 75/136 (55.15%), Query Frame = -3
Query:  340 GVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFP 747
            G P PKI I+D+G       +F F V L + E   +   ALEAAR   N+Y+ K  G+  +H ++RV+PF VLR N M +   ADR   GMR  FGKP G  AR+   Q +LS+R    +   A E  RRA  KFP
Sbjct:   25 GAPGPKITIFDMG---NPAGDFEFEVALHTAEPVQIRQNALEAARQQVNRYLQKNVGRSNYHFKIRVYPFQVLRENPMATGRKADRYGNGMRRPFGKPIGLAARLKRDQKILSIRVNRQHLKFAIEGARRAAMKFP 157          
BLAST of CN188585 vs. ExPASy Swiss-Prot
Match: RL10_METS5 (50S ribosomal protein L10e OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.913e-21
Identity = 60/145 (41.38%), Postives = 87/145 (60.00%), Query Frame = -3
Query:  319 GVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDA-FHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVA-IGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIV 747
            GVP PKI  + +G  KK  D   F V L++ +   +   ALEAAR+   K M    G +  F+L V  +P HV+R NKM++ AGADRLQ GMR +FGKP GT AR+  +G +++++R K  +   A++A + A  K P   +I+V
Sbjct:   25 GVPQPKITKFTMGDHKKDYD---FEVRLLTKQIGQIRHNALEAARVIALKQMTSMVGNETDFYLYVTKYPHHVIRENKMMAFAGADRLQDGMRLSFGKPIGTAARITKLGDLIMAIRVKKEHLEFAKKAFKVASSKLPLDTEIVV 166          
BLAST of CN188585 vs. ExPASy Swiss-Prot
Match: RL10_METBU (50S ribosomal protein L10e OS=Methanococcoides burtonii (strain DSM 6242) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 7.723e-21
Identity = 57/145 (39.31%), Postives = 86/145 (59.31%), Query Frame = -3
Query:  313 GVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSR 747
            GVP  ++  +D+G K     +FP  + L++ E+  +   ALEAARI  N+ M   AG+  FH+++RV+P  VLR NK  + AGADR+ +GMR A+GK   T ARV+  Q + ++     +   A++ALRRA  K P    I+V +
Sbjct:   25 GVPGSQVIHFDMGNKTA---DFPVKITLLADERCQIRHTALEAARITANRAMTTAAGRSGFHMKLRVYPHEVLRENKQATGAGADRVSSGMRAAYGKNVSTAARVSARQKIFTISVNKEHFIIAKDALRRAGQKLPTPVTIVVDQ 166          
BLAST of CN188585 vs. ExPASy Swiss-Prot
Match: RL10_METST (50S ribosomal protein L10e OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.009e-20
Identity = 57/151 (37.75%), Postives = 86/151 (56.95%), Query Frame = -3
Query:  292 VPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKF 744
            +P  KI  YD+G       EFP  V L   E  ++S  +LEAARIA N+Y+ +  GK  + L++R +P H++R N M + AGADR+Q+GMRGAFGK   + A V   Q +++   +  +   A+ AL RA  K P   K+++ +     +F
Sbjct:   14 IPASKIVQYDMGNLS---GEFPLEVTLAVKEHTHLSHNSLEAARIAANRYLQRTTGKLGYRLKIRTYPHHIVRENPMATGAGADRVQSGMRGAFGKAVSSEALVRANQKIITAYVQVKDFEKAKVALNRAAMKLPVTCKLVIDKGHDLVQF 161          
BLAST of CN188585 vs. ExPASy Swiss-Prot
Match: RL10_METPE (50S ribosomal protein L10e OS=Methanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.009e-20
Identity = 57/145 (39.31%), Postives = 81/145 (55.86%), Query Frame = -3
Query:  313 GVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSR 747
            GVP  KI  +++G   +   EFP  + L   E   +   ALEAARIA N+ M    G+  FH ++R +P HVLR NK  + AGADR+  GMR AFGK  GT ARV   Q + +V   +     +++ALR   +K P   ++++ R
Sbjct:   25 GVPGSKIVQFEMGNLSQ---EFPVEISLEVLESCQIRHTALEAARIAINRKMMDQVGRANFHFKIRTYPHHVLRENKQATGAGADRVSEGMRMAFGKAVGTAARVQPKQKVFTVYTNEQYIEKSKDALRHGGYKLPSPARLVIER 166          
BLAST of CN188585 vs. ExPASy Swiss-Prot
Match: RL10_METLZ (50S ribosomal protein L10e OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.009e-20
Identity = 57/143 (39.86%), Postives = 84/143 (58.74%), Query Frame = -3
Query:  319 GVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIV 747
            GVP  K+  +D+G      ++FP  +HL + E   +   A+EAARI  N+ + K  G++ FHL++R +P HVLR +K  + AGADR+  GMR AFGK  GT ARVA  Q + +V         A++AL  + +K P   ++IV
Sbjct:   25 GVPGLKVVQFDMGNLS---EDFPVAIHLEALEACQIRHTAMEAARINMNRRLMKTVGRNNFHLKIRAYPHHVLREHKQATGAGADRVSEGMRLAFGKAVGTAARVAPRQRVFTVWTTPQYVDQAKDALLHSGYKLPTPVRVIV 164          
BLAST of CN188585 vs. ExPASy Swiss-Prot
Match: RL10_HALMA (50S ribosomal protein L10e OS=Haloarcula marismortui GN=rpl10e PE=1 SV=2)

HSP 1 Score: 100.523 bits (249), Expect = 1.009e-20
Identity = 55/146 (37.67%), Postives = 84/146 (57.53%), Query Frame = -3
Query:  313 GVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDA-FHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSR 747
            G+P  KI  + +G K+K  D++P  + L+  E   +   +LEA+R++ N+++ K  G++  + + +R  P  VLR NK  + AGADR+  GMR AFGK  GT ARV  G+ L +  C   ++ H +EA RRA  K     +I V R
Sbjct:   25 GIPGSKIAQHKMGRKQKDADDYPVQISLIVEETVQLRHGSLEASRLSANRHLIKELGEEGDYKMTLRKFPHQVLRENKQATGAGADRVSDGMRAAFGKIVGTAARVQAGEQLFTAYCNVEDAEHVKEAFRRAYNKITPSCRIKVER 170          
BLAST of CN188585 vs. ExPASy Swiss-Prot
Match: RL10_CALMQ (50S ribosomal protein L10e OS=Caldivirga maquilingensis (strain DSMZ 13496 / IC-167) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.009e-20
Identity = 61/147 (41.50%), Postives = 85/147 (57.82%), Query Frame = -3
Query:  310 GVPDPKIRIYDVGMKK-KGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRK 747
            G P  +I  +++G  K K  + F     L   E   +   ALEAAR    KY++K      F+L++  +P HV+R NKML+ AGADRLQ GMR AFG P G   ++  G+VL+ V  +D N  HA+EAL RA+ K P   +I ++RK
Sbjct:   24 GAPYVQIPRFEMGATKAKDRERFTSVAVLRVLEGGQIRVNALEAARQMAYKYLSKVLTDQNFYLKIIKYPHHVIRENKMLAMAGADRLQEGMRLAFGVPTGRAIQIEPGEVLMIVEVEDRNITHAKEALNRARAKLPLPCRIELTRK 170          
The following BLAST results are available for this feature:
BLAST of CN188585 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 92
Match NameE-valueIdentityDescription
RL10_METMA3.467e-2142.6650S ribosomal protein L10e OS=Methanosarcina mazei... [more]
RL10_PYRFU4.528e-2142.6550S ribosomal protein L10e OS=Pyrococcus furiosus ... [more]
RL10_PYRHO5.913e-2142.6550S ribosomal protein L10e OS=Pyrococcus horikoshi... [more]
RL10_METS55.913e-2141.3850S ribosomal protein L10e OS=Metallosphaera sedul... [more]
RL10_METBU7.723e-2139.3150S ribosomal protein L10e OS=Methanococcoides bur... [more]
RL10_METST1.009e-2037.7550S ribosomal protein L10e OS=Methanosphaera stadt... [more]
RL10_METPE1.009e-2039.3150S ribosomal protein L10e OS=Methanosphaerula pal... [more]
RL10_METLZ1.009e-2039.8650S ribosomal protein L10e OS=Methanocorpusculum l... [more]
RL10_HALMA1.009e-2037.6750S ribosomal protein L10e OS=Haloarcula marismort... [more]
RL10_CALMQ1.009e-2041.5050S ribosomal protein L10e OS=Caldivirga maquiling... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006F20_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006F20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188585 ID=CN188585; Name=CN188585; organism=Citrus sinensis; type=EST; length=749bp
GCGTTTTTTTAAGACAACTGCAAGGATCACATAGTTAAACCAAATAAACA
TGTCACTTCAACTTGAGAAATCCAGTTCAACTGAGAAAAGGTACGAAATG
GAAAATAATAAACTAGACAGTAGTCACAGCTCTGCTATTTTGAGACAGTA
AATATCTTAGGTTGTTGCTTCCAGGAAAGCTCTTCCAGGTTGGCGTTGAG
CCAAAGGACCATGACATCCGAGAAGCTTGGCATTCACACCATCTGGGACA
ATCCTGTTCTCCGACTTCCACCTCAGATAATCAGCACGGCTGAACTTGGT
AAATCCCCATTTCCTGCTGACAATAATCTTTTGACGACCAGGAAACTTGA
ACTTAGCACGGCGAAGGGCCTCCTGAGCATGGTGGCTGTTACTGTCCTTG
CAACGGACAGAAAGCAAGACCTGCCCGATAGCAACACGAGCACAGGTTCC
TTGGGGCTTTCCAAAAGCACCCCTCATTCCAGTCTGGAGCCGATCAGCCC
CAGCACACGAAAGCATCTTGTTAATGCGCAGAACATGGAAGGGGTGCACC
CTCACTCGCAAATGGAAAGCATCCTTGCCAGCGTACTTGGCCATGTACTT
GTTGCAAGCGATACGGGCAGCTTCCAAGGCCTCGCTCGACACGTTCTCCT
TCTCCCAACTGACGAGGTGAACGCAGAAGGGGAACTCGTCGACGCCTTTC
TTCTTCATCCCGACATCGTAGATTCTGATCTTGGGATCGGGGACACCGC
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