CN188585

Overview
NameCN188585
Unique NameCN188585
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length749
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig242 contig Csv1_Contig242:123..871. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN188585 vs. ExPASy Swiss-Prot
Match: RL10_THEON (50S ribosomal protein L10e OS=Thermococcus onnurineus (strain NA1) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.317e-20
Identity = 57/136 (41.91%), Postives = 76/136 (55.88%), Query Frame = -3
Query:  340 GVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFP 747
            G P PKI I+D+G       EF + V L + +   +   ALEA RI  N+Y+ K  G+  +H ++RV+PF VLR N M +   ADR   GMR  FGKP G  ARV   Q +L+V   + +   A EA+RRA  K P
Sbjct:   25 GAPGPKITIFDMGNLSA---EFQYEVSLHAEQAMQIRQNALEAIRIQVNRYLQKNVGRSNYHFKIRVYPFQVLRENPMATGRKADRYGNGMRRPFGKPIGLAARVKKDQKILTVWVNEGHLKFALEAMRRAAMKLP 157          
BLAST of CN188585 vs. ExPASy Swiss-Prot
Match: RL10_METAC (50S ribosomal protein L10e OS=Methanosarcina acetivorans GN=rpl10e PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.720e-20
Identity = 59/143 (41.26%), Postives = 83/143 (58.04%), Query Frame = -3
Query:  319 GVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIV 747
            GVP  ++  YD+G K      FP  + L+  EK  +   ALEAARI  N+++    GK  F++++RV+P  V+R NK  + AGADR+ +GMR AFGK  GT ARV   Q + +V  +  N   A+EAL  A  K P   +I+V
Sbjct:   25 GVPGSQVIHYDMGDKAN--TSFPVKISLIVEEKCQIRHTALEAARITANRHLVADTGKMGFYMKLRVYPHEVIRENKQATGAGADRVSSGMRRAFGKNVGTAARVKPMQKIFTVAVEKQNFKAAKEALWHAGQKLPTPCRIVV 165          
BLAST of CN188585 vs. ExPASy Swiss-Prot
Match: RL10_PYRAB (50S ribosomal protein L10e OS=Pyrococcus abyssi GN=rpl10e PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.833e-20
Identity = 57/136 (41.91%), Postives = 74/136 (54.41%), Query Frame = -3
Query:  340 GVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFP 747
            G P PKI I+D+G       +F F V L   +   +   ALEAAR   N+Y+ K  G+  +H ++RV+PF VLR N M +   ADR   GMR  FGKP G  AR+   Q +LS+R    +   A E  RRA  KFP
Sbjct:   25 GAPGPKITIFDMG---NPAGDFEFEVALHVSQPVQIRQNALEAARQQVNRYLQKNVGRSNYHFKIRVYPFQVLRENPMATGRKADRYGNGMRRPFGKPIGLAARLKKDQKVLSIRVNRQHLKFAIEGARRAAMKFP 157          
BLAST of CN188585 vs. ExPASy Swiss-Prot
Match: RL10_METMJ (50S ribosomal protein L10e OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.833e-20
Identity = 59/145 (40.69%), Postives = 81/145 (55.86%), Query Frame = -3
Query:  313 GVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSR 747
            GVP  KI  +D+G      +++P  + +V  E   +   ALEAARI  N+ + K  G+  FHL++R  P HVLR NK  + AGADR+  GMR AFGK  GT ARV  GQ + SV         A+ +L+R  +K P   +I+  R
Sbjct:   25 GVPGSKIVQFDMGNL---TEDYPVELSIVVDETCQIRHTALEAARIGINRQLQKEVGRANFHLKIRTFPHHVLRENKQATGAGADRVSEGMRLAFGKAVGTAARVEKGQKVFSVWTSPQYVDKAKVSLKRGIYKLPTPARIVEER 166          
BLAST of CN188585 vs. ExPASy Swiss-Prot
Match: RL10_THEGJ (50S ribosomal protein L10e OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 6.538e-20
Identity = 56/136 (41.18%), Postives = 75/136 (55.15%), Query Frame = -3
Query:  340 GVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFP 747
            G P PKI I+D+G       EF + V L + +   +   ALEA RI  N+Y+ K  G+  +H ++RV+PF VLR N M +   ADR   GMR  FGKP G  ARV   Q +L+V   + +   A  A+ RAK K P
Sbjct:   25 GAPGPKITIFDMGNLSA---EFEYEVSLHAEQAMQIRQNALEAIRIQVNRYLQKNVGRSNYHFKIRVYPFQVLRENPMATGRKADRYGNGMRRPFGKPIGLAARVKKDQKILTVWVNEQHLKFALGAMHRAKMKLP 157          
BLAST of CN188585 vs. ExPASy Swiss-Prot
Match: RL10_PYRKO (50S ribosomal protein L10e OS=Pyrococcus kodakaraensis GN=rpl10e PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.456e-19
Identity = 56/136 (41.18%), Postives = 74/136 (54.41%), Query Frame = -3
Query:  340 GVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFP 747
            G P PKI I+D+G       EF + V L + +   +   ALEA RI  N+Y+ K  G+  +H ++RV+PF VLR N M +   ADR   GMR  FGKP G  ARV   Q +L+V     +   A  A+ RAK K P
Sbjct:   25 GAPGPKITIFDMGNLSA---EFEYEVSLHAEQAMQIRQNALEAIRIQVNRYLQKNVGRSNYHFKIRVYPFQVLRENPMATGRKADRYGNGMRRPFGKPIGLAARVRKDQKILTVWVNGQHLKFALGAMHRAKMKLP 157          
BLAST of CN188585 vs. ExPASy Swiss-Prot
Match: RL10_METBF (50S ribosomal protein L10e OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.245e-19
Identity = 57/143 (39.86%), Postives = 84/143 (58.74%), Query Frame = -3
Query:  319 GVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIV 747
            GVP  ++  YD+G K      FP  + L+  EK  +   ALEAARI  N+++ +  GK  +++++RV+P  VLR NK  + AGADR+ +GMR AFGK  GT ARV   Q + +V  +  N   A++AL  A  K P   +I++
Sbjct:   25 GVPGSQVIHYDMGDKAN--TSFPIKLSLLVEEKCQIRHTALEAARITANRHLIEDTGKMGYYMKLRVYPHEVLRENKQATGAGADRVSSGMRRAFGKNVGTAARVNPFQKIFTVAVEKQNFVAAKKALWHAGQKLPTPCRIVI 165          
BLAST of CN188585 vs. ExPASy Swiss-Prot
Match: RL10_METHJ (50S ribosomal protein L10e OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 4.238e-19
Identity = 55/146 (37.67%), Postives = 80/146 (54.79%), Query Frame = -3
Query:  310 GVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRK 747
            G+P  K+  +D+G       EFP  V LV  E   +   ALEAAR++ N+ + K  G+  +HL++R +P HVLR NK  + AGADR+  GMR AFGK  GT AR    Q + +V    ++    ++ALR    K P    +++  K
Sbjct:   25 GIPGVKVVHFDMGNL---TSEFPMEVSLVVDESCQIRHSALEAARMSINRKLNKELGRMNYHLKLRTYPHHVLRENKQATGAGADRVSQGMRLAFGKAVGTAARCQQNQKIFTVFSNPASVEKIKDALRHGGHKLPSPTHLVIEMK 167          
BLAST of CN188585 vs. ExPASy Swiss-Prot
Match: RL10_HALSA (50S ribosomal protein L10e OS=Halobacterium salinarium GN=rpl10e PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 9.440e-19
Identity = 52/145 (35.86%), Postives = 81/145 (55.86%), Query Frame = -3
Query:  313 GVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSR 747
            G+P  KI  + +G  +   D++P  + LV  E+  +   +LEAAR++ N+++ K  G+  + +++R  P  ++R NK  + AGADR+  GMR AFG P GT AR+  G  L +  C+   +   +EA RRA  K     KI V R
Sbjct:   25 GIPGSKIAQHKMGDLQADADDYPVQISLVPQEECQLRHGSLEAARLSANRHLIKELGEGNYKMQLRKFPHQIIRENKQATGAGADRVSDGMRQAFGVPVGTAARIQPGDQLFTAYCEVEQAAAVKEAFRRAYNKITPPCKINVER 169          
BLAST of CN188585 vs. ExPASy Swiss-Prot
Match: RL10_HALS3 (50S ribosomal protein L10e OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 9.440e-19
Identity = 52/145 (35.86%), Postives = 81/145 (55.86%), Query Frame = -3
Query:  313 GVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSR 747
            G+P  KI  + +G  +   D++P  + LV  E+  +   +LEAAR++ N+++ K  G+  + +++R  P  ++R NK  + AGADR+  GMR AFG P GT AR+  G  L +  C+   +   +EA RRA  K     KI V R
Sbjct:   25 GIPGSKIAQHKMGDLQADADDYPVQISLVPQEECQLRHGSLEAARLSANRHLIKELGEGNYKMQLRKFPHQIIRENKQATGAGADRVSDGMRQAFGVPVGTAARIQPGDQLFTAYCEVEQAAAVKEAFRRAYNKITPPCKINVER 169          
The following BLAST results are available for this feature:
BLAST of CN188585 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 92
Match NameE-valueIdentityDescription
RL10_THEON1.317e-2041.9150S ribosomal protein L10e OS=Thermococcus onnurin... [more]
RL10_METAC1.720e-2041.2650S ribosomal protein L10e OS=Methanosarcina aceti... [more]
RL10_PYRAB3.833e-2041.9150S ribosomal protein L10e OS=Pyrococcus abyssi GN... [more]
RL10_METMJ3.833e-2040.6950S ribosomal protein L10e OS=Methanoculleus maris... [more]
RL10_THEGJ6.538e-2041.1850S ribosomal protein L10e OS=Thermococcus gammato... [more]
RL10_PYRKO1.456e-1941.1850S ribosomal protein L10e OS=Pyrococcus kodakarae... [more]
RL10_METBF3.245e-1939.8650S ribosomal protein L10e OS=Methanosarcina barke... [more]
RL10_METHJ4.238e-1937.6750S ribosomal protein L10e OS=Methanospirillum hun... [more]
RL10_HALSA9.440e-1935.8650S ribosomal protein L10e OS=Halobacterium salina... [more]
RL10_HALS39.440e-1935.8650S ribosomal protein L10e OS=Halobacterium salina... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006F20_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006F20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188585 ID=CN188585; Name=CN188585; organism=Citrus sinensis; type=EST; length=749bp
GCGTTTTTTTAAGACAACTGCAAGGATCACATAGTTAAACCAAATAAACA
TGTCACTTCAACTTGAGAAATCCAGTTCAACTGAGAAAAGGTACGAAATG
GAAAATAATAAACTAGACAGTAGTCACAGCTCTGCTATTTTGAGACAGTA
AATATCTTAGGTTGTTGCTTCCAGGAAAGCTCTTCCAGGTTGGCGTTGAG
CCAAAGGACCATGACATCCGAGAAGCTTGGCATTCACACCATCTGGGACA
ATCCTGTTCTCCGACTTCCACCTCAGATAATCAGCACGGCTGAACTTGGT
AAATCCCCATTTCCTGCTGACAATAATCTTTTGACGACCAGGAAACTTGA
ACTTAGCACGGCGAAGGGCCTCCTGAGCATGGTGGCTGTTACTGTCCTTG
CAACGGACAGAAAGCAAGACCTGCCCGATAGCAACACGAGCACAGGTTCC
TTGGGGCTTTCCAAAAGCACCCCTCATTCCAGTCTGGAGCCGATCAGCCC
CAGCACACGAAAGCATCTTGTTAATGCGCAGAACATGGAAGGGGTGCACC
CTCACTCGCAAATGGAAAGCATCCTTGCCAGCGTACTTGGCCATGTACTT
GTTGCAAGCGATACGGGCAGCTTCCAAGGCCTCGCTCGACACGTTCTCCT
TCTCCCAACTGACGAGGTGAACGCAGAAGGGGAACTCGTCGACGCCTTTC
TTCTTCATCCCGACATCGTAGATTCTGATCTTGGGATCGGGGACACCGC
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