CN181492

Overview
NameCN181492
Unique NameCN181492
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length604
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2605 contig Csv1_Contig2605:156..742. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN181492 vs. ExPASy Swiss-Prot
Match: THIO_OPHHA (Thioredoxin OS=Ophiophagus hannah GN=TXN PE=3 SV=3)

HSP 1 Score: 92.4337 bits (228), Expect = 1.854e-18
Identity = 39/90 (43.33%), Postives = 63/90 (70.00%), Query Frame = -1
Query:  227 SNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGSKKEELQQTIAKHL 496
            SN   +L+VVDF+A+WCGPC+ I PF   + +K P+V+F+++DVD+ + VA+   V+ MPTF F K  + V +  G+ KE+L++ I K++
Sbjct:   16 SNAGSKLIVVDFSATWCGPCKMIKPFFHSMVEKYPDVVFIEIDVDDAQDVASHCDVKCMPTFQFYKNNEKVHEFSGANKEKLEEAIKKYM 105          
BLAST of CN181492 vs. ExPASy Swiss-Prot
Match: THIO_CHICK (Thioredoxin OS=Gallus gallus GN=TXN PE=3 SV=2)

HSP 1 Score: 92.0485 bits (227), Expect = 2.422e-18
Identity = 41/82 (50.00%), Postives = 59/82 (71.95%), Query Frame = -1
Query:  239 KQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGSKKEELQQTI 484
            ++LVVVDF+A+WCGPC+ I PF   L  K  +V+F+++DVD+ + VAT   V+ MPTF F K GK V +  G+ KE+L++TI
Sbjct:   20 EKLVVVDFSATWCGPCKMIKPFFHSLCDKFGDVVFIEIDVDDAQDVATHCDVKCMPTFQFYKNGKKVQEFSGANKEKLEETI 101          
BLAST of CN181492 vs. ExPASy Swiss-Prot
Match: THIO_PONAB (Thioredoxin OS=Pongo abelii GN=TXN PE=3 SV=3)

HSP 1 Score: 90.1225 bits (222), Expect = 9.203e-18
Identity = 45/95 (47.37%), Postives = 67/95 (70.53%), Query Frame = -1
Query:  239 AWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTF-MFLKEGKIVDKVVGSKKEELQQTI 520
            A+ E L  + +  +LVVVDF+A+WCGPC+ I PF   L++K  NV+FL+VDVD+ + VA++  V+ MPTF  F K+G+ V +  G+ KE+L+ TI
Sbjct:   10 AFQEALDAAGD--KLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDDCQDVASECEVKCMPTFQFFFKKGQKVGEFSGANKEKLEATI 102          
BLAST of CN181492 vs. ExPASy Swiss-Prot
Match: THIO_GEOCY (Thioredoxin OS=Geodia cydonium GN=THIO PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 3.497e-17
Identity = 44/85 (51.76%), Postives = 59/85 (69.41%), Query Frame = -1
Query:  230 QLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGK-IVDKVVGSKKEELQQTIAKH 481
            +LVV+DFTASWCGPC+ IAP   E+AK+ P+V+F KVDVDE    A    ++AMPTF F K GK + D V G+ +  L++ I K+
Sbjct:   21 KLVVIDFTASWCGPCQRIAPKYVEMAKEFPDVIFYKVDVDENDETAEAEKIQAMPTFKFYKSGKALSDYVQGANEAGLREKIKKN 105          
BLAST of CN181492 vs. ExPASy Swiss-Prot
Match: NGLY1_CAEBR (Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase OS=Caenorhabditis briggsae GN=png-1 PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 4.567e-17
Identity = 41/101 (40.59%), Postives = 64/101 (63.37%), Query Frame = -1
Query:  212 NEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGSKKEELQQTIAKHLATASA 514
            NE L+KS ++ +L++VDF A+WCGPCR I+P    L+ +  N  FLKV+ D  + +   +++ AMPTF+F K  + VD V G+ +  +  TI KH ++  A
Sbjct:   13 NEILEKS-DSNRLIIVDFFANWCGPCRMISPAFERLSMEFGNATFLKVNTDLARDIVMRYSISAMPTFLFFKNKQQVDSVRGANESAIISTIRKHYSSTPA 112          
BLAST of CN181492 vs. ExPASy Swiss-Prot
Match: TRXL4_ARATH (Thioredoxin-like 4 OS=Arabidopsis thaliana GN=At1g11530 PE=2 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 7.791e-17
Identity = 42/103 (40.78%), Postives = 64/103 (62.14%), Query Frame = -1
Query:  239 QVIGCHPVEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGSKKEELQQTI 547
            +V+     E+WN  + ++      +V  FTA WC P  F+  F  ELA    + LFL VDVDE+K VA+   V+AMPTF+FLK+G  +DK+VG+  +E+++ +
Sbjct:    3 RVVKIDSAESWNFYVSQAKNQNCPIVAHFTALWCIPSVFMNSFFEELAFNYKDALFLIVDVDEVKEVASQLEVKAMPTFLFLKDGNAMDKLVGANPDEIKKRV 105          
BLAST of CN181492 vs. ExPASy Swiss-Prot
Match: THIO1_CAEEL (Thioredoxin-1 OS=Caenorhabditis elegans GN=trx-1 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.267e-16
Identity = 38/96 (39.58%), Postives = 64/96 (66.67%), Query Frame = -1
Query:  224 EQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGSKKEELQQTIAKHLA 511
            EQL + +  K ++++DF A+WCGPC+ IAP   ELA     ++F KVDVDE + + + + V+ MPTF+F K G  ++ + G  ++EL+Q + +H++
Sbjct:   19 EQLIRQHPEK-IIILDFYATWCGPCKAIAPLYKELATTHKGIIFCKVDVDEAEDLCSKYDVKMMPTFIFTKNGDAIEALEGCVEDELRQKVLEHVS 113          
BLAST of CN181492 vs. ExPASy Swiss-Prot
Match: TRX1_YEAST (Thioredoxin-1 OS=Saccharomyces cerevisiae GN=TRX1 PE=1 SV=3)

HSP 1 Score: 84.7297 bits (208), Expect = 3.866e-16
Identity = 41/82 (50.00%), Postives = 54/82 (65.85%), Query Frame = -1
Query:  236 QLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGSKKEELQQTIA 481
            +LVVVDF A+WCGPC+ IAP + + +++ P   F K+DVDEL  VA    V AMPT +  K GK V KVVG+    ++Q IA
Sbjct:   19 KLVVVDFYATWCGPCKMIAPMIEKFSEQYPQADFYKLDVDELGDVAQKNEVSAMPTLLLFKNGKEVAKVVGANPAAIKQAIA 100          
BLAST of CN181492 vs. ExPASy Swiss-Prot
Match: TRX2_YEAST (Thioredoxin-2 OS=Saccharomyces cerevisiae GN=TRX2 PE=1 SV=3)

HSP 1 Score: 83.9593 bits (206), Expect = 6.595e-16
Identity = 39/85 (45.88%), Postives = 57/85 (67.06%), Query Frame = -1
Query:  227 QLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGSKKEELQQTIAKHL 481
            +LVVVDF A+WCGPC+ IAP + + A++  +  F K+DVDE+  VA    V +MPT +F K GK V +VVG+    ++Q IA ++
Sbjct:   20 KLVVVDFFATWCGPCKMIAPMIEKFAEQYSDAAFYKLDVDEVSDVAQKAEVSSMPTLIFYKGGKEVTRVVGANPAAIKQAIASNV 104          
BLAST of CN181492 vs. ExPASy Swiss-Prot
Match: THIO_PLAF7 (Thioredoxin OS=Plasmodium falciparum (isolate 3D7) GN=PF14_0545 PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 6.595e-16
Identity = 39/86 (45.35%), Postives = 54/86 (62.79%), Query Frame = -1
Query:  224 QLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGSKKEELQQTIAKHLA 481
            +LV+VDF A WCGPC+ IAPF  E +K    ++F+KVDVDE+  V     + +MPTF   K G  VD ++G+    L+Q I K+ A
Sbjct:   19 ELVIVDFFAEWCGPCKRIAPFYEECSKTYTKMVFIKVDVDEVSEVTEKENITSMPTFKVYKNGSSVDTLLGANDSALKQLIEKYAA 104          
The following BLAST results are available for this feature:
BLAST of CN181492 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 110
Match NameE-valueIdentityDescription
THIO_OPHHA1.854e-1843.33Thioredoxin OS=Ophiophagus hannah GN=TXN PE=3 SV=3[more]
THIO_CHICK2.422e-1850.00Thioredoxin OS=Gallus gallus GN=TXN PE=3 SV=2[more]
THIO_PONAB9.203e-1847.37Thioredoxin OS=Pongo abelii GN=TXN PE=3 SV=3[more]
THIO_GEOCY3.497e-1751.76Thioredoxin OS=Geodia cydonium GN=THIO PE=3 SV=1[more]
NGLY1_CAEBR4.567e-1740.59Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagin... [more]
TRXL4_ARATH7.791e-1740.78Thioredoxin-like 4 OS=Arabidopsis thaliana GN=At1g... [more]
THIO1_CAEEL2.267e-1639.58Thioredoxin-1 OS=Caenorhabditis elegans GN=trx-1 P... [more]
TRX1_YEAST3.866e-1650.00Thioredoxin-1 OS=Saccharomyces cerevisiae GN=TRX1 ... [more]
TRX2_YEAST6.595e-1645.88Thioredoxin-2 OS=Saccharomyces cerevisiae GN=TRX2 ... [more]
THIO_PLAF76.595e-1645.35Thioredoxin OS=Plasmodium falciparum (isolate 3D7)... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001A12_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001A12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181492 ID=CN181492; Name=CN181492; organism=Citrus sinensis; type=EST; length=604bp
AACAACAAAGAACGATCTACCCCAAATATGAAATTAAATTATTGTAAAGA
CCACAGTATGAGCTTCATAGAACAGTAAATTACGGAATATTCAAACACAC
AAACAAACACAATCCCATAACCACTCTAATAAGTAAATTACAGACTGATA
GCATATATTGAGGTCTATAGCCTCTAAAGCCAAAAGGCAGGAGGATAGTT
ATAACTTATTAGGCAGAGGCAGTTGCCAGATGCTTGGCAATAGTCTGCTG
CAGTTCCTCTTTCTTTGATCCAACCACCTTGTCCACAATCTTCCCCTCTT
TCAGGAACATGAAAGTTGGCATGGCCTCCACTGCCCAGTCAGTGGCAACA
CTCTTCAGTTCATCCACATCAACCTTCAGAAACAGGACATTAGGCAGTTT
CTTGGCCAGCTCTGCCAAGAAAGGAGCAATGAAACGGCATGGTCCGCACC
ACGAAGCAGTGAAATCAACAACAACCAGCTGTTTGGTTTCATTGCTCTTC
TGGAGCTGCTCGTTCCAGGCCTCAACGGGGTGGCACCCGATGACTTGTCC
CTCTTCTGCTGCTGCCATTTCTGCTTTCCGCGGTTATTACCACCACTACT
CCAC
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