CX077104
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX077104 vs. ExPASy Swiss-Prot
Match: YCF1_CAPBU (Putative membrane protein ycf1 OS=Capsella bursa-pastoris GN=ycf1-A PE=3 SV=1) HSP 1 Score: 159.844 bits (403), Expect = 4.719e-39 Identity = 82/150 (54.67%), Postives = 102/150 (68.00%), Query Frame = -2 Query: 2 SIQRGEMSLPILITKKKFALKELTKGGMLIIEPRRLSVKNDGQFFLYQIVGIALVHKNKRKITKRYQEKGYVDKKDFDEFIAKHQKMTGNRNKNHYDLLVPETILLPKRRRELRTLICFNSKNQNGMQKNPVFFNNGKGGGRVLDKNKNL 451 SI+RGEMSL IL+ +K F +L K G+LIIEP RLSV+NDGQ +Y+ +GI LVHKNK KI+KR ++K Y+DKK F++ K+Q T NR K HYD VPE IL PKRRRE R LICFN K + +N F N + VL K K+L Sbjct: 1587 SIERGEMSLDILMIEKNFTFAKLMKKGILIIEPVRLSVQNDGQLIIYRTIGIPLVHKNKHKISKRSKKKSYIDKKIFEKSKTKYQNKTVNRKKKHYDFFVPENILSPKRRREFRILICFNLKKKTARDRNSRFDKNIQNLTTVLHKKKDL 1736
BLAST of CX077104 vs. ExPASy Swiss-Prot
Match: YCF1_POPTR (Putative membrane protein ycf1 OS=Populus trichocarpa GN=ycf1-A PE=3 SV=1) HSP 1 Score: 158.688 bits (400), Expect = 1.051e-38 Identity = 80/149 (53.69%), Postives = 106/149 (71.14%), Query Frame = -2 Query: 5 SIQRGEMSLPILITKKKFALKELTKGGMLIIEPRRLSVKNDGQFFLYQIVGIALVHKNKRKITKRYQEKGYVDKKDFDEFIAKHQKMTGNRNKNHYDLLVPETILLPKRRRELRTLICFNSKNQNGMQKNPVFFNNGKGGGRVLDKNKN 451 SIQRGE+SL IL+ +K L EL K G+LIIE RLSVKNDG+F +YQ + I LVHK K++I +RY++K Y+DKK+F+E I +Q +T N++KN+YDL VPE +L K RRELR LI FNSKN N + + NN K ++DK K+ Sbjct: 1620 SIQRGELSLDILMIQKDLTLTELMKKGILIIESTRLSVKNDGKFIMYQTINILLVHKRKQQINQRYRKKNYIDKKNFNESIVINQSLTRNKDKNNYDLPVPENLLSSKHRRELRILISFNSKNGNDINTEIINNNNIKNHAHIIDKRKH 1768
BLAST of CX077104 vs. ExPASy Swiss-Prot
Match: YCF1_ATRBE (Putative membrane protein ycf1 OS=Atropa belladonna GN=ycf1-A PE=3 SV=1) HSP 1 Score: 157.532 bits (397), Expect = 2.342e-38 Identity = 83/152 (54.61%), Postives = 107/152 (70.39%), Query Frame = -2 Query: 2 SIQRGEMSLPILITKKKFALKELTKGGMLIIEPRRLSVKNDGQFFLYQIVGIALVHKNKRKITKRYQEKGYVDKKDFDEFIAKHQKMTGNRNKNHYDLLVPETILLPKRRRELRTLICFNSKNQNGMQKNPVFFN--NGKGGGRVLDKNKNL 451 S+QRGEMSL I++ + L EL K G+LIIEP RLSVKN+GQF +YQ +GI+LVHK+K + +RY+++ YVDKK+FDE I + Q N +KNH+DLLVPE IL +RRRELR FNS N NG+ +N VF N N K + LD+ K L Sbjct: 1676 SVQRGEMSLDIMLIQGNLTLTELMKKGILIIEPIRLSVKNNGQFIMYQTIGISLVHKSKHQTNQRYRDQRYVDKKNFDESILQPQTQRINTDKNHFDLLVPENILWSRRRRELRIRSFFNSLNWNGVDRNSVFCNETNVKNWSQFLDERKPL 1827
BLAST of CX077104 vs. ExPASy Swiss-Prot
Match: YCF1_LEPVR (Putative membrane protein ycf1 OS=Lepidium virginicum GN=ycf1-A PE=3 SV=1) HSP 1 Score: 152.525 bits (384), Expect = 7.535e-37 Identity = 82/150 (54.67%), Postives = 101/150 (67.33%), Query Frame = -2 Query: 2 SIQRGEMSLPILITKKKFALKELTKGGMLIIEPRRLSVKNDGQFFLYQIVGIALVHKNKRKITKRYQEKGYVDKKDFDEFIAKHQKMTGNRNKNHYDLLVPETILLPKRRRELRTLICFNSKNQNGMQKNPVFFNNGKGGGRVLDKNKNL 451 SI+RGEMSL IL+ +K F L +L K G+LIIEP RLSV+N+GQ +Y+ +GI+LV KNK KI+KRY KK ++ I K+QK T NR KNHYD VPE IL PKRRRE R LICFN K +N +N F N + VL K K+L Sbjct: 1539 SIERGEMSLDILMIEKNFTLAKLMKKGILIIEPVRLSVQNNGQLIIYRTIGISLVQKNKHKISKRY-------KKKIEKSITKYQKKTVNRKKNHYDFFVPENILSPKRRREFRILICFNLKKKNASDRNSRFDKNIQNLTTVLHKKKDL 1681
BLAST of CX077104 vs. ExPASy Swiss-Prot
Match: YCF1_ILLOL (Putative membrane protein ycf1 OS=Illicium oligandrum GN=ycf1 PE=3 SV=1) HSP 1 Score: 152.525 bits (384), Expect = 7.535e-37 Identity = 83/153 (54.25%), Postives = 109/153 (71.24%), Query Frame = -2 Query: 2 SIQRGEMSLPILITKKKFALKELTKGGMLIIEPRRLSVKNDGQFFLYQIVGIALVHKNKRKITKRYQEKGYVDKKDFDEFIAKHQKMTGNRNKNHYDLLVPETILLPKRRRELRTLICFNSKNQNGMQKNPVFFNNGKGG---GRVLDKNKNL 451 SIQRGEM L + +K A+ EL K G+LI+EP RLS+K DGQF +YQ +GI+LVHK+K K +R +EK YVD+ FD I +H KM NR+K +YDLLVPE IL +RRRELR LI FNS+N+N + +NPVF NG G + +D++K+L Sbjct: 1678 SIQRGEMCLAAMKIQKDLAVTELIKKGILILEPVRLSIKWDGQFIMYQTIGISLVHKSKHKTNRRCREKRYVDENYFDISIEQHGKMLVNRDKKNYDLLVPENILSLRRRRELRILIRFNSENRNIVNRNPVFL-NGNGSHNCEQFVDRDKHL 1829
BLAST of CX077104 vs. ExPASy Swiss-Prot
Match: YCF1_LIRTU (Putative membrane protein ycf1 OS=Liriodendron tulipifera GN=ycf1 PE=3 SV=1) HSP 1 Score: 150.599 bits (379), Expect = 2.863e-36 Identity = 79/151 (52.32%), Postives = 107/151 (70.86%), Query Frame = -2 Query: 5 SIQRGEMSLPILITKKKFALKELTKGGMLIIEPRRLSVKNDGQFFLYQIVGIALVHKNKRKITKRYQEKGYVDKKDFDEFIAKHQKMTGNRNKNHYDLLVPETILLPKRRRELRTLICFNSKNQNGMQKNPVFF--NNGKGGGRVLDKNKN 451 SIQRGEM L +++ +K L EL K G+LIIEP RLS+K DGQ+ +YQ +GI+LVHKNK + + +EK YVD+ FD IA+H K+ N ++N+Y LLVPE I P+RRRELR LIC NS+N N + +N VFF NN + + LD++K+ Sbjct: 1631 SIQRGEMRLDVMLIQKDLTLTELIKRGILIIEPVRLSIKWDGQWIMYQTIGISLVHKNKYQTNRICREKKYVDENSFDRSIAQHGKVLVNGDENNYALLVPENIPSPRRRRELRILICLNSENGNVVDRNSVFFNGNNVRNCVQFLDEDKH 1781
BLAST of CX077104 vs. ExPASy Swiss-Prot
Match: YCF1_DAUCA (Putative membrane protein ycf1 OS=Daucus carota GN=ycf1 PE=3 SV=1) HSP 1 Score: 150.214 bits (378), Expect = 3.739e-36 Identity = 77/152 (50.66%), Postives = 105/152 (69.08%), Query Frame = -2 Query: 2 SIQRGEMSLPILITKKKFALKELTKGGMLIIEPRRLSVKNDGQFFLYQIVGIALVHKNKRKITKRYQEKGYVDKKDFDEFIAKHQKMTGNRNKNHYDLLVPETILLPKRRRELRTLICFNSKNQNGMQKNPVFFN--NGKGGGRVLDKNKNL 451 SIQR E++L I++ ++K EL K G+ ++P RLSVKNDG F +YQ VGI+LVHK+K + +RY+E+ Y++KK DE I ++Q + R+K HYD +VPE IL +RRRELR L+ FNSKN N + KNPVF N N K LD+ K+L Sbjct: 1624 SIQRKELNLDIMVIRQKLTPIELNKKGIFFLDPTRLSVKNDGYFIIYQTVGISLVHKSKYQTPQRYREQRYINKKKLDESIPRYQIILRKRDKKHYDFVVPENILSSRRRRELRILLSFNSKNLNSVDKNPVFCNKKNIKRRNPFLDQKKHL 1775
BLAST of CX077104 vs. ExPASy Swiss-Prot
Match: YCF1_SOLTU (Putative membrane protein ycf1 OS=Solanum tuberosum GN=ycf1-A PE=3 SV=1) HSP 1 Score: 147.132 bits (370), Expect = 3.166e-35 Identity = 80/152 (52.63%), Postives = 103/152 (67.76%), Query Frame = -2 Query: 2 SIQRGEMSLPILITKKKFALKELTKGGMLIIEPRRLSVKNDGQFFLYQIVGIALVHKNKRKITKRYQEKGYVDKKDFDEFIAKHQKMTGNRNKNHYDLLVPETILLPKRRRELRTLICFNSKNQNGMQKNPVFFN--NGKGGGRVLDKNKNL 451 SIQR EMSL I++ + L +L K G+LIIEP RLSVK++GQF +YQ +GI+LVHK+K + +RY+E+ YVDKK+FDEFI + Q N K H+DLLVPE IL +RRRELR FNS N N + +N VF N N K + L + K L Sbjct: 1683 SIQRREMSLDIMLIQANLPLTDLMKKGVLIIEPIRLSVKHNGQFIMYQTIGISLVHKSKHQTNQRYREQRYVDKKNFDEFILQPQTQRINTEKTHFDLLVPENILWSRRRRELRIRSFFNSLNWNVVDRNSVFCNETNVKNWSQFLGERKPL 1834
BLAST of CX077104 vs. ExPASy Swiss-Prot
Match: YCF1_SOLBU (Putative membrane protein ycf1 OS=Solanum bulbocastanum GN=ycf1 PE=3 SV=1) HSP 1 Score: 147.132 bits (370), Expect = 3.166e-35 Identity = 80/152 (52.63%), Postives = 103/152 (67.76%), Query Frame = -2 Query: 2 SIQRGEMSLPILITKKKFALKELTKGGMLIIEPRRLSVKNDGQFFLYQIVGIALVHKNKRKITKRYQEKGYVDKKDFDEFIAKHQKMTGNRNKNHYDLLVPETILLPKRRRELRTLICFNSKNQNGMQKNPVFFN--NGKGGGRVLDKNKNL 451 SIQR EMSL I++ + L +L K G+LIIEP RLSVK++GQF +YQ +GI+LVHK+K + +RY+E+ YVDKK+FDEFI + Q N K H+DLLVPE IL +RRRELR FNS N N + +N VF N N K + L + K L Sbjct: 1683 SIQRREMSLDIMLIQANLPLTDLMKKGVLIIEPIRLSVKHNGQFIMYQTIGISLVHKSKHQTNQRYREQRYVDKKNFDEFILQPQTQRINTEKTHFDLLVPENILWSRRRRELRIRSFFNSLNWNVVDRNSVFCNETNVKNWSQFLGERKPL 1834
BLAST of CX077104 vs. ExPASy Swiss-Prot
Match: YCF1_CHLSC (Putative membrane protein ycf1 OS=Chloranthus spicatus GN=ycf1-A PE=3 SV=1) HSP 1 Score: 147.132 bits (370), Expect = 3.166e-35 Identity = 75/151 (49.67%), Postives = 104/151 (68.87%), Query Frame = -2 Query: 5 SIQRGEMSLPILITKKKFALKELTKGGMLIIEPRRLSVKNDGQFFLYQIVGIALVHKNKRKITKRYQEKGYVDKKDFDEFIAKHQKMTGNRNKNHYDLLVPETILLPKRRRELRTLICFNSKNQNGMQKNPVFF--NNGKGGGRVLDKNKN 451 SIQ+GEM L ++ +K A EL K G+ IIEP RLS+K DG F++YQ VGI+LVHK+K +I +RY+EK YVD+ F+ A+H K+ N ++NHYDLL PE I +RR+E+R LI FNS N N + +NPVF NN + + D++K+ Sbjct: 1675 SIQKGEMFLDVMAIQKDLAFTELRKKGIFIIEPLRLSIKWDGPFYMYQTVGISLVHKSKHQINRRYREKRYVDQNHFNRSTAQHGKILVNGDENHYDLLFPEKIPSTRRRKEMRILISFNSGNGNVVNRNPVFLNGNNVRNCSQFFDEDKH 1825 The following BLAST results are available for this feature:
BLAST of CX077104 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 61
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Sequences
The
following sequences are available for this feature:
EST sequence >CX077104 ID=CX077104; Name=CX077104; organism=Citrus sinensis; type=EST; length=452bpback to top |