CX077104

Overview
NameCX077104
Unique NameCX077104
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length452
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX077104 vs. ExPASy Swiss-Prot
Match: YCF1_CAPBU (Putative membrane protein ycf1 OS=Capsella bursa-pastoris GN=ycf1-A PE=3 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 4.719e-39
Identity = 82/150 (54.67%), Postives = 102/150 (68.00%), Query Frame = -2
Query:    2 SIQRGEMSLPILITKKKFALKELTKGGMLIIEPRRLSVKNDGQFFLYQIVGIALVHKNKRKITKRYQEKGYVDKKDFDEFIAKHQKMTGNRNKNHYDLLVPETILLPKRRRELRTLICFNSKNQNGMQKNPVFFNNGKGGGRVLDKNKNL 451
            SI+RGEMSL IL+ +K F   +L K G+LIIEP RLSV+NDGQ  +Y+ +GI LVHKNK KI+KR ++K Y+DKK F++   K+Q  T NR K HYD  VPE IL PKRRRE R LICFN K +    +N  F  N +    VL K K+L
Sbjct: 1587 SIERGEMSLDILMIEKNFTFAKLMKKGILIIEPVRLSVQNDGQLIIYRTIGIPLVHKNKHKISKRSKKKSYIDKKIFEKSKTKYQNKTVNRKKKHYDFFVPENILSPKRRREFRILICFNLKKKTARDRNSRFDKNIQNLTTVLHKKKDL 1736          
BLAST of CX077104 vs. ExPASy Swiss-Prot
Match: YCF1_POPTR (Putative membrane protein ycf1 OS=Populus trichocarpa GN=ycf1-A PE=3 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 1.051e-38
Identity = 80/149 (53.69%), Postives = 106/149 (71.14%), Query Frame = -2
Query:    5 SIQRGEMSLPILITKKKFALKELTKGGMLIIEPRRLSVKNDGQFFLYQIVGIALVHKNKRKITKRYQEKGYVDKKDFDEFIAKHQKMTGNRNKNHYDLLVPETILLPKRRRELRTLICFNSKNQNGMQKNPVFFNNGKGGGRVLDKNKN 451
            SIQRGE+SL IL+ +K   L EL K G+LIIE  RLSVKNDG+F +YQ + I LVHK K++I +RY++K Y+DKK+F+E I  +Q +T N++KN+YDL VPE +L  K RRELR LI FNSKN N +    +  NN K    ++DK K+
Sbjct: 1620 SIQRGELSLDILMIQKDLTLTELMKKGILIIESTRLSVKNDGKFIMYQTINILLVHKRKQQINQRYRKKNYIDKKNFNESIVINQSLTRNKDKNNYDLPVPENLLSSKHRRELRILISFNSKNGNDINTEIINNNNIKNHAHIIDKRKH 1768          
BLAST of CX077104 vs. ExPASy Swiss-Prot
Match: YCF1_ATRBE (Putative membrane protein ycf1 OS=Atropa belladonna GN=ycf1-A PE=3 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 2.342e-38
Identity = 83/152 (54.61%), Postives = 107/152 (70.39%), Query Frame = -2
Query:    2 SIQRGEMSLPILITKKKFALKELTKGGMLIIEPRRLSVKNDGQFFLYQIVGIALVHKNKRKITKRYQEKGYVDKKDFDEFIAKHQKMTGNRNKNHYDLLVPETILLPKRRRELRTLICFNSKNQNGMQKNPVFFN--NGKGGGRVLDKNKNL 451
            S+QRGEMSL I++ +    L EL K G+LIIEP RLSVKN+GQF +YQ +GI+LVHK+K +  +RY+++ YVDKK+FDE I + Q    N +KNH+DLLVPE IL  +RRRELR    FNS N NG+ +N VF N  N K   + LD+ K L
Sbjct: 1676 SVQRGEMSLDIMLIQGNLTLTELMKKGILIIEPIRLSVKNNGQFIMYQTIGISLVHKSKHQTNQRYRDQRYVDKKNFDESILQPQTQRINTDKNHFDLLVPENILWSRRRRELRIRSFFNSLNWNGVDRNSVFCNETNVKNWSQFLDERKPL 1827          
BLAST of CX077104 vs. ExPASy Swiss-Prot
Match: YCF1_LEPVR (Putative membrane protein ycf1 OS=Lepidium virginicum GN=ycf1-A PE=3 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 7.535e-37
Identity = 82/150 (54.67%), Postives = 101/150 (67.33%), Query Frame = -2
Query:    2 SIQRGEMSLPILITKKKFALKELTKGGMLIIEPRRLSVKNDGQFFLYQIVGIALVHKNKRKITKRYQEKGYVDKKDFDEFIAKHQKMTGNRNKNHYDLLVPETILLPKRRRELRTLICFNSKNQNGMQKNPVFFNNGKGGGRVLDKNKNL 451
            SI+RGEMSL IL+ +K F L +L K G+LIIEP RLSV+N+GQ  +Y+ +GI+LV KNK KI+KRY       KK  ++ I K+QK T NR KNHYD  VPE IL PKRRRE R LICFN K +N   +N  F  N +    VL K K+L
Sbjct: 1539 SIERGEMSLDILMIEKNFTLAKLMKKGILIIEPVRLSVQNNGQLIIYRTIGISLVQKNKHKISKRY-------KKKIEKSITKYQKKTVNRKKNHYDFFVPENILSPKRRREFRILICFNLKKKNASDRNSRFDKNIQNLTTVLHKKKDL 1681          
BLAST of CX077104 vs. ExPASy Swiss-Prot
Match: YCF1_ILLOL (Putative membrane protein ycf1 OS=Illicium oligandrum GN=ycf1 PE=3 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 7.535e-37
Identity = 83/153 (54.25%), Postives = 109/153 (71.24%), Query Frame = -2
Query:    2 SIQRGEMSLPILITKKKFALKELTKGGMLIIEPRRLSVKNDGQFFLYQIVGIALVHKNKRKITKRYQEKGYVDKKDFDEFIAKHQKMTGNRNKNHYDLLVPETILLPKRRRELRTLICFNSKNQNGMQKNPVFFNNGKGG---GRVLDKNKNL 451
            SIQRGEM L  +  +K  A+ EL K G+LI+EP RLS+K DGQF +YQ +GI+LVHK+K K  +R +EK YVD+  FD  I +H KM  NR+K +YDLLVPE IL  +RRRELR LI FNS+N+N + +NPVF  NG G     + +D++K+L
Sbjct: 1678 SIQRGEMCLAAMKIQKDLAVTELIKKGILILEPVRLSIKWDGQFIMYQTIGISLVHKSKHKTNRRCREKRYVDENYFDISIEQHGKMLVNRDKKNYDLLVPENILSLRRRRELRILIRFNSENRNIVNRNPVFL-NGNGSHNCEQFVDRDKHL 1829          
BLAST of CX077104 vs. ExPASy Swiss-Prot
Match: YCF1_LIRTU (Putative membrane protein ycf1 OS=Liriodendron tulipifera GN=ycf1 PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 2.863e-36
Identity = 79/151 (52.32%), Postives = 107/151 (70.86%), Query Frame = -2
Query:    5 SIQRGEMSLPILITKKKFALKELTKGGMLIIEPRRLSVKNDGQFFLYQIVGIALVHKNKRKITKRYQEKGYVDKKDFDEFIAKHQKMTGNRNKNHYDLLVPETILLPKRRRELRTLICFNSKNQNGMQKNPVFF--NNGKGGGRVLDKNKN 451
            SIQRGEM L +++ +K   L EL K G+LIIEP RLS+K DGQ+ +YQ +GI+LVHKNK +  +  +EK YVD+  FD  IA+H K+  N ++N+Y LLVPE I  P+RRRELR LIC NS+N N + +N VFF  NN +   + LD++K+
Sbjct: 1631 SIQRGEMRLDVMLIQKDLTLTELIKRGILIIEPVRLSIKWDGQWIMYQTIGISLVHKNKYQTNRICREKKYVDENSFDRSIAQHGKVLVNGDENNYALLVPENIPSPRRRRELRILICLNSENGNVVDRNSVFFNGNNVRNCVQFLDEDKH 1781          
BLAST of CX077104 vs. ExPASy Swiss-Prot
Match: YCF1_DAUCA (Putative membrane protein ycf1 OS=Daucus carota GN=ycf1 PE=3 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 3.739e-36
Identity = 77/152 (50.66%), Postives = 105/152 (69.08%), Query Frame = -2
Query:    2 SIQRGEMSLPILITKKKFALKELTKGGMLIIEPRRLSVKNDGQFFLYQIVGIALVHKNKRKITKRYQEKGYVDKKDFDEFIAKHQKMTGNRNKNHYDLLVPETILLPKRRRELRTLICFNSKNQNGMQKNPVFFN--NGKGGGRVLDKNKNL 451
            SIQR E++L I++ ++K    EL K G+  ++P RLSVKNDG F +YQ VGI+LVHK+K +  +RY+E+ Y++KK  DE I ++Q +   R+K HYD +VPE IL  +RRRELR L+ FNSKN N + KNPVF N  N K     LD+ K+L
Sbjct: 1624 SIQRKELNLDIMVIRQKLTPIELNKKGIFFLDPTRLSVKNDGYFIIYQTVGISLVHKSKYQTPQRYREQRYINKKKLDESIPRYQIILRKRDKKHYDFVVPENILSSRRRRELRILLSFNSKNLNSVDKNPVFCNKKNIKRRNPFLDQKKHL 1775          
BLAST of CX077104 vs. ExPASy Swiss-Prot
Match: YCF1_SOLTU (Putative membrane protein ycf1 OS=Solanum tuberosum GN=ycf1-A PE=3 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 3.166e-35
Identity = 80/152 (52.63%), Postives = 103/152 (67.76%), Query Frame = -2
Query:    2 SIQRGEMSLPILITKKKFALKELTKGGMLIIEPRRLSVKNDGQFFLYQIVGIALVHKNKRKITKRYQEKGYVDKKDFDEFIAKHQKMTGNRNKNHYDLLVPETILLPKRRRELRTLICFNSKNQNGMQKNPVFFN--NGKGGGRVLDKNKNL 451
            SIQR EMSL I++ +    L +L K G+LIIEP RLSVK++GQF +YQ +GI+LVHK+K +  +RY+E+ YVDKK+FDEFI + Q    N  K H+DLLVPE IL  +RRRELR    FNS N N + +N VF N  N K   + L + K L
Sbjct: 1683 SIQRREMSLDIMLIQANLPLTDLMKKGVLIIEPIRLSVKHNGQFIMYQTIGISLVHKSKHQTNQRYREQRYVDKKNFDEFILQPQTQRINTEKTHFDLLVPENILWSRRRRELRIRSFFNSLNWNVVDRNSVFCNETNVKNWSQFLGERKPL 1834          
BLAST of CX077104 vs. ExPASy Swiss-Prot
Match: YCF1_SOLBU (Putative membrane protein ycf1 OS=Solanum bulbocastanum GN=ycf1 PE=3 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 3.166e-35
Identity = 80/152 (52.63%), Postives = 103/152 (67.76%), Query Frame = -2
Query:    2 SIQRGEMSLPILITKKKFALKELTKGGMLIIEPRRLSVKNDGQFFLYQIVGIALVHKNKRKITKRYQEKGYVDKKDFDEFIAKHQKMTGNRNKNHYDLLVPETILLPKRRRELRTLICFNSKNQNGMQKNPVFFN--NGKGGGRVLDKNKNL 451
            SIQR EMSL I++ +    L +L K G+LIIEP RLSVK++GQF +YQ +GI+LVHK+K +  +RY+E+ YVDKK+FDEFI + Q    N  K H+DLLVPE IL  +RRRELR    FNS N N + +N VF N  N K   + L + K L
Sbjct: 1683 SIQRREMSLDIMLIQANLPLTDLMKKGVLIIEPIRLSVKHNGQFIMYQTIGISLVHKSKHQTNQRYREQRYVDKKNFDEFILQPQTQRINTEKTHFDLLVPENILWSRRRRELRIRSFFNSLNWNVVDRNSVFCNETNVKNWSQFLGERKPL 1834          
BLAST of CX077104 vs. ExPASy Swiss-Prot
Match: YCF1_CHLSC (Putative membrane protein ycf1 OS=Chloranthus spicatus GN=ycf1-A PE=3 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 3.166e-35
Identity = 75/151 (49.67%), Postives = 104/151 (68.87%), Query Frame = -2
Query:    5 SIQRGEMSLPILITKKKFALKELTKGGMLIIEPRRLSVKNDGQFFLYQIVGIALVHKNKRKITKRYQEKGYVDKKDFDEFIAKHQKMTGNRNKNHYDLLVPETILLPKRRRELRTLICFNSKNQNGMQKNPVFF--NNGKGGGRVLDKNKN 451
            SIQ+GEM L ++  +K  A  EL K G+ IIEP RLS+K DG F++YQ VGI+LVHK+K +I +RY+EK YVD+  F+   A+H K+  N ++NHYDLL PE I   +RR+E+R LI FNS N N + +NPVF   NN +   +  D++K+
Sbjct: 1675 SIQKGEMFLDVMAIQKDLAFTELRKKGIFIIEPLRLSIKWDGPFYMYQTVGISLVHKSKHQINRRYREKRYVDQNHFNRSTAQHGKILVNGDENHYDLLFPEKIPSTRRRKEMRILISFNSGNGNVVNRNPVFLNGNNVRNCSQFFDEDKH 1825          
The following BLAST results are available for this feature:
BLAST of CX077104 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 61
Match NameE-valueIdentityDescription
YCF1_CAPBU4.719e-3954.67Putative membrane protein ycf1 OS=Capsella bursa-p... [more]
YCF1_POPTR1.051e-3853.69Putative membrane protein ycf1 OS=Populus trichoca... [more]
YCF1_ATRBE2.342e-3854.61Putative membrane protein ycf1 OS=Atropa belladonn... [more]
YCF1_LEPVR7.535e-3754.67Putative membrane protein ycf1 OS=Lepidium virgini... [more]
YCF1_ILLOL7.535e-3754.25Putative membrane protein ycf1 OS=Illicium oligand... [more]
YCF1_LIRTU2.863e-3652.32Putative membrane protein ycf1 OS=Liriodendron tul... [more]
YCF1_DAUCA3.739e-3650.66Putative membrane protein ycf1 OS=Daucus carota GN... [more]
YCF1_SOLTU3.166e-3552.63Putative membrane protein ycf1 OS=Solanum tuberosu... [more]
YCF1_SOLBU3.166e-3552.63Putative membrane protein ycf1 OS=Solanum bulbocas... [more]
YCF1_CHLSC3.166e-3549.67Putative membrane protein ycf1 OS=Chloranthus spic... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_54D07_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-54D07-G14-1-4.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX077104 ID=CX077104; Name=CX077104; organism=Citrus sinensis; type=EST; length=452bp
CAAGATTTTTGTTTTTATCCAAAACGCGGCCGCCGCCCTTTCCGTTATTA
AAAAATACTGGATTTTTCTGCATACCATTTTGATTCTTCGAATTGAAACA
AATTAGGGTTCTTAATTCTCTACGACGTTTAGGGAGTAAAATAGTTTCAG
GAACAAGCAAATCATAATGATTTTTGTTTCTATTTCCAGTCATTTTTTGA
TGTTTTGCAATGAATTCATCAAAATCTTTTTTATCAACATAGCCCTTTTC
TTGGTATCTTTTAGTAATTTTGCGCTTATTCTTATGAACCAATGCAATAC
CTACGATTTGATATAGAAAAAATTGTCCATCATTTTTTACAGACAAACGA
CGGGGTTCGATAATAAGCATTCCCCCTTTCGTCAATTCTTTAAGAGCGAA
CTTCTTCTTAGTGATCAAAATAGGCAGACTCATTTCTCCCCTTTGAATAG
AG
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